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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0065500 |
| Transcript ID | LotjaGi5g1v0065500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent helicase/nuclease subunit A; TAIR: AT1G04200.3 dyggve-melchior-clausen syndrome protein; Swiss-Prot: sp|Q8BV79|TRNK1_MOUSE TPR and ankyrin repeat-containing protein 1; TrEMBL-Plants: tr|A0A0B2R102|A0A0B2R102_GLYSO TPR and ankyrin repeat-containing protein 1; Found in the gene: LotjaGi5g1v0065500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10912995..10914180) extracted from Lotus japonicus Gifu genome v1.2.
AGTGGACATGTCGGTGGGAAAATTATTGGCTTTGGAGCCGAGCAAGTAATTTTGGTACGAGATAATTCGTCTCGTATGGA AATTTTAGACTACGTAGGGAAACAAGCTCTTGTTCTAACCATTTTAGAGTGCAAGGGCCTCGAGTTTCAGGTTCTTAAAA GATCATGATATCTAATTCAAATTATGTTATTCATGTTGTCTTTTTCGTGATGGTATTCTTTGTTCTTTCCCAGGATGTGT TGCTGTACAACTTTTTTGGCGCTTCACCATTGAAAAGTCGATGGAGGGTGATTTATGAGTATATGAATGAACAAGATATG CTGGAACCAACACAATCATCCTGTCCGAGTTTCAATGATTCCAAACACAATATTTTGTGTTCTGAATTGAAGCAGCTTTA CGTGGCTATAACTCGTACAAGACAGAGATTGTGGATATGTGAGAATACAGCGGAGTTTTCTATACCTATGTTTGATTATT GGAAAAAGAAGGGTCTTGTACAATTCAAAGAACTTGATGATTCTCTTGCTCAGGCAATGAAAGTTGCCAGTAGTCCAGAA GAATGGAAGTCACGTGGCAAAAAGGTTGGTATCATAATCAACTATTATTCTCATTGTGCTTTCTTAATTCTGAATTAAAT TAATTTATCCTACAATTTTTCCCTTAGCTCAAATCATAGTTTAATGATGATTTATCAGGTTTTTATTATATTTTGATTTG CAATTTACAATATCTTTGTACCTCAGATTATGTTATGCTATGCAAGTGTTTCCCTTAAGCGCGTAATTAAACTGTTTTCC CAAACGCACCTTATATTATCAATGGGTTTTATCTATCTACTTTTTCCTTCTAATTATCATATCATTTTGAATGTTCCCTT GCAGCTATATTATCAAAATAACTTCGAGATGGCGACAATGTGTTTCGAAAGAGCAGGGGACTCTTATTGGGAGCAGAAGT CTAAAGCTGCTGGTCTTAGGGAAACTGCAAACCGTTTGCGTGATATTAATCCTGAGGATGCAAATGCAATCCTTAGAGAA GCTGCTGAAATTTTTGAAGATATAAGAATGGCTGATTCTGCTGCCCAGTGTTTTTCTGATCTAGGGGACTATGTAAGAGC TGGTATGAACTTGAACTTTGGGATCTAATCCTAAGTTTTGTGCCATTTGTTTGGGAAAGATTTTAA
CDS sequence (LotjaGi5g1v0065500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATTTTAGACTACGTAGGGAAACAAGCTCTTGTTCTAACCATTTTAGAGTGCAAGGGCCTCGAGTTTCAGGATGT GTTGCTGTACAACTTTTTTGGCGCTTCACCATTGAAAAGTCGATGGAGGGTGATTTATGAGTATATGAATGAACAAGATA TGCTGGAACCAACACAATCATCCTGTCCGAGTTTCAATGATTCCAAACACAATATTTTGTGTTCTGAATTGAAGCAGCTT TACGTGGCTATAACTCGTACAAGACAGAGATTGTGGATATGTGAGAATACAGCGGAGTTTTCTATACCTATGTTTGATTA TTGGAAAAAGAAGGGTCTTGTACAATTCAAAGAACTTGATGATTCTCTTGCTCAGGCAATGAAAGTTGCCAGTAGTCCAG AAGAATGGAAGTCACGTGGCAAAAAGCTATATTATCAAAATAACTTCGAGATGGCGACAATGTGTTTCGAAAGAGCAGGG GACTCTTATTGGGAGCAGAAGTCTAAAGCTGCTGGTCTTAGGGAAACTGCAAACCGTTTGCGTGATATTAATCCTGAGGA TGCAAATGCAATCCTTAGAGAAGCTGCTGAAATTTTTGAAGATATAAGAATGGCTGATTCTGCTGCCCAGTGTTTTTCTG ATCTAGGGGACTATGTAAGAGCTGGTATGAACTTGAACTTTGGGATCTAA
Protein sequence (LotjaGi5g1v0065500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEILDYVGKQALVLTILECKGLEFQDVLLYNFFGASPLKSRWRVIYEYMNEQDMLEPTQSSCPSFNDSKHNILCSELKQL YVAITRTRQRLWICENTAEFSIPMFDYWKKKGLVQFKELDDSLAQAMKVASSPEEWKSRGKKLYYQNNFEMATMCFERAG DSYWEQKSKAAGLRETANRLRDINPEDANAILREAAEIFEDIRMADSAAQCFSDLGDYVRAGMNLNFGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 223 | 222 | 1.2E-122 | ||
| Gene3D | 5 | 103 | 99 | 1.7E-10 | – | |
| SUPERFAMILY | 9 | 94 | 86 | 1.06E-7 | ||
| Pfam | 12 | 94 | 83 | 2.1E-6 | ||
| CDD | 13 | 94 | 82 | 1.87024E-4 | – | |
| Gene3D | 108 | 226 | 119 | 7.2E-6 | ||
| SUPERFAMILY | 126 | 218 | 93 | 2.17E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi5g1v0065500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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