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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0056400 |
| Transcript ID | LotjaGi5g1v0056400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lipid transfer protein; TAIR: AT5G13900.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q9FFY3|VAS_ARATH Lipid transfer-like protein VAS; TrEMBL-Plants: tr|I1MNQ4|I1MNQ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0056400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9624669..9626080) extracted from Lotus japonicus Gifu genome v1.2.
AATGTCACTAAGGAACATAAAGACTATAGCAATTAGTATAAGTAAGGAAGATGGGAATTACTAAGTTGAGGTTCTCACTT TGGTGCATTGCATTCCTTGTGCTGGTGACATGGGTCTCTAGAGCAAGTGCTCAAGATAGCTCTTGCATAAACAAGCTTGC ACCTTGCCTAAACTACCTAAATGGGACCAAAGACCCACCTGATAGCTGTTGTGATCCACTGAAATCTGTGATTGAATCAG ACCAAAAATGCTTATGTAGCTTGGTGAGTAACAGAGGCACAAGGAAAGCTGAGCAAGCTGGAATTAATGTTAATGAGGCT CAGGCATTGCCCGGGAGATGTGGCCAGCGTGTTAATCCATTGTCCTGCCTAACAAGTATGTTTTCCTTAAGTTCATTTGT ACGAGTTTAATTAATTATTGTGCACTGATAATATAAAACATTTTATACGATCATTTTATTAGAATACATTAATATGTCAT GCCATAATTATTTTTAATTTTTAAATATTTAAAATGGAAAATGAAGAAATGAGATTGGATTATTAGATGCATGCGTACAA CTCTTTACACTATCCATGCATTTAAATAAGTCCAATTCATTACATTTAAATAAAATCCAATTTGTATATGAATTTAATTT GGGATTTCTTTAATTTAATGACATTTTTAAGACGTTAAAAGACAAAAATTTATGACGTGCAACTTCAAGCTAAGTATAAG TAAAACAAAAGTAGCAATACATAATCATTAGAATAAAAAAATACCTTCACTAATACTTTGTAATTTTGGTAGACTGATTT CTTTCAATCTTTCATTTTATGTCTTATTTTATCTATAATGGGAAGATAAAAAGATATGTTTATGCATTTTTGTAACAAAA TATATGTTTGTGTTATTTCAGATTCACGTGGTTCTACGAATTCAAGTCAAAACTCAGCAACCAAGTTGATGCAAGTTTCT TTTGGAGTCATGATGATTTCAGCTGTATTAGTTATTGCTATGTAACGAGCATTCAGCATCAATTATTTAGGCACAAATGC TTAGACTTAATATGATAATTTGTTATTGGAAATTTCTTTGAATTATTTTCTTCTTGTTATAGTGTGTGAACACACTAAAG CTTGTTGTATTAGTAAATAAATTGACATTTTTTTTTTAGAAAAATAATTGTCTTTAAAATTTAATTTAGTTGCAAATAGA TGTTCTAAATTTGTCGAATATATATATAATAATTATAAAATATTATTATATATTGAATGGTCATAAAAAAATTATTGTAA CATTGGTCTTTCTCAATAAAGAGTATTTAGCGTCTAAAATTTGCAGCGATCATATGACTAAAATACTAAATTTGTAACAC TAGAGTCGGCAGCCGACGATACAAAAGTGAAGTATTTACCATATCCCTTAAC
CDS sequence (LotjaGi5g1v0056400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAATTACTAAGTTGAGGTTCTCACTTTGGTGCATTGCATTCCTTGTGCTGGTGACATGGGTCTCTAGAGCAAGTGC TCAAGATAGCTCTTGCATAAACAAGCTTGCACCTTGCCTAAACTACCTAAATGGGACCAAAGACCCACCTGATAGCTGTT GTGATCCACTGAAATCTGTGATTGAATCAGACCAAAAATGCTTATGTAGCTTGGTGAGTAACAGAGGCACAAGGAAAGCT GAGCAAGCTGGAATTAATGTTAATGAGGCTCAGGCATTGCCCGGGAGATGTGGCCAGCGTGTTAATCCATTGTCCTGCCT AACAAATTCACGTGGTTCTACGAATTCAAGTCAAAACTCAGCAACCAAGTTGATGCAAGTTTCTTTTGGAGTCATGATGA TTTCAGCTGTATTAGTTATTGCTATGTAA
Protein sequence (LotjaGi5g1v0056400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGITKLRFSLWCIAFLVLVTWVSRASAQDSSCINKLAPCLNYLNGTKDPPDSCCDPLKSVIESDQKCLCSLVSNRGTRKA EQAGINVNEAQALPGRCGQRVNPLSCLTNSRGSTNSSQNSATKLMQVSFGVMMISAVLVIAM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| PANTHER | 10 | 139 | 130 | 4.5E-50 | – | |
| PANTHER | 10 | 139 | 130 | 4.5E-50 | ||
| Pfam | 16 | 106 | 91 | 2.6E-16 | ||
| Phobius | 20 | 27 | 8 | - | – | |
| PRINTS | 28 | 44 | 17 | 5.4E-7 | ||
| Phobius | 28 | 123 | 96 | - | – | |
| Gene3D | 29 | 106 | 78 | 9.5E-14 | – | |
| SUPERFAMILY | 30 | 108 | 79 | 6.1E-16 | ||
| CDD | 36 | 98 | 63 | 1.10298E-15 | – | |
| PRINTS | 48 | 62 | 15 | 5.4E-7 | ||
| PRINTS | 84 | 101 | 18 | 5.4E-7 | ||
| Phobius | 124 | 141 | 18 | - | – | |
| Phobius | 142 | 142 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid transport | The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi5g1v0056400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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