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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0061800 |
| Transcript ID | LotjaGi5g1v0061800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | V-type proton ATPase proteolipid subunit; TAIR: AT2G25610.2 ATPase, F0/V0 complex, subunit C protein; Swiss-Prot: sp|Q9SLA2|VATO2_ARATH V-type proton ATPase subunit c''2; TrEMBL-Plants: tr|I3S4U9|I3S4U9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0061800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10319680..10324190) extracted from Lotus japonicus Gifu genome v1.2.
ATGATCCAAAAGTAACAAAACGGCACGTCGTTTCATTGTTTCATCTCTCCCCCACTCTCTCTCTCTCTCTCTCTCTAACA AAACAACACTGAGAAAGAGAGATCCGATCCCGATCGTTTGGTTCTCAACACGAACACCTCATCATCATCATGTCTGGTGC TGCAACAATGGCGACGCGCTCGTACGTATGGAGCACCGCACTCGTCAAGATCTCCCCATACACCTTCTCCGCCATCGGAA TCGCCGTCGCTATCGGCGTCTCCGTCCTCGGCGCTGCCTGGTACGCATCCTATTCCCGCTCTCTCCGTTTCCGATTTCGT GATTTCCGTTATTCTCACCCTTGACTTTGCCTGTGTAGGGGAATTTACATCACTGGTAGTAGCTTGATCGGTGCTGCAAT CAAAGCTCCACGAATCACTTCCAAAAATCTCATTAGGTAAAATTAATTGCCAATACGCTTTCTATTTTTTTTTTTTTTGA TTATTTGGATTTTTCGCTTTTGATTTCGAATTGGACTCTGTGTATAAATTTGTTCAAGTTGTTTTAGTTTGCTTGAAAAT TGAAATAGTTATTATGATAGTTGATAGGGTTTCCTCAGAACTGTTCCAAGGATTAAAGTCTTTTGGTTTTGTTCGATTGG TGTAGGCTTCTGCGGTGTTCTGGTAGATGTGTTCCATTTTAGATAGGAAGCTTTGTTTAATTTTGCTTCGATTGAGGATT GCGATTTTGAAATTCTTGGTAGTTTTGATGGAAAGGAGAAAGGATGATGGACGGTTTGTAATAGAGCTTAGACATTGATT CGGGGATTCCGGGTGTTAATTTTGACATTTAGGCTTACTCTAGGTGTCGTGTTGCTTTTTCATTCTGTTTTCTTTACGGT TGAGAGGAAGTGTGAAAAGGTTGTGATAAGATCTTCAATATTCAGGAACTAATCTAGAACCCAACAGGCTTCATGCCTAA AAGTATGATATTATCAGAACATATGAATATAAAATTTATTGACAATGAGAAAGAAAGATTACCAGAGGATCATTAGCAAG AAACTAATGTTGAATACATAGTGAAATCAGTTCACAATCAAAGCTAAAATCAAACACATCATATGATTTCTATTAATAAA TTGTCAACCTCCAAAGAAGTGAAAATTAAGCCTCCGACAAAGTACTAGCTTCACTACTGTCATTGTTGATTGAGCACAAA AAGGCTTACCACGGAGTGCCATTGTAGTTGGAATTGTATTTTTGTTATCTTTCATGTCAACCTCCATTCAGTCTTACTGG CTATTGGGTTTACCGGTTTAGGGTGGTACTGTACCTGTGTACCAGTGACAATGATAGGCTATTTCTTATTTCCTAAGCAA AGGCCGAGGCTGTTACTGCTATGATTTCTAACTATGCCTGTCTATTATTTAAAAAAAGGTTTACTATGGTTTTCTTCCCC ATCTGTTGGTTTTCAAGGAAAATATCTCGATTTTAAATGGTCTATTTCTGTAGAAAATGGGTTCCTGAAAAATGTGCAGG TAAGATAGTTTTCTAGAAAAGATTTCCTTCTGTAACTTTTTTACATAGCATGATGCATTTTCCCTTTATTTTGTATGATT TGATCAAACTTTGATAAATAGCAATGACAGCATTTGAACTTCATCCAGTTGTTGACCATGCAAGTTTTGATTGCAATTGT TACTTCTGTTAGCTTTGTTCAAAGAAGATGTCTTGTAGCAATTAAGTTGTATAATCTTCACCTTTGACTGTTAGCCAAGG TTGAAAATGTTTTCTAAAATTTTCTTTTCTTAACCAAACGGAAGATTTTAGTGGAAAACATTTTCCACTCCAAACGCCAC AAAGTACTGAACAAAATATAAGCCTTACAGTCTGATGGTTTTGGGTAGAGGAAGAACTTCAACATTATGTTAAAACAAGT TGAAGCTGAATACTATGTGTGGGATTGAACATTAAAAGTTCATTCACTCCTTTGTATGAGAGGGAAAGGATAATGAGCGT GTGGGTGTTTTATTTATTCATTTGGCTTTACATATAATGATCAATTGATCATACGATAAAGGTTCATTTACTGGAGTTAC TAAAGTCGAATGGTCATTTCAGGCTGTTGAATCCTGCACTTCATGTAAATTTCCAAATTACCATTTCGAATGTTTGAAAT CAGGATAGTTTTACTTTTGAGTGATGTGAAGCAGTATTGTCAATCCCAGATAGCAGCCGATCCCAAAAACACTATAGCAG TATAGCGCATAACAGGATGGCCTCTACACTGAATTTTTATATATTTATACAATTTATACAATATACATAAATAAATGATA AAAAAGTACTTAAAACTTGTGATAGTCATAGTTAAGATTAAAAGATCATCGGTCACAAAAAGAAATCATATAAGCCTGAC CAGTGAGAGATATAAAAGGCATGCATAAAATCAAAATAGAACCATTGAAAAAGAAGAGCAAAAAAATAAGAACCATAAAC AGGACAAAATAATCAACAAAAGAAAGAAAAACAGGGGGAAAAGAACGCTGCTGAATGAGGATAAAAGAGACTGTTGGGGG GCTGCAGATGGTCACCGGAGCGTCGTCGGTCTTTGTGCGGTGGCTGGTAGCTTGATAGGTGCAGAAGGGGTAAGTAGACA AGGTTATCGGGAAGGATGGATTTGCAAAGAACCCAATATTACCCCTCAAAGTTTACCCTAATCTTCAACTTGTGAGGGTA TGTTCGAGTTTTCCCTGTATCATTGTAATGGCGCCGCGAAGGCGCTCGAAGTCCGCAAAAATGATTGCGATTTCAGCTGT GTTGGCCGTAACATTAAACTTATCCGCCACGGAACTCATTGTGGTGACCAGGGGCCACTTGACGCTATTAAGAATCCCGA TGTGAAGATTCTTGTGTGTAGGATCTTTTACTAACATGCTTCGCCTAATTTGAGCATAGGAGATTATTGTAGTAATGCCA TTGTGGTAGAACTCAATGTGTTTTCTTTTGTCTTCCAATGCGTGTTTGTTTTTTTATCAATTTCTTAGGGACTTTTTTTC AGCTTTATAAATAAGATTTTGATTATAAATTGTTTTGATTTTATAATAAGATTTGTTGACTAGGTAAATGGTAAATTAAG GTTGTTAAACCCTGTATTTAATGTGAAATCTAGAACTGTCATTCTGAATATCTAAATCTAAATTTCTTCTATTTGAGTGT TGTGAATGCTAAGGTTCCTTTTATGTAATATCTACTTAAACTATCCTGGTCCAGCTGATATAGTTTCAAATATAACAATT TCTGCCACTTGACAATATGGTTCTTGATGTTTCTGGCATTTCAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGT TATCGTGGCTATTATTCTACAAACAAAATTAGAAAGCGTTCCAAAATCACAAATCTATGATCCGGAGTCTCTTAGAGCTG GATATGCCATCTTTGCCTCTGGAATTATAGTGGGCTTCGCAAATCTTGTTTGTGGGTGTGTATTCTTTTTAACCTACATC TCACTTTTTCATGAGAATATATCTTGGTGAATGCATGGAGACTTTTTCCATCCTTCTGTTGCATATTTGATTAGTATCAT CACTTTCTTCTCGCAGGTTGTGCGTAGGAATAATTGGAAGCAGCTGTGCATTATCTGATGCTCAGAACTCATCTCTCTTT GTGAAGATTCTTGTGATTGAGATCTTTGGTAGTGCGCTTGGTCTATTTGGAGTTATTGTTGGAATTATTATGTCAGCTCA AGCAACATGGCCCTCAAAATTTTAGGTTGGCTAATACTGTGGGATTGAAATTATGGTAGAGTGAAATATGTTTTCGGTAA TGCTGGTGATCAAGTCTTCTCTGTTTATCCCTGTTGGCAAGAATGTAAAATCCAGTGTAATAGCTTTCCTCCATAACAAC TATAGGCTATATTATCTCCCGATGAGTTGTTAGAAGGTGTTGTGTGTTCTCAGATATATCAGTCTATTTGTTGAATTTTA GTATTTTTGGAGGATTAAACATCAGTTTATTCATTTATCAATAAATAATGTGAATTTTATTTCGGCTCATGCATCATGTC AAGCAGATTTGTTGATATCCAGAGATTTGCTATTGAAGTTCATTTCTGAGTAAGAAGTACAGGATCAATGTTCCTATGTT AGATTGTGAATGCTTATTAGTTAATTAATAAGTACTTATCTCTAAACATAAGCAATTTTTAACTTATTTTAATAAGCTTA TTAAGAGTGTGTTTAGGTAACAATTTAATTAAACGTTTATTGCTATAATTCTTATCACATAAGCATTTATTTTAAACCAA TTCGATATGCTTGTTAAAATAAGCTCAAAATAATTTATATGTAAAGATAACCGCTTAGTCATAAACTAATATGAGTAGTT TATGAAAATAAACTATATGAAGGTTATAACTTATAAGTTATTTTTATAAGCTCATTTACCCAAGCACTTGCATAAGCTAA CCCTAGTTGAATAACGTGTTTATGTGATAAA
CDS sequence (LotjaGi5g1v0061800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGTGCTGCAACAATGGCGACGCGCTCGTACGTATGGAGCACCGCACTCGTCAAGATCTCCCCATACACCTTCTC CGCCATCGGAATCGCCGTCGCTATCGGCGTCTCCGTCCTCGGCGCTGCCTGGGGAATTTACATCACTGGTAGTAGCTTGA TCGGTGCTGCAATCAAAGCTCCACGAATCACTTCCAAAAATCTCATTAGTGTAATCTTCTGTGAAGCTGTTGCTATATAT GGTGTTATCGTGGCTATTATTCTACAAACAAAATTAGAAAGCGTTCCAAAATCACAAATCTATGATCCGGAGTCTCTTAG AGCTGGATATGCCATCTTTGCCTCTGGAATTATAGTGGGCTTCGCAAATCTTGTTTGTGGGTTGTGCGTAGGAATAATTG GAAGCAGCTGTGCATTATCTGATGCTCAGAACTCATCTCTCTTTGTGAAGATTCTTGTGATTGAGATCTTTGGTAGTGCG CTTGGTCTATTTGGAGTTATTGTTGGAATTATTATGTCAGCTCAAGCAACATGGCCCTCAAAATTTTAG
Protein sequence (LotjaGi5g1v0061800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGAATMATRSYVWSTALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIY GVIVAIILQTKLESVPKSQIYDPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSA LGLFGVIVGIIMSAQATWPSKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 8 | 181 | 174 | 3.2E-107 | – | |
| PANTHER | 8 | 181 | 174 | 3.2E-107 | – | |
| SUPERFAMILY | 22 | 91 | 70 | 1.7E-17 | ||
| Gene3D | 23 | 178 | 156 | 9.6E-57 | – | |
| Phobius | 24 | 47 | 24 | - | – | |
| CDD | 26 | 88 | 63 | 6.37697E-27 | – | |
| TMHMM | 26 | 48 | 23 | - | – | |
| Pfam | 29 | 88 | 60 | 9.6E-15 | ||
| PRINTS | 42 | 66 | 25 | 1.5E-25 | ||
| Phobius | 48 | 67 | 20 | - | – | |
| PRINTS | 68 | 92 | 25 | 1.5E-25 | ||
| TMHMM | 68 | 90 | 23 | - | – | |
| Phobius | 68 | 88 | 21 | - | – | |
| Phobius | 89 | 107 | 19 | - | – | |
| SUPERFAMILY | 105 | 173 | 69 | 2.62E-14 | ||
| Phobius | 108 | 135 | 28 | - | – | |
| CDD | 108 | 172 | 65 | 7.13132E-26 | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Pfam | 113 | 172 | 60 | 7.8E-10 | ||
| PRINTS | 124 | 150 | 27 | 1.5E-25 | ||
| Phobius | 136 | 146 | 11 | - | – | |
| Phobius | 147 | 172 | 26 | - | – | |
| PRINTS | 151 | 174 | 24 | 1.5E-25 | ||
| TMHMM | 152 | 174 | 23 | - | – | |
| Phobius | 173 | 182 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Proton transmembrane transporter activity | Enables the transfer of a proton from one side of a membrane to the other. | ||
| Cellular component | Proton-transporting two-sector ATPase complex, proton-transporting domain | A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins. | ||
| Cellular component | Proton-transporting V-type ATPase, V0 domain | A protein complex that forms part of a proton-transporting V-type ATPase and mediates proton transport across a membrane. The V0 complex consists of at least four different subunits (a,c,d and e); six or more c subunits form a proton-binding rotor ring. | ||
| Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi5g1v0061800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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