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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0054700 |
| Transcript ID | LotjaGi5g1v0054700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chitinase; TAIR: AT4G19810.1 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein; Swiss-Prot: sp|Q9W5U2|CHIT3_DROME Probable chitinase 3; TrEMBL-Plants: tr|A0A1B1J8Z2|A0A1B1J8Z2_LOTJA Class V chitinase protein; Found in the gene: LotjaGi5g1v0054700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9303828..9306228) extracted from Lotus japonicus Gifu genome v1.2.
ACATCTTCAAATTTTGATTGGTAGTGAGAGATGCAAGGTTTCACATATATATACACATGATCATCAAGCTCTTGGTTGCA TTAATTCACTACCTCCATGAAACCATGGCCGTCCAAAGCATCATAACAACACCCCTTTTGGTTATTCTTATGAGCCTTCA CTCTTATGCATTCACTGAACCTTCTTTACATAGGCAGCAACCACCGTCCAAGGGTGGTGTTAGAGCAACATATTGGCGTG CAGGGTCTGATTTCTCAACTACTTCCATTGACACAAACTACTTCACTCACATATACTACGCCTTTGTCCAACCTGCACCA GAATCCTTCAACCTCGAAATCACTGAATCCTACAAGAAGTGGGCCCCTAAGTATGATGGGATCCATAACATCCGCCCCCG GGTGACGACGCTACTGTCCATCGGAGAGGGTGGCAACAACGCAACCCTCTTCTCAGAGATGGCCAGCAGCAAACGAAACC GCGCGAGCTTCATAAACTCCACCATCCATGTGGCGCGAAAGTACGAGTTCAACGGTCTTGACTTGGATTGGGAGTGGCCG GGAGATGAAAAAGACATGTCTAACCTTGCGTTGTTGTTAAAGGAATGGTACAAGGCTTAGGTGGTGGAAGCTAACACTAG TAGAAAATCACGTTTGCTTTTAACTTCTGCTGTGTATTTTAACTCCACGATTTCGCTTATTGGTAATGGGCCTAGGTCGT ACCCGGTTCGAGCCATTCGGAAGTACTTGGATTGGGCTAGCCCAATGTGTTTTGATTATCATGGCGCGTGGGCCAACGAA ACGGGCTTTAACGCCGCGTTGTATGATCCAAATTCTAACATAAGCACCAAGTATGGTATCGGGTCTTGGATCGGGTCGGG TGTGCCGGCCGAGAAACTGGTTATGGGTTTGCCGCTATACGGGCGGGCGTGGGAGCTGAAGGATCCGAATGATCATGGAG TTGGGGCAAAAGCGGTTGGTCCAGCAGTTGATACAGATGGTAGTATGGACTATGGTGAAATCTTGGTGTTTAATAAAGAC ACTGGTGCCAAGGTTGTGTATGATGAAGTGGCTGTGTCATTCTACTCTTATTCGGGCACTACTTGGATCGGGAATGATGA TGGACCCTCCATAACGAAGAAGGTTCAGTTTGCTCGGTCAATGGGCTTGAAGGGGTATTTCTTTTGGGCTATTGGCAAGG ACAAGGATTGGACCATCTCAAAACAAGGTAAGAAACCAATACGACAATACCACTTGTTTTCACCTCTTTATAATGATTGA CAAAAAAAAAACCTCTTTATAATTATTGACCAAATAAAACCTCTTTATAAAATTTTTTAATAATACATTTTTGCAATTTT TTGTTGATAATATACATTTTTAACAATATTCATTATTATATCTGTCACGAGTCTGAATCATCACTTTATAGAGTAAAGTA AGCCATTACAATCACTGATTGAGTTGTTTTATTAGCTTTTCAAATTAAGTAATCAACGTTAATAATTATGATGATTATTT TATTCTTTAAAATGACTCTCTTATTTTAGAAGAGCTAGGTCCAGATGGTAGAATAGTTGCAAAATAAACCCCTTTGGTAA AGGCATTCATGATCGTTATTTTGTTTTTTTTATTTAATTTTTTTCTAGATAATGATTTCTAAAATTAATCTATAACATTC ACCCAAAATATTCCATTGTCAACAATTCATGTACTCTCTCTTCTTTCTACTTATTTTTAATTTCAATTTCTCATTTTACA TATTTGTAGTATTAAAAAATGTTCTCTTTTAGGAGAGGAGATGGTTTTTTATTATAAATTTGATGGGTTTGTTGCATTTT AATGCAGGCAGAAGTCTTTAGATTTTATCCATATAATAATGTTTGATATTTTGTTTGTTTGCTTGCGTTTTTTCTCATTT GGCAGCTTCAAATGCATGGGGACACTGAGGGCAATATATGTTATTCCAAGCTTCATATAATGCTAGCTCAACCTTCATAA TTGATAACTGATTAGATCATATATAAATTTATTTTGTCGCTACATTGTTGAATAATATCAGTGTTACGTACATTAGTGAA TACTATGATTTTCGATGAAAATATTGAATACTCTGATTATGTACCAACAATGATTAGAAAACAATTTTGAGTTAAAATTA AAGCTGGGTACGAATAGTTAAGCATGCATAAGAATAAACCATCATCCAATGCAAACAGGTTGAAGTCTAATGTGTTAAGA ATTCACCGATCTTTTGGTGAAAACTTGTTTCTTTTAAGGGATATCAGATATGAATAAAAGATATGTGATAGATATAGAAG ATATAAAACCAAAAACAACCTATAATCTAATAAATAAAATAAAATCTAATAAATAAAATATAATCTAATAGTAACTGCTG G
CDS sequence (LotjaGi5g1v0054700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTTTTGATTATCATGGCGCGTGGGCCAACGAAACGGGCTTTAACGCCGCGTTGTATGATCCAAATTCTAACATAAG CACCAAGTATGGTATCGGGTCTTGGATCGGGTCGGGTGTGCCGGCCGAGAAACTGGTTATGGGTTTGCCGCTATACGGGC GGGCGTGGGAGCTGAAGGATCCGAATGATCATGGAGTTGGGGCAAAAGCGGTTGGTCCAGCAGTTGATACAGATGGTAGT ATGGACTATGGTGAAATCTTGGTGTTTAATAAAGACACTGGTGCCAAGGTTGTGTATGATGAAGTGGCTGTGTCATTCTA CTCTTATTCGGGCACTACTTGGATCGGGAATGATGATGGACCCTCCATAACGAAGAAGGTTCAGTTTGCTCGGTCAATGG GCTTGAAGGGGTATTTCTTTTGGGCTATTGGCAAGGACAAGGATTGGACCATCTCAAAACAAGCTTCAAATGCATGGGGA CACTGA
Protein sequence (LotjaGi5g1v0054700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCFDYHGAWANETGFNAALYDPNSNISTKYGIGSWIGSGVPAEKLVMGLPLYGRAWELKDPNDHGVGAKAVGPAVDTDGS MDYGEILVFNKDTGAKVVYDEVAVSFYSYSGTTWIGNDDGPSITKKVQFARSMGLKGYFFWAIGKDKDWTISKQASNAWG H
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 160 | 160 | 6.9E-79 | – | |
| PANTHER | 1 | 160 | 160 | 6.9E-79 | – | |
| Gene3D | 1 | 147 | 147 | 1.2E-47 | – | |
| Pfam | 1 | 146 | 146 | 1.1E-32 | ||
| SUPERFAMILY | 1 | 159 | 159 | 1.1E-23 | ||
| Gene3D | 51 | 117 | 67 | 1.2E-47 | ||
| SUPERFAMILY | 52 | 116 | 65 | 1.1E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0054700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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