Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0065500 |
| Transcript ID | LotjaGi5g1v0065500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TPR and ankyrin repeat-containing protein 1; TAIR: AT2G21870.1 MALE GAMETOPHYTE DEFECTIVE 1; Swiss-Prot: sp|Q8BV79|TRNK1_MOUSE TPR and ankyrin repeat-containing protein 1; TrEMBL-Plants: tr|A0A0B2R102|A0A0B2R102_GLYSO TPR and ankyrin repeat-containing protein 1; Found in the gene: LotjaGi5g1v0065500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10912995..10917396) extracted from Lotus japonicus Gifu genome v1.2.
GGAATATGGAGGCCCCCATGAGTTGGGAAAGATCAATAGATATCATCAAGTTTAAGAATATTGGTAATCATGGAAATGAA GCAGAAATAAGTGGTTGTGATGAAAGAATTTATGTTGAGAATTCAAAGGTAGAGGAGAGTTTGTTATTGATGAAATTCTA CCCCTTATCATTAGTTGTGGTTAGCCACTTGCTTTCTGATCATAACAGCAATGAATTGGATCTTCCATTTGAAGTATCAG ATGAAGAACGTGAGATAATTCTGTTTCCTAAAAGTACATTTGTATTGGGCCGCTCTGGTACTGGAAAAACAACTGTTTTG ACCATGAAGTTATTTCAAAAGGAGAACTTGCACCATATGGCTCTTGAAGCAACATATGGAATTAAGAGTGGTGCATTTCC TTTTGTGAATTGTGATAAAGAGCAGGAAGAAAACTCTGATGGGAATGACAGGCCTGTCTTACGCCAATTATTTGTAACAG TGAGTCCTAAACTATGTCAAGCGGTTAAACATCATGTTGTTCGATTGAAAAGGTGTGGAACCTCTACCTCAAACTATCTT CTTGTCTTTCTTTCTTTCTTTCTAAGATAAGTAACAAACAAAATATTGTTTGAATTTGAGACGAGCTAGCTAATTTTTTA ATAATCTCTTTTATAGTCTATCTGGCCATTTGTTGTTTGTGTCTATATGTTTGACTTTTGAAATACTTAGGTTATATTAA AACTGAATGATTTAATTATCATTGTATACTTATATGCAAGTAGAAAATAACTTATTGGAAGCTTTTTGTGTTATGTTTCT CTGTCCTTTTTTCATGGAATATGTTTTCATTAGCTAAGAGAACTGTGGTGAAACTTGAAACTCTGTAAATTTGAAAGGTA TGACTGTATACTATATAGAGGCGATAGTTTAGCCAATAGTATTTCATGAAATGTTATATTTCTATAACAAATATTTTCCA TTTTTTGTTGTTATTTTTAAAAAAATTAGTAGGTCTCAATAAGCTTTTGTTAGTATAAATAGCTTTGCAGATTGTTGTGT TCAAAGTGGATGGAAGGTGGAATCAAAGAGCAATGGTTTTTTAAGAGGTTTTTCTTTTATAAGTGTTGTAATTATTTTTA ATATAATACTTGACCCCCACAAATTGAACCGAAAAAACTCAATATGGGTCTCCATCATACACATGTATTTTTCTAAAATA GGTATAAGTATTATTTGAATGCATGTGTTATAAGTTGTGAAGTAATTTATTGTCAAATGAAAATTTTTATGGATCAACTT TCCTTAAAGTTGATGCTATTAACTTATTAAGTGAAGAATCGTTAGTGGTTTTATATTCAATATTCCGTTCTCATAGAGTT AATTTAGCCTGAAACAAGTACAGTGCATGAACTCAATTTTTCCTGTACTTAAATTTTTTTTTTATAGAGATTTGGGTGGC TAAGGTATTCTTGACCACTTCATCAAAATAATTTGATTTAACCACATGTTAATTACAAATTTTCCTATCATTTTATATTC ATTTATATTACAAATTAAATTTCTATAGTAATTTGGTCGTCAAAAGCAATCTTCACCTCCTATTTACTTCAACAAAAGCT AACCTAAAAGCATGCTCTCGGAAGCAAATAATTTTTTATGTAACTATTACTAATCTTTTTATCTTATTTGTACGTGTTCT TTAATTACATTCACCATGATTTTCAATATCTTGAGCAATTTATGTTGATCTCTATACATTAGTTTCTGTATAATTTTTTT GATCTCTGTACATTAGTTCTTAAGTTTATGTTTTATTCCCCTTATCACTGTTTTGGTCAGACTATTTTAATTGTTTGTGA TCAGTGGTCCAGTGTAGTGATACTATAACTTTTTTTTTCTTTTTTTAACTTTGATATAAGGTTTTATTTTGTCATTTAAT TTGTTGATTGATATTTTTTTTAAGAACAAATTATGTGCTGAATTGCATTATATTTCTTCTGTGCGACTATAATATCCATG TTGTTTCAGTTTTAGAAATATGTAATGGTGTTGAAGTTACTCTATTGTGAGTCCTTTTTTCTGGAGTCATTATAGTATAC TCTGCAAATCTGTTGAAATAATTTGGCCTCATGTACTTTCATTGATTTGATTGGTATCTAATATTATTAGACCATGTGAT TCATGCAGATCCATCTGCGATAGCAATATTTCCGCTGAAAGTAGTTCTATTAAGGAAGATGTTGATGTTGATACATCAAT TCAGTTTAAGGACATACCAGATTCTTTCTTTAATCTTCCAGCCAACTCATACCCACTTGTGATAACATTTCAGAAGTTTC TGATGATGCTTGATGGGACTGTGGGGAATTCATATTTTGAAAGATTTAGTGACCTATGTTCGCATACTCCAAACCTTGGT GTAAAAACTGTTGCTTTAGAGACATTCATAAGGAAGAAGGAGGTGACTTATGATAGGTTTGATTCTTTGTATTGGCCACA CTTTAATTGCCAATATACTAAGAGTCTAGATCCATCTAGAGTGTTCACTGAAATTATATCTCATATAAAAGGGGGTATGC AAGCAATGGAGCGTGGTGATGGTAAGCTAAGTCGTGAGGATTATCTTTCCTTATCTGAAAACCGAGCATCAAGTTTGAGC AAACAGAAAAGAGTGATGATATATGATATTTATCAAAGTTATGAAAAAATGAAGATGGACAAAGGGGATTTCGATTTGGC TAATATTGTAGCTGACCTTCATCGTAGACTCAGAACCAAAAGATATGAGGGTGATGAAATGCATTTTGTGTATATTGATG AGGTTCAAGATCTCACCATGGGCCAAATTGCTTTGTTTAAATATGTGTGCCCAAATGTAGAAGAGGGTTTTGTTTTTTGT GGGGATACAGCACAAACAATAGCAAGGGGAATTGATTTCAGGTTCCAGGATATAAAATCTCTATTTTACAAGAAGTTTGT TCTAGAATCCAGGAGAAGTTCATATAATCAGGTAAAGGAGAAAGGGTTAATTTCAGATATCTTTTTATTGAATCAGAACT TTCGGACTCATGCTGGAGTGCTGAAATTATCCCAGAGCATCATTGAACTTCTTTTCCGGTTTTTTCCTCTTTCTGTTGAT GTTCTGAAGCCTGAGACCAGCTTGATTTATGGGGAAGCTCCAGTTGTTCTTGAATGTGGAAATAGGAAAAATGCAATTGT AACTATTTTTGGCAATAGTGGACATGTCGGTGGGAAAATTATTGGCTTTGGAGCCGAGCAAGTAATTTTGGTACGAGATA ATTCGTCTCGTATGGAAATTTTAGACTACGTAGGGAAACAAGCTCTTGTTCTAACCATTTTAGAGTGCAAGGGCCTCGAG TTTCAGGTTCTTAAAAGATCATGATATCTAATTCAAATTATGTTATTCATGTTGTCTTTTTCGTGATGGTATTCTTTGTT CTTTCCCAGGATGTGTTGCTGTACAACTTTTTTGGCGCTTCACCATTGAAAAGTCGATGGAGGGTGATTTATGAGTATAT GAATGAACAAGATATGCTGGAACCAACACAATCATCCTGTCCGAGTTTCAATGATTCCAAACACAATATTTTGTGTTCTG AATTGAAGCAGCTTTACGTGGCTATAACTCGTACAAGACAGAGATTGTGGATATGTGAGAATACAGCGGAGTTTTCTATA CCTATGTTTGATTATTGGAAAAAGAAGGGTCTTGTACAATTCAAAGAACTTGATGATTCTCTTGCTCAGGCAATGAAAGT TGCCAGTAGTCCAGAAGAATGGAAGTCACGTGGCAAAAAGGTTGGTATCATAATCAACTATTATTCTCATTGTGCTTTCT TAATTCTGAATTAAATTAATTTATCCTACAATTTTTCCCTTAGCTCAAATCATAGTTTAATGATGATTTATCAGGTTTTT ATTATATTTTGATTTGCAATTTACAATATCTTTGTACCTCAGATTATGTTATGCTATGCAAGTGTTTCCCTTAAGCGCGT AATTAAACTGTTTTCCCAAACGCACCTTATATTATCAATGGGTTTTATCTATCTACTTTTTCCTTCTAATTATCATATCA TTTTGAATGTTCCCTTGCAGCTATATTATCAAAATAACTTCGAGATGGCGACAATGTGTTTCGAAAGAGCAGGGGACTCT TATTGGGAGCAGAAGTCTAAAGCTGCTGGTCTTAGGGAAACTGCAAACCGTTTGCGTGATATTAATCCTGAGGATGCAAA TGCAATCCTTAGAGAAGCTGCTGAAATTTTTGAAGATATAAGAATGGCTGATTCTGCTGCCCAGTGTTTTTCTGATCTAG GGGACTATGTAAGAGCTGGTATGAACTTGAACTTTGGGATCTAATCCTAAGTTTTGTGCCATTTGTTTGGGAAAGATTTT AA
CDS sequence (LotjaGi5g1v0065500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCCCCCATGAGTTGGGAAAGATCAATAGATATCATCAAGTTTAAGAATATTGGTAATCATGGAAATGAAGCAGA AATAAGTGGTTGTGATGAAAGAATTTATGTTGAGAATTCAAAGGTAGAGGAGAGTTTGTTATTGATGAAATTCTACCCCT TATCATTAGTTGTGGTTAGCCACTTGCTTTCTGATCATAACAGCAATGAATTGGATCTTCCATTTGAAGTATCAGATGAA GAACGTGAGATAATTCTGTTTCCTAAAAGTACATTTGTATTGGGCCGCTCTGGTACTGGAAAAACAACTGTTTTGACCAT GAAGTTATTTCAAAAGGAGAACTTGCACCATATGGCTCTTGAAGCAACATATGGAATTAAGAGTGGTGCATTTCCTTTTG TGAATTGTGATAAAGAGCAGGAAGAAAACTCTGATGGGAATGACAGGCCTGTCTTACGCCAATTATTTGTAACAGTGAGT CCTAAACTATGTCAAGCGGTTAAACATCATGTTGTTCGATTGAAAAGATCCATCTGCGATAGCAATATTTCCGCTGAAAG TAGTTCTATTAAGGAAGATGTTGATGTTGATACATCAATTCAGTTTAAGGACATACCAGATTCTTTCTTTAATCTTCCAG CCAACTCATACCCACTTGTGATAACATTTCAGAAGTTTCTGATGATGCTTGATGGGACTGTGGGGAATTCATATTTTGAA AGATTTAGTGACCTATGTTCGCATACTCCAAACCTTGGTGTAAAAACTGTTGCTTTAGAGACATTCATAAGGAAGAAGGA GGTGACTTATGATAGGTTTGATTCTTTGTATTGGCCACACTTTAATTGCCAATATACTAAGAGTCTAGATCCATCTAGAG TGTTCACTGAAATTATATCTCATATAAAAGGGGGTATGCAAGCAATGGAGCGTGGTGATGGTAAGCTAAGTCGTGAGGAT TATCTTTCCTTATCTGAAAACCGAGCATCAAGTTTGAGCAAACAGAAAAGAGTGATGATATATGATATTTATCAAAGTTA TGAAAAAATGAAGATGGACAAAGGGGATTTCGATTTGGCTAATATTGTAGCTGACCTTCATCGTAGACTCAGAACCAAAA GATATGAGGGTGATGAAATGCATTTTGTGTATATTGATGAGGTTCAAGATCTCACCATGGGCCAAATTGCTTTGTTTAAA TATGTGTGCCCAAATGTAGAAGAGGGTTTTGTTTTTTGTGGGGATACAGCACAAACAATAGCAAGGGGAATTGATTTCAG GTTCCAGGATATAAAATCTCTATTTTACAAGAAGTTTGTTCTAGAATCCAGGAGAAGTTCATATAATCAGGTAAAGGAGA AAGGGTTAATTTCAGATATCTTTTTATTGAATCAGAACTTTCGGACTCATGCTGGAGTGCTGAAATTATCCCAGAGCATC ATTGAACTTCTTTTCCGGTTTTTTCCTCTTTCTGTTGATGTTCTGAAGCCTGAGACCAGCTTGATTTATGGGGAAGCTCC AGTTGTTCTTGAATGTGGAAATAGGAAAAATGCAATTGTAACTATTTTTGGCAATAGTGGACATGTCGGTGGGAAAATTA TTGGCTTTGGAGCCGAGCAAGTAATTTTGGTACGAGATAATTCGTCTCGTATGGAAATTTTAGACTACGTAGGGAAACAA GCTCTTGTTCTAACCATTTTAGAGTGCAAGGGCCTCGAGTTTCAGGATGTGTTGCTGTACAACTTTTTTGGCGCTTCACC ATTGAAAAGTCGATGGAGGGTGATTTATGAGTATATGAATGAACAAGATATGCTGGAACCAACACAATCATCCTGTCCGA GTTTCAATGATTCCAAACACAATATTTTGTGTTCTGAATTGAAGCAGCTTTACGTGGCTATAACTCGTACAAGACAGAGA TTGTGGATATGTGAGAATACAGCGGAGTTTTCTATACCTATGTTTGATTATTGGAAAAAGAAGGGTCTTGTACAATTCAA AGAACTTGATGATTCTCTTGCTCAGGCAATGAAAGTTGCCAGTAGTCCAGAAGAATGGAAGTCACGTGGCAAAAAGCTAT ATTATCAAAATAACTTCGAGATGGCGACAATGTGTTTCGAAAGAGCAGGGGACTCTTATTGGGAGCAGAAGTCTAAAGCT GCTGGTCTTAGGGAAACTGCAAACCGTTTGCGTGATATTAATCCTGAGGATGCAAATGCAATCCTTAGAGAAGCTGCTGA AATTTTTGAAGATATAAGAATGGCTGATTCTGCTGCCCAGTGTTTTTCTGATCTAGGGGACTATGTAAGAGCTGGTATGA ACTTGAACTTTGGGATCTAA
Protein sequence (LotjaGi5g1v0065500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAPMSWERSIDIIKFKNIGNHGNEAEISGCDERIYVENSKVEESLLLMKFYPLSLVVVSHLLSDHNSNELDLPFEVSDE EREIILFPKSTFVLGRSGTGKTTVLTMKLFQKENLHHMALEATYGIKSGAFPFVNCDKEQEENSDGNDRPVLRQLFVTVS PKLCQAVKHHVVRLKRSICDSNISAESSSIKEDVDVDTSIQFKDIPDSFFNLPANSYPLVITFQKFLMMLDGTVGNSYFE RFSDLCSHTPNLGVKTVALETFIRKKEVTYDRFDSLYWPHFNCQYTKSLDPSRVFTEIISHIKGGMQAMERGDGKLSRED YLSLSENRASSLSKQKRVMIYDIYQSYEKMKMDKGDFDLANIVADLHRRLRTKRYEGDEMHFVYIDEVQDLTMGQIALFK YVCPNVEEGFVFCGDTAQTIARGIDFRFQDIKSLFYKKFVLESRRSSYNQVKEKGLISDIFLLNQNFRTHAGVLKLSQSI IELLFRFFPLSVDVLKPETSLIYGEAPVVLECGNRKNAIVTIFGNSGHVGGKIIGFGAEQVILVRDNSSRMEILDYVGKQ ALVLTILECKGLEFQDVLLYNFFGASPLKSRWRVIYEYMNEQDMLEPTQSSCPSFNDSKHNILCSELKQLYVAITRTRQR LWICENTAEFSIPMFDYWKKKGLVQFKELDDSLAQAMKVASSPEEWKSRGKKLYYQNNFEMATMCFERAGDSYWEQKSKA AGLRETANRLRDINPEDANAILREAAEIFEDIRMADSAAQCFSDLGDYVRAGMNLNFGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 773 | 772 | 0.0 | ||
| ProSiteProfiles | 74 | 470 | 397 | 15.101 | ||
| SUPERFAMILY | 76 | 647 | 572 | 7.53E-36 | ||
| Pfam | 321 | 420 | 100 | 6.5E-7 | ||
| Gene3D | 464 | 661 | 198 | 2.1E-10 | – | |
| CDD | 541 | 644 | 104 | 1.41697E-5 | – | |
| SUPERFAMILY | 676 | 768 | 93 | 1.39E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi5g1v0065500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…