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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0060600 |
| Transcript ID | LotjaGi5g1v0060600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT5G11170.2 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr|A0A151RLG2|A0A151RLG2_CAJCA DEAD-box ATP-dependent RNA helicase 56; Found in the gene: LotjaGi5g1v0060600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10165702..10175126) extracted from Lotus japonicus Gifu genome v1.2.
GTAACTCAATCAGAAAGGTTTGTTTACTTACCATCGGTTCCTTCGACCTCCGTTTTCCTTGGTTCATCACCAGTGCAACA TGAGTGCATTCCTCAAGCAATCCTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTG TTCTCTCAACTTTGCAGCAGATTGATCCTGTTGCAGGGCAAGTTTCTGCTCTTGTTTTGTGTCATACTAGGGAACTAGCA TACCAGGTATTTATTCGGGACTCAATATTTGATCTGCTGCAGGGCAAGTTTCTGCTCTTGTTTTGTGTCATACTAGGGAA CTAGCATACCAGGTATTTATTCGGGACTCAATATTTAAAAGCTTCTGGAAATCTTTATTGTAGCAGCATCTGATTTAAGA TATTTTTGCTATCTCTTTCATGTAGATATGCCATGAGTTTGAGAGGTTCAGCAAACACTTGCCTGATCTCAAGGTTGCTG TTTGTTATGGTGGAGTCAATATTAAAGTTCACAAGGATCTGTTGAAAAATGAATGCCCTCATATTGTTGTTGGTACTCCT GGAAGAATCCTAGCGTTGGCCAGGGATAAGGAACTTTCGCTGAAGAATGTTCGGCATTTCATTTTAGATGAACTAGTGTT TTTTACCCGCGCGTTGCACGGGGAATACATCTATTATATTTGATAGGTCAATTAATACCTTGATCATTAAAAATATAATA AACAACTGATGAAATAGAAGAGTATGAAATGATGAGCAAAGTGGACAAAAAGTCTTAAATTAAAACCCTTGTTGCATAGA TTGAACTTCGTACAATTGAATAACTAATAAAAAAATTGGTTAACCAAATCTCAAATTATGCAAAACATATTAGGGGATGT GGTTTAATGATGGCTAATAAACAATAGCTGATTTAATCTACAATGAAAAAAAGAGAAAAGATTCTTTATGTACGTGATTA TGCGAGTTCATTTTTTACACAATAAAATAAACTAAGTTTGACTCATATCAACATGAAGTCGTTTCACATTCTTCATTAGC CTAAAGACAATATCACAAATTATAGATATGAAGAATCACCAATAAAGCATTCAGAACACATTTTAATCTTAGAAAAAAAG AATGTACCGCGAAATTTGTTATTGTATTTGATACATTAATTAATACTTAATGAAGGTACTTTCTTGTTAAAATATATTTC TTCCCGTAGGAGAATTTAACTCCTATAATAATTTGTACAAAAAAATTAAAGTGGATGATATTATTATGTAGTAAAAAATT AACATCAAACTATATTATATTATGTTTTTCTTGTAACAAAAAAAAATTCCGATGAAATCTTATTAACATTTATTTTTATG TAGAAGTATTTTCATGTAAAATATTCTTCTTATATATAAAAGCTTTTAGGCTCTTTCTAATACATTTAGATCCAGCTTCT CCTTACTCTCAGGATGCCTGAAAGTCTTTTCTCAAGTCTATCTGGTGGGTAATATCGATGAAGATGATGACACCCACCAT ACCTTGCTTGCTTCAAGGTCGATCTCTTGTATCCTCCTCCTGCCGAAGACTTTAAGAGTAAACCTTGCCATTCCAACTTT CATCGATCGAGTTTCAGTTGTTTTTTCTGTTGATCCAGGTGAGAAAGCTTACTAAGGCAACCTCTGCTTTTGTCTATCTC CCAATATAAGAAGCATGTTGCTTTGCTCTTATAGTAGTACTAATGAGCGTACTTTAGAACAAATTTCTAGCGAAGGTCTT GACAGTTTGGAACTGAAAGGTTTGGTTCATTAATAATATCTAGTAGTTTCATCATGCTATTCTGCTTTTGAGCTTGTTGT ACTTACCGGAGCATTTCTGCGATAAAAAAATTCAGAATAGTAAATCAGTCGTAGTATGCTCCATTTACTTGCTCTAGTGC TCAAGTGATAGCTGAGTGCATACTGTTTGCATCTGAATTATATATAAAAGACTCTTAAAAACAACTACTTAATTCTCCAT TACAAAGAATATACATTACATCAGAACCTAATTATTATTTGTCAGTGGCATAAGTGTCGAAAATAATAGTAATGGAAATT TCGAATGGTGTGGATAAGGGTTAAAAGTCCAATCTCATAAGAAAGAAAAATCTCCATTTACATCAAAATCTCTCTCAGAT TTCTCTACCTCACTATCACCACCGTTTTTCTTATAATTATCCACAAACACACTCACAAATTCCACACAGTACCTAACATC ATATGCAAATTTTGTTTTCACTGCAACCAGAGTCTGTTCTCTGGCATAAAAAAGCACTTCATAAAGTAAGAAGGTATCAC ATTTTGAATTTAAATCATTAAAATATTTATTTCTAATTAAAAAATCAAATGAAACTTGCTTCCAAATCAACAGCAATCCT AGGTGCTATTCCTGATTGTTGTCCAACTTTAACATGAATTAATATGAACTCATGCTAATTCAAATGAAACTTGCTTCCAA ATCAGCAGCTTCCAGCCGTATCTGCATTCTAAGTAACAGAAAATCAAGAACTCATGAAGTGAGATTGATAGACATGTTAG AGTAGGATAGACTAAAGACCACCAAACATAATAGCAATATGTGCAACATCAATCTAGCTATGATAGTGCAAAGATAGCAA TCAAATTTGCAGACAGATATGAAAGCCAAAGAATGAATTGAAGCCACTTTTTGGCTATGGCCTTCCAGTGGTTTCCATAA CCAATCAGATCTATTTGTAAGGGAAAACTAATCACATGCTACTAAAGAAGATGAATGGAAGAAAACCCCTCTAGAAATTT TAGACCCATTATATTTGTTGAACGGCTAAAACAACTCTTTGCTTTATGTAGCACTGTTGTTGAAAGTACAATAACCAAAT CAAAAACATATGCTGATACTAAATCGTAATGTGATAATTACACACTCATGCAAGCAAGACTTCCAATCACACTAAAGTTT GATTAATTGAATCATAGTAGAACAATGATTAGTTATAAAATCTAATATTGCCTTCGAAAAGCGACTTTTAATATATGTAA TGATGATAGATAGATGTAGAATTGATGAACTAAGTCAGTAAAACTATATATGCATCACAGTAGTGCAACACCAAACACAC ATCTCTATCTCTTATCTGGTGAATATATACATATGCATCACAGTAGTGCAACACCAAACACACATCTCTATCTCTTATCT GGTGAATATATACATATAATGGACTGAGAAAAACCTCCATGAGTACTGGTCTCACATGTTTCGTGACTTACTTGAAATGA GAGCAAGATAAGATCTTGAGTCATCAATCATGTTTCATCTTCAGCTAGCTGAGAATCAGAGAGTGTAGTCAGAAAGAGGT ATGCACCTCATTGTCGTTCTGTACCTACGGATAAATTCATGTCAAATGTTTCCAGGGAAGCAAAGGAAATCAATTTATTG TTAGAACATTGGTTTAGGCGTTTAGCATATTAGAAAGGATAGCACGAGTTTTAAAAGTCTAACCTCAATAGTATAGCTTG AGCGAACAAAGATAAGCAGTAAAATCTCATCCATGATATGTAGTTTTGTAGTTGTAACGGCAAGCACCAACAATAATAAT TAATTTCCTCGGTGCAAGAAGCAGGCAAAAAGAAAAAATTACCAAATAAAAAAGTTGCAAGGAAAAAAATCTACAACTTC TCCTTTCTCTCCCCTCAATTCTTTCACTCCCTCAATCCACTTCACTAACAATGATTAGGTTAATCAAAACATACACAGAT CAATGTTTCACCTCCTATAACATAGGACACAAATTTTAGATGCAAATTAAGAAAAACGAATAAAATAGAATCACATACAA AGGAGAATCAGAAAACATAAAAAACAAATCAAAATATTGCAAAATTCCATATAGAATATAAAATGGACTCACCATCCATG ACTTCCAAATAATCTCTTTTGGTGGAATATCTATAAAAAAAAACCTGAAGAAAAGAATTTGAAATTAGTATGGCAAGTGA TGAACGAAATTGAGCATGGCAAGTGATGAACGAAATTGAGCATGGCAAGTGATGAACGAAATTGACCTTGAAGTCAAACA TGAGTGAATGAAAGTTAAAGGTAAAGTAAAATAAAATTGAAATAAACCATAACATATTATGCAAGCAAAGGAAGAAAATA ATTTGAAACCTCCATCTGCAACCTTCCCAATCAGTCCAAGGCAGCAAATCGGAGGGATGCGATTGCAAGTCGATGGCAAA GTGGTTCCGTTGAGATATGAGACGATTTTGTGGGGGTGGTTCCGTTCAGTGGAGAGATGAGATGAAAATTGCATGGAGGA GATGAATTCCATGGAGGAGATAGTAGAGGTAGGCAGGGTTTTAAGAGGGTTTTTGCTGATGGGATGTATTATTGATTTAA ATTACTTATCACAGATTTTATATTAAGATAAAATCATGAAATAAACAACATAAATCCTAATCAAATCTAAAATTAAAAAA TGTACTAAATAAATATAGATAAAAACTATCAAAATCTAGCAAATCACAATAAAAACTCATAAAATCCGGAATTAATTAAA AATCCGAAAATTCAATAAAAATAACATAAAAATTAATTAATACTCTAAAAATAAATTAAGATAAAATCAAGAAATAAAAA ACCTAAATCCTAATAAAATCTAAAATTTTAAAATGTATTTTTTTATTAAGGAGAAATAAGGTAAGGAAAAATCAGGGCAC ATGTGGCAAGTGGGGCCAAGGAGAAAGAGCTTACATGTAAAATATTAGGTGAGAATTAATCTGGGAGCGACACGTCACTA ACTTGCCCTGTGAGAGCGACACGTCATGCTAGAAGTTGTTCTTTTCTAATATATATTGATATTGATATTGATATTGATAT TGATATTGATGTGATAAGATGCTAGAATCACTGGGTATGTTTAATGGCTTAACGGTTGTTCTTAGAAATTCGGATCATAC TTCTGGACTTGCTCTCACTTAGACATGGTTTTCGTTTTTCCCATTATGATTTCTGCAGACATGAGGAAAGATGTGCAAGA TATTTTCAAGCTGGCTCCCCATGACAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAATGAAATCCGTCCCGTCTGCA AAAAATTTATGCAGGATGTAATGTCCCATGCTCACTAATACTTATTAGAAGTCTCTTTTTCATAATGCACAGATTCCCTG AAATCATGTTTGATATTTAGAATGCCGTGGTTCCGTCAAAATTTGCTTTTGATGGTAGGGGTTCAGTTTGGTTAGTGCCT TTGTTTCTCAGCCAGTTTTTACAGAAATGTGGGGAGGAGTGTGGTTTATGCATGGGGTTGGTGCTAGAAGATGATGAGAA TGTTTTAGGAAAGCTCCCGAGTCTTGGCTTCTCTTCTACACTTCCCCCAATTTGTTTCACATTGGAAGCTAGTTTTGTCC CTAATAGTCTGTCTTCCTGATACGAATTTTCATAATGGGAGGGGGGTTGTTAGAGTATACTGGTTTTGTTGCTGCCAGTG TTTAGTGTGTCTATTTTCAATGTTCACTTGGGCATGACTGAAAAAAGTATCTGCAAGGAGACACAATAAATCGACCGGAA TTGTGATTCAAGGGATCTCATCCATCATTGATTTTGTTCTGGATTCCATTCAGCTCGAGGAGGGCTCCTAATCTGATTTA CTGTGACATTGTTCGTTTCAGCCAATGGAAATTTATGTTGATGATGAAGCGAAATTGACCCTTCATGGACTTGTCCAGGT CAGCTACAAAATACTTTCATATTCATTCATGTTTTATTGAATAATGTGTGAGCTGTATGGCTGATATTGATTATTGAAAT GACAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACAGGAAGTTGAATGATCTTCTTGATGCACTGGACTTCAATCAG ATTGTTATCTTTGTGAAAAGTGTCAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTCCCGTCTATATG CATTCATTCTGGAATGTCCCAGGAAGAAAGGTTCGTATTATGTGATATCAGTAGATTTTTTTTATTAAGCTTAAATGTTT TCCTTGTTTTGTTGTGTTTTTTGTTCTGGTCTAATTATATTAAAAAATGAAATTGTCATCTACTTTGAGTTTTACTAAAC ACATCCAAGAGATGCTGCCAGTGTGCATAGTCGTGCTATGTTGCTCGTGCCACAGAGCATTTTGCATAAAACTTTATACT ATATTATACATTAAAGTAAAATAATTATAGATTTTTTTGTAACACGTGCAAATTTAAAATAAATTCACACTGCAACAGTC GCAACACACCATAATGTCTGCAACCGCAGCCACAACCGCAATTTTAAAGCCTGAACACTTGAGAAACAATGAATGGCTCA CCTGCTTACCCCAATTGGCAGACCTGACTTTGTATGTTCCCATATGTAATTGATGTGGAAGGAGGGAAGTGGGTCTCAAT TATTGCATGTCCATATTACATCTGTCCATAGGTTCTTGAACTGAATTTGAACAATGGAGATGGGTCATCATCAACAATAA AATTCCAATCCTTAAGGTTTACCAACCAATTTGCACGGCTGAAACCACCAAACAATGACAAGCATAGGTTAGTGACATTG GTGTCAAATATGAAGGTTGGGAGTTTCTGGTCCCACAGCCTGAGACCAGCTGATTATTTCGGGAGAGGTGAGCGCTTAAG GGAGGTGATTGGGTGCAGCCCTAGATCGGATAGCAAATATTTTTTCTGGTAACCCAACTCTGTGCATCAACATAAAGGGG TGCCTGATGCAACCCCTTGAGCTGATTTGAAATTTCACAGAATATTGTCTTTCTTATTTAGTAGTTGGACGTTACAAACA ACCCCCTTAGTTAGAAGAACAATAGTTAGTTAGTAGGATAGGGAGTTAGAGACCTTGAGTGGGAGGTGAGATGTATAAAT AATAGATAGGACTTCATCTTGGGATCATATTTATAATTGGGAATTTGTGGAGAGTCCTGACACCTGTCTTGTGAATACTC AGCAAATGAGATTTATGAGTTTTGTCCGTGCTGTACATACCTATAGTGGGTTAGAAGAACAGTAGTTAGTTAGTTGGATA GATGGGTTTTAGGAGTTACGCTCTGTTTGGTTTAGAAGAGAGATAGAGAAGAGAGCAAGAGATAAGAGAGAAGACGAGTA GAGAGAGAAAAAGGTGAGAAATTGAGTAGATTTTATGATTGTTTGGTATGAGAGAAATAGAAAAGATAGAAGAGAAAGAT AGTGGGTCATAGTAAAAATACACTTTTACCCAAATAAAAAAATGAAACAATTGTAAAAGTAGGACAATATTGGAAAAAAG ACTCCAGTCCGTACCATTTTTTCTTCTTTTGATAAGATCTCAAAAAGTGGGTGGGTCCTACGCCCACTCTTCTCATTCCC TCTTTCTCACCTTCACCAAACGCAGGTGACTCCTCTCCTCCCCTCTAACTCTCTCTTTTCCATCTCTATCTACCCAAATC ACCCTCTACCAAACCAACAGTTAGAGTGAGAGACAAGATGTATAAATAATGTAGAACTTCATCTTGGTGTCAGATTTATA GTTGGGAATTTGCGGAGAGTCCTGACTCAGTCTCATGAATACTCAGAAAAAAGATTCACGTTGTACTTTCTGAGTTTGCC GATGCTTTACCTACCCCACACTGGGTCAGTGTTGAGGAACTTTACTCTGCCATGAAGTATAAACACATCCTTTCATTCTT CAGTATTTGTTTCTATGAACATGCATGATTCTAACAATTATGCATCTGTTCGAGTTTGTCACTAATTGTTTTGATTGTTA TTGAAGTAGGTCAATAAATTTGGATTTCTATTTGTTTGAAATAAAAGTGTGCTTTGGTAAATTGTGTCTGATCTTAACCA AATGGCTTTTGTAGGTTGAAGCGTTATAAGGGTTTTAAGGAGGGGCAGACAAGGATTCTTGTAGCAACAGATTTGGTTGG TAGGGGAATTGACATTGAACGTGTGAATATAGTCATAAATTATGACATGCCTGATTCTGCAGACACATATTTGCACAGGG TATGATTTATTTAATCTTTTTTTTTTGTTCCATTGTTAGTACTAGTAGTAGTTCCTATATTCTAGCCTCGATCCACCTAA TTGTAATATTTTTTGGATAAAATTCTTTACAGGTTGGCCGAGCTGGAAGGTTTGGCACCAAAGGTCTTGCAATTACATTT GTTTCATGTGCTACAGATGTTGATGTTCTCAACAATGTAAGAACCTTGAGCTTTTCTTGGCCAGTATATATTTTATGTTG GGCAGTGTTGTGAAAAAGCAGCCATTATGTGGTGGAAATCATCCATAAGGCCATAAGAGATCCATGGCAATGTGGGTTTT TTTTTATGGTGTTTCCAAGGTGGTTTAGTTACCCTTCTTTAGGAGTATTTTGGAGTCTGTCTTGAACTTGTTTTGAAACA GAATCGTGCTTTGACCTGTTAAATTTCTGAAGTCCTCCCTCCTGTATTTGCATCTGCGCTGCATCAGTCTTGTACGGAAA TTTCTTAGGTATCAATTATCAGCTTCATGTCTCACCCTCTTTTCATGTGAACAGGACAATCCTCACATGATTAATCACTC ACTAAGTTTTCTCATGTCTCACCTTTATGTTTTTATGTGAGCAAAACAAAGTCTTCTCAAGATCCTACTCACCTGATTCC TAGAACTGAAAGTCCCAAATAGCTGACTCTTTCCAAACATCCCTGAGAGCACCATGGGTACCCACTGCAGAGGGCCCTCA CTGCTTCACTCATTATTAGCTCACATTTCTTAAGATCTCTCTGCAGCTTAATCCAGCAATCCACCCAGGCTTCAAGTCCA TAATGTCATTTCCAGGCTATCTGTAACCGGTGCCCAGTTTTTTATCTTATTTTCAGCTTGCTTCACCTGATTCAAGTGAT TGAAAACCTATTATATCACACTACTATCCCATGCTGAGCAGATTACCCACACTACGTTACCAATTAAACCACATCATTCT TTCAGATCTCTTTGCAGTCTTGCCATTAACTCAACAACCTACTCAAACATCAAGTCCTCAACACCTGAGCATGTCCAGCC TCGGTAACATTTTCCCTGCCCCCCCCCCCCCTCCATTTCTGCTTGCTTTCTCGATCTGAAGTGATGGCGACTAAAGTACC TTCCCAACCTTCATCAGTAGCTTGAAATAAGTTAAAATTTTATTCATTTATATTATGAAGTTCTTTGAGAATTTTGGGTC AGTTTGCATTACTTATTGGTTTGCCGTGAATTGCAGGTTCAATCCAGGTTTGAGGTGGATATAAAACAGCTTCCTGAGCA GATTGATACATCTACCTACAGTATGTTCTTCGTCATCCATTAATTTTTTTCACTACCTATTGTGA
CDS sequence (LotjaGi5g1v0060600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAAGATGTGCAAGATATTTTCAAGCTGGCTCCCCATGACAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAA TGAAATCCGTCCCGTCTGCAAAAAATTTATGCAGGATCCAATGGAAATTTATGTTGATGATGAAGCGAAATTGACCCTTC ATGGACTTGTCCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACAGGAAGTTGAATGATCTTCTTGATGCACTGGAC TTCAATCAGATTGTTATCTTTGTGAAAAGTGTCAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTCCC GTCTATATGCATTCATTCTGGAATGTCCCAGGAAGAAAGGTTGAAGCGTTATAAGGGTTTTAAGGAGGGGCAGACAAGGA TTCTTGTAGCAACAGATTTGGTTGGTAGGGGAATTGACATTGAACGTGTGAATATAGTCATAAATTATGACATGCCTGAT TCTGCAGACACATATTTGCACAGGGTTGGCCGAGCTGGAAGGTTTGGCACCAAAGGTCTTGCAATTACATTTGTTTCATG TGCTACAGATGTTGATGTTCTCAACAATGTTCAATCCAGGTTTGAGGTGGATATAAAACAGCTTCCTGAGCAGATTGATA CATCTACCTACAGTATGTTCTTCGTCATCCATTAA
Protein sequence (LotjaGi5g1v0060600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKDVQDIFKLAPHDKQVMMFSATLSNEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALD FNQIVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGQTRILVATDLVGRGIDIERVNIVINYDMPD SADTYLHRVGRAGRFGTKGLAITFVSCATDVDVLNNVQSRFEVDIKQLPEQIDTSTYSMFFVIH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 45 | 45 | 5.42395E-29 | – | |
| ProSiteProfiles | 1 | 43 | 43 | 9.409 | ||
| PANTHER | 1 | 205 | 205 | 2.4E-130 | – | |
| Gene3D | 1 | 53 | 53 | 1.6E-7 | – | |
| PANTHER | 1 | 205 | 205 | 2.4E-130 | – | |
| SUPERFAMILY | 3 | 187 | 185 | 3.9E-45 | ||
| ProSiteProfiles | 55 | 216 | 162 | 21.942 | ||
| CDD | 56 | 185 | 130 | 1.04727E-59 | – | |
| Gene3D | 57 | 220 | 164 | 2.2E-53 | – | |
| Pfam | 69 | 176 | 108 | 1.1E-28 | ||
| SMART | 95 | 176 | 82 | 5.5E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0060600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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