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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0065800 |
| Transcript ID | LotjaGi5g1v0065800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein; TAIR: AT4G31420.1 Zinc finger protein 622; Swiss-Prot: sp|Q8H1G5|REIL1_ARATH Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1; TrEMBL-Plants: tr|I3SNF7|I3SNF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0065800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10947992..10951436) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATTAACAAACGAAAGCATAAATGTGTCATGCGTTACGTATGTTATGATGCCCACCCAAAACACAGACCCTAATTTT TCTTGACCGATTGGCCGACATCGAACCATCACCTCCTGCTATATAATCCTCATTTACATTCACTTTTCAGGTTCCATTTC ATCTCCTTCAGCCAACAAAAATCCAAACCCTCACTCACTATGCCAGGATTAACCTGCAACGCTTGCAACACTGAGTTCAT CGATGACGCCGACCAAAAACTCCATTACAAATCCGAGTGGCACCGCTACAATCTCAAACGCAAGGTCCTTATTCTTTTCA TTTTGTTCATCGATTCATTCATTTATTTCGTTAATTTACTAGAAATTTGCATATCTTAAACCCTAATTTTATATTTTTTT GAATTTTTTTTTATTGATGGTTCAATCGACAAAAATGAAGAATATAAACATATGGTTGTGCTTAGAGTAACCAATGATAA ATTATGTTATTTCAGTTTCTGATTTATCGTGTTTTTTGTTTTCTGATTTAGGGTTGTGGGTTAATTGGTAGGATATAAGA ACTTTGAATCATAACTGTTTGGAATTTGATTAAGTAATTGTTGAGGATATAGTTTTTCGGGAGATTATTGCAATTACAGT GAGGATTTAAGCCAGTGTTGTCAAATTGTGATGGTCGGCGATCGCGGTGAGCCAAAATTCCGCTATTTAGCTGCAAATAG CGGGAATAGCGCGCTATTGTGGGCAATAGCGGCATCACGATTAGCCAAAATTCCGCGACGCTTGCACTGCTATTTGATAA CGCTGATTTAAGCTTGTAAATTATTAGCTTTGAAAGCATTCTGTTGACGAATTTTCTGGTGGTTATGTTGTTTGAAGAAC ATGATTTGTTTCTAGATGATATTGAAATTACAGGTTTTTTTGTTTGTTTTTTAAAAATGAATAGGTGGCTGGGGTTCCTG GGGTGACTGAAGCTCTGTTTCTGGCTAGACAAGCCGCTCTTGCTGAAGAGAAAGACAAAGCAAATGAAACCGCCATGCTC TATAGCTGTGGCCTCTGTGGGAAGGGTTATAAGAGTTCTAAGGCTCATGCTGAGCATCTTAAGTCACGTGGTCACTTGAT GCGTGTTTCTGAAGGAACTAGTCAATCGGATGAGAAGGCAATAGTTAAGCCACTTCCACAACGTTCTGCGAATAGGCCTC CTCCGAGAAGAGAGGTACAGGTCTCTGAAGATGGAGAAAGTGAAGATGAATGGGAGGAGGTTGACCCAGAAGATGATTTG GTTGGCGATGCTGCGAAGTCCTTGACTGAAATGAATGTGGATGAGGATGCTGACAATGATGATGATATGGATGAAGATGA TGATGATACTTTTGAGGAGTTAGATCCAGCTTGTTGCTTTATGTGCGATCAAGGGCACAACACAATAGAAAACTGCATGG TTCACATGCACAAGCACCATGGTTTCTTCATTCCAGATATTGAGTATTTGAAGGATCCAAAAGGCCTCCTCACTTATCTT GGCCTTAAGGTATATAATTTTGTCACTCCCCATCCCTAAAAGAAAATAGGTCCTAATTTCGCTAACATTTTCCCATTTTC TTTTCTAGGTCAAACGGGACTACATGTGTCTGTACTGCAATGACCGATGTTATCCTTTCAGCAGCTTGGAAGCAGTCAGG AAACATATGGTGGCAAAAAGTCACTGTAAAGTGCATTTTGGTGATGGAGATGATGAGGAGGAAGTAGAGTTAGAAGATTT CTACGATTACAGCAGCAGGTTAGTTTAGTTGCTACTGATTTATGTTGAATTTCTCATTATTTATAAGCATGTTTAGATCA AGTTTTCTTTTATCAAAAATCAATTATCTCACCACCCATATAAGCTTCCCTCCAGAATTGTTTTTGGCTATAGAATCGAT TATACAAAACTTCGAAACATGCCCTTACCGGTAACTGGTTTGGGCTATTGATATTTGATATATGAAATCTCAAATATTAC TATTTTTTTTTGCAGTTATGTGGATGAGCAAGGTGAGCAGCTTGTTGTATCTGGTGATACAACCAACAACATAGAACTTT TTGGGGGGTCTGAGCTCGTAATCAGTAGGAAATCTGGTGATAAAACATCAACCAGAACACTAGGTTCACGTGAATTTTTG CGTTATTATCGTCAGAAACCACGGCCATCACCAGCAAATATGGCCATCACTGCTGCATTGGCTTCAAGGTTTGTCTTTTT AACCTTAACTCTTTTGTTGGTAATGCTAAGGGAAAACATTTGGTGTACCTCAAGTAAATCATAAATTCACATGGTAATTA GGAACTATCTATTTATTTTCAGGTACCGGAGCATGGGTTTGGCTACAGTCCAATCAAGGGAGCAAATTGTGAGGATGAAA GTTCTGAAACAAATGAGCAAGACTGGTGTGGAGAATATGCGCAGCAAAATGGGGATGAAGAGTAATGTCATTCGTAACCT GCCAAAGAATTGCACGTATTAGTTCTCTTGCTCTCTCTGCTGTTGCACTTATCAGTTTGAAATTTGGGCAGTTTTGTGTA ATAGTTATCTAGCTACAAGCTCCCTCCCCTTCTTATTAAGCAGTTTACATTTCTTAATGAAGCGACTATATTTTGTCTTA CAGAGATGTTTGAATATTCGCTTATTTATTTGCTGTTGAGTGTATCATGAGCAACCGGATGATAAAGGCTTGCTTTTGAG AGATGTTGGAATAATTAGATTTCTTTGGTTGATGCAAATTTTGGGGTACTGAAAATAAAATAACAATGTTTTTTAAAGTA TGGTTTGCTTTTCTTTTTGGGTGAGGGAGAGGATCGAAGAAAGGGTTTGTATATCCAACACAGTATTAATAACAGACTAG ACTGACCGGTTTAATTGTTTGGGCTGTTGGTGGTTGACCAGTCGGCTATACAAACTGGGTTGAAAGGAGTGAGTGAGAAC GGGAGCCTCCAAAGGTGGTTTGAGAGATGAGACATGGTGAAGATTGTCATTTTTAGAGATCTCCGTAGCAGTATCTTAGT TTGAAAGGAGTGAGTGAGAACGGGAGCCTCCAAAGGTGGTTTGAGAGATGAGACATGGTGAAGATTGTCATTTTTAGAGA TCTCCGTAGCAGTATCTTAGTTTGAAAGGAGTGAGTGAGAACGGGAGCCTCCAAAGGTGGTTTGAGAGATGAGACATGGT GAAGATTGTCATTTTTAGAGATCTCCGTAGCAGTATCTTAGTTTGAAAGGAGTGAGTGAGAACGGGAGCCTCCAAAGGTG GTTTGAGAGATGAGACATGGTGAAGATTGTCATTTTTAGAGATCTCCGTAGCAGTATCTTAGTTTGAAAGGAGTGAGTGA GAACGGGAGCCTCCAAAGGTGGTTTGAGAGATGAGACATGGTGAAGATTGTCATTTTTAGAGATCTCCGTAGCAGTATCT TAGTT
CDS sequence (LotjaGi5g1v0065800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGGATTAACCTGCAACGCTTGCAACACTGAGTTCATCGATGACGCCGACCAAAAACTCCATTACAAATCCGAGTG GCACCGCTACAATCTCAAACGCAAGGTGGCTGGGGTTCCTGGGGTGACTGAAGCTCTGTTTCTGGCTAGACAAGCCGCTC TTGCTGAAGAGAAAGACAAAGCAAATGAAACCGCCATGCTCTATAGCTGTGGCCTCTGTGGGAAGGGTTATAAGAGTTCT AAGGCTCATGCTGAGCATCTTAAGTCACGTGGTCACTTGATGCGTGTTTCTGAAGGAACTAGTCAATCGGATGAGAAGGC AATAGTTAAGCCACTTCCACAACGTTCTGCGAATAGGCCTCCTCCGAGAAGAGAGGTACAGGTCTCTGAAGATGGAGAAA GTGAAGATGAATGGGAGGAGGTTGACCCAGAAGATGATTTGGTTGGCGATGCTGCGAAGTCCTTGACTGAAATGAATGTG GATGAGGATGCTGACAATGATGATGATATGGATGAAGATGATGATGATACTTTTGAGGAGTTAGATCCAGCTTGTTGCTT TATGTGCGATCAAGGGCACAACACAATAGAAAACTGCATGGTTCACATGCACAAGCACCATGGTTTCTTCATTCCAGATA TTGAGTATTTGAAGGATCCAAAAGGCCTCCTCACTTATCTTGGCCTTAAGGTCAAACGGGACTACATGTGTCTGTACTGC AATGACCGATGTTATCCTTTCAGCAGCTTGGAAGCAGTCAGGAAACATATGGTGGCAAAAAGTCACTGTAAAGTGCATTT TGGTGATGGAGATGATGAGGAGGAAGTAGAGTTAGAAGATTTCTACGATTACAGCAGCAGTTATGTGGATGAGCAAGGTG AGCAGCTTGTTGTATCTGGTGATACAACCAACAACATAGAACTTTTTGGGGGGTCTGAGCTCGTAATCAGTAGGAAATCT GGTGATAAAACATCAACCAGAACACTAGGTTCACGTGAATTTTTGCGTTATTATCGTCAGAAACCACGGCCATCACCAGC AAATATGGCCATCACTGCTGCATTGGCTTCAAGGTACCGGAGCATGGGTTTGGCTACAGTCCAATCAAGGGAGCAAATTG TGAGGATGAAAGTTCTGAAACAAATGAGCAAGACTGGTGTGGAGAATATGCGCAGCAAAATGGGGATGAAGAGTAATGTC ATTCGTAACCTGCCAAAGAATTGCACGTATTAG
Protein sequence (LotjaGi5g1v0065800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPGLTCNACNTEFIDDADQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQAALAEEKDKANETAMLYSCGLCGKGYKSS KAHAEHLKSRGHLMRVSEGTSQSDEKAIVKPLPQRSANRPPPRREVQVSEDGESEDEWEEVDPEDDLVGDAAKSLTEMNV DEDADNDDDMDEDDDDTFEELDPACCFMCDQGHNTIENCMVHMHKHHGFFIPDIEYLKDPKGLLTYLGLKVKRDYMCLYC NDRCYPFSSLEAVRKHMVAKSHCKVHFGDGDDEEEVELEDFYDYSSSYVDEQGEQLVVSGDTTNNIELFGGSELVISRKS GDKTSTRTLGSREFLRYYRQKPRPSPANMAITAALASRYRSMGLATVQSREQIVRMKVLKQMSKTGVENMRSKMGMKSNV IRNLPKNCTY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 410 | 410 | 2.3E-199 | – | |
| PANTHER | 1 | 410 | 410 | 2.3E-199 | ||
| SMART | 1 | 35 | 35 | 0.0015 | ||
| SUPERFAMILY | 3 | 36 | 34 | 1.01E-5 | ||
| SMART | 4 | 28 | 25 | 85.0 | ||
| ProSitePatterns | 6 | 28 | 23 | - | ||
| SUPERFAMILY | 65 | 98 | 34 | 2.66E-5 | ||
| SMART | 65 | 99 | 35 | 9.7 | ||
| SMART | 68 | 92 | 25 | 1.8 | ||
| ProSitePatterns | 70 | 92 | 23 | - | ||
| MobiDBLite | 89 | 177 | 89 | - | – | |
| MobiDBLite | 131 | 146 | 16 | - | – | |
| MobiDBLite | 161 | 177 | 17 | - | – | |
| SUPERFAMILY | 171 | 243 | 73 | 1.01E-7 | ||
| SMART | 184 | 206 | 23 | 120.0 | ||
| Pfam | 186 | 287 | 102 | 1.4E-24 | ||
| Gene3D | 229 | 267 | 39 | 1.8E-5 | – | |
| SMART | 235 | 262 | 28 | 7.2 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0065800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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