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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0066400 |
| Transcript ID | LotjaGi5g1v0066400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G24870.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q7XTV7|HIP1_ORYSJ Probable E3 ubiquitin-protein ligase HIP1; TrEMBL-Plants: tr|K7MMR0|K7MMR0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0066400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11024982..11028575) extracted from Lotus japonicus Gifu genome v1.2.
TTTTATATTATTGTTGTTTCTTTGAGTTTGGCATGAGCTATTCATATTGAAGACTTTCATGTCATTACTGAGTTCTTAGT TGCTTCTTGTGTAACCAATTCATGAATGTTGCTTTGTAGTTTAGGATTGGATCATGATGTTTTCTTCCTGTTCCTTCTGA TCATCATCTAATCATGTATTAGTTTCTTTCTTCTTTTCCCTTTTTCCTGATTTCATTTCTGTTTTAAATCATTCCAGCTA AGTATTATTGTTGATAATCTGGGTTTATGGTCCCTTTCATAGTATTGGCAATCCAATTAAACGGCGTTACCGATTATGAT AATAAGGTGCATGTGTGCTTATTGTCATTGATTAATACCTTGTTGGTTAACAAGGAGTCTCTGTTTGAGAACCATACAAT CTTAAAGTTTGAATATTATTTATGCTTTGTCAGTTATTGCTATTTTTTCAGTGCTTTGTTTTTCTTCAGTATGATGGCCC TTTATAAAGTGTTTGATCATCTTATTACTACTACATCATGTCGATGTGTTGCAGATTTGAAGGTGATAAACAATTGATGG GTGAATATTCTGGTAAAAGAGGCATTAATGGGGTGGTAGTCCCTAGAAAAAATATGGGCCTTTTATTTAGAGATACTGCT AATACTAGAGATCGAAATGGAAAAAATTGCAGTCGACTGGGCTGCAGCAGCAAAGTTAACCCTATGAAAGTTGCTCATAT CAGATCTTCTGAAGAAGGTATATCTTTGAGGTCTTCAATGCGGTCCTCTTCAAGTTGCAAGGAGGCTATTGGATGTTCCT CTAGAACGACTAGAAACCCAGGAAAACCCTCTATAGAGCGTCAGAAAATGTTATCCTTCGAGTCAGATTCATCTGATACA CTGCTGAAAAGGAATTCAATAGAGTCTAGTAATGTGATGCGAATGAAAGTACAAAGCTCTAGTGTAGCATCAGATACCCA ATCTCAAAGGAATTTTGATCGAAGGCCTGGGCTACGTCAGCAAGAAATTAAAAGTACTAGTCCCGTGACACGTGCTGTTG CTAGCAAGTATGGGCTGCAAAACCTCAGATGCAACACTATATCTGACATTATCCCAACTGGTTGTTCATCATCAGATTCA ACCTTTAATAAAAGGAAGGGAATGATAAAAAAGAGAAACTGTGAGGGGGAAAGTAGTTCCACTGTTAGAGGGAAAAAGAT GACGGGCTCTTCAATGGAAGGACTGAATTCTGGCCCTAGAAATTCCATATGTATATCCGATTCAAGAAGATCCATAAATG TTCCTTCTCACAGGGACAGTATCACAGCATCAGTTAGAGCTCAAAGATCAATTAGTAGTCGTGCTAGGGGAAGATTTTCT AGCCAAGGAAATGAACACCAAAGGGCGACTAATGTGTCCCCTGTTACGGTACCTCTATTGCCTCATTCTGGCAATGCTCC TGGCATTTCATACCCTTTAGGTCGTCCAAGCTCTTTTAGTAGACCAATTTCTAGCAGTGAGCAGTTGTATGGTGTTATGC CTGTATCTCCTGCAGAATATAGCACTGCTCTAACTAGTCAGGACCGCTTTCGTCGCTACAACATAGATGGTATTGCAGAG GTAAGTGTCCTTTTAAACACATGAAGACATACTGGTTAATATGCTCTTCGATGAAAGAACTTACAAATAAAGTTTTTTTT TGGATGTAGGTATTATTGGCACTTGAGAGAATAGAACAAGATGAAGAGCTAACCCACGAGGTAATTTTTAAGCAAAAGTT AACTCGATATAGTTGGTAAGTTATTTGACTCTTTCGTTTGTGTCTTTGCAGCAAATTCTCTTACTAGAGACCAACTTGTT CCTTAGTGGACTAAACTTTGATCATCATAGAGACATGCGGTTGGATATTGACAGCATGTCATATGAGGTATATTAATGTA ATAAGGTTCTATATATCAGCTTATCACATCCATTTCTCATATCAAAGTATTTTCGGCAACGTATTTTTAAGAGTGCATGT TTCAAAAAGGTATACCTAGGCCTGTTGCTGTTTATGGTAAAGGAGGGAGGTTGGTAAGGTAACTGTTTAGGAGGTGATTT TGAGAAGAGATTACTATCCTTGTGGATGCAGCATGCTTAGGCTTAAAACCTATAAATTTTCTTTTTTATATCAATGATAG GAACTCTTATCTCTGGAAGAGAAGATGGGAACTGTAAGCACAACTCTAACAGAGGAAGCACTTTCAGCATGCCTCAAGAG AAGTATCTTTGAGCCTGGACCTACAGAAGAAGCAGCTGAGGATTATAATGAGGATAAGGATGATATCAAATGCTGCATTT GCCAGGTATTTGTATAATGAAGCTTTTGTAAGAATGATGCTCATATTACTTTTACATGAAAATGGGGTGTCATTGATCAT CAATATCATCATGGCTCAAATGATATCAAGCCAACGATTTGCCTCATAAATTTTAATTAATGTTTCTGTATCTGATCCTA GCGGATCTAAATTATCCATCGACAAAGGGACAGCAGTGTTTCAGTTTTAAACTTAGTGGTGCTGGTATGCATAACATTGT AAAGGCTCCATCAGTATTTAAGAGTACTAAAATATTTGAACTAAGCACTCATTTGAGTTATTTCTCTTATAACAAGTCTC CAACATTTTCAAGCATAGAAGAGCTCTCTAAGTCTAGTTATGTACGAATCTGGATTGACTGCCGTCACATTTTCAAGCAG TTGTTGAAGTCATTCAATAATAACCATTGGATTTAAATCAGATGGTTCATATCAAATATTGGTAAATCAGATACAAATAC ATGCTAGAAATGGGAGCAGTTGAATCTTAATCAAATAGGTTCGATGTGTGACTGAAGTGCAGTCGACTGCATGTTTACCA GATCCAAGCATATATACCTTCCCTTTTAGGAAAAGAAAAAGTGACCTCATTTTTCCTTTTCTCATAAGAGGAATATATAG AGGTCTAGTGTAGATTTTAATGGATGAATAACAAAACTGCTAAAATTATCTTTTTTCCAAGATCTGATATTGGTACATTA ACCTAAATTTGTAGGAGGAATATATTGTTGCAGATGAAGTTGGCACTCTACAATGCGAGCATATATTTCATGTGGTTTGC ATACAGGAGTGGCTGCGGCTGAAGAATTGGTGCCCTATTTGCAAAGAAGAAGCCGCACTGTCCAATTCATCTTCAACCCA GTGATCGTATTGTTCTTTTCCTTTCGTACAAATGCAGTTGTTCCGCACTCTTCTTATTTTGGTTATATGTACATAGCCAA TATTTTCATTCCATTTACTAATAAGATAAGCCACTGGCTAGCTGTTAATCTGGAGCTCATCCATCTTTTTATTGGAAAAG TTAAGGTAAAGAAGGGAATGAAATTGTCATCTACTAGAAGTTTATAGTGTTGTACTTTTTTGAATTTCTGCTTCTAAATC ATACTGGGGAACCACTTATCATATAAATAGGCTACCTTCCTATTTTTGGGTGGTGCCCGACTGCCAGTTCTATACAACTA GTGACTTCTTTCTTTCCGTCTATCACAGTTATGAACAATCACTAATGGCATGTCTTTGGCTGTGTTTCCTTTCA
CDS sequence (LotjaGi5g1v0066400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGAATATTCTGGTAAAAGAGGCATTAATGGGGTGGTAGTCCCTAGAAAAAATATGGGCCTTTTATTTAGAGATAC TGCTAATACTAGAGATCGAAATGGAAAAAATTGCAGTCGACTGGGCTGCAGCAGCAAAGTTAACCCTATGAAAGTTGCTC ATATCAGATCTTCTGAAGAAGGTATATCTTTGAGGTCTTCAATGCGGTCCTCTTCAAGTTGCAAGGAGGCTATTGGATGT TCCTCTAGAACGACTAGAAACCCAGGAAAACCCTCTATAGAGCGTCAGAAAATGTTATCCTTCGAGTCAGATTCATCTGA TACACTGCTGAAAAGGAATTCAATAGAGTCTAGTAATGTGATGCGAATGAAAGTACAAAGCTCTAGTGTAGCATCAGATA CCCAATCTCAAAGGAATTTTGATCGAAGGCCTGGGCTACGTCAGCAAGAAATTAAAAGTACTAGTCCCGTGACACGTGCT GTTGCTAGCAAGTATGGGCTGCAAAACCTCAGATGCAACACTATATCTGACATTATCCCAACTGGTTGTTCATCATCAGA TTCAACCTTTAATAAAAGGAAGGGAATGATAAAAAAGAGAAACTGTGAGGGGGAAAGTAGTTCCACTGTTAGAGGGAAAA AGATGACGGGCTCTTCAATGGAAGGACTGAATTCTGGCCCTAGAAATTCCATATGTATATCCGATTCAAGAAGATCCATA AATGTTCCTTCTCACAGGGACAGTATCACAGCATCAGTTAGAGCTCAAAGATCAATTAGTAGTCGTGCTAGGGGAAGATT TTCTAGCCAAGGAAATGAACACCAAAGGGCGACTAATGTGTCCCCTGTTACGGTACCTCTATTGCCTCATTCTGGCAATG CTCCTGGCATTTCATACCCTTTAGGTCGTCCAAGCTCTTTTAGTAGACCAATTTCTAGCAGTGAGCAGTTGTATGGTGTT ATGCCTGTATCTCCTGCAGAATATAGCACTGCTCTAACTAGTCAGGACCGCTTTCGTCGCTACAACATAGATGGTATTGC AGAGGTATTATTGGCACTTGAGAGAATAGAACAAGATGAAGAGCTAACCCACGAGCAAATTCTCTTACTAGAGACCAACT TGTTCCTTAGTGGACTAAACTTTGATCATCATAGAGACATGCGGTTGGATATTGACAGCATGTCATATGAGGAACTCTTA TCTCTGGAAGAGAAGATGGGAACTGTAAGCACAACTCTAACAGAGGAAGCACTTTCAGCATGCCTCAAGAGAAGTATCTT TGAGCCTGGACCTACAGAAGAAGCAGCTGAGGATTATAATGAGGATAAGGATGATATCAAATGCTGCATTTGCCAGGAGG AATATATTGTTGCAGATGAAGTTGGCACTCTACAATGCGAGCATATATTTCATGTGGTTTGCATACAGGAGTGGCTGCGG CTGAAGAATTGGTGCCCTATTTGCAAAGAAGAAGCCGCACTGTCCAATTCATCTTCAACCCAGTGA
Protein sequence (LotjaGi5g1v0066400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEYSGKRGINGVVVPRKNMGLLFRDTANTRDRNGKNCSRLGCSSKVNPMKVAHIRSSEEGISLRSSMRSSSSCKEAIGC SSRTTRNPGKPSIERQKMLSFESDSSDTLLKRNSIESSNVMRMKVQSSSVASDTQSQRNFDRRPGLRQQEIKSTSPVTRA VASKYGLQNLRCNTISDIIPTGCSSSDSTFNKRKGMIKKRNCEGESSSTVRGKKMTGSSMEGLNSGPRNSICISDSRRSI NVPSHRDSITASVRAQRSISSRARGRFSSQGNEHQRATNVSPVTVPLLPHSGNAPGISYPLGRPSSFSRPISSSEQLYGV MPVSPAEYSTALTSQDRFRRYNIDGIAEVLLALERIEQDEELTHEQILLLETNLFLSGLNFDHHRDMRLDIDSMSYEELL SLEEKMGTVSTTLTEEALSACLKRSIFEPGPTEEAAEDYNEDKDDIKCCICQEEYIVADEVGTLQCEHIFHVVCIQEWLR LKNWCPICKEEAALSNSSSTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 499 | 499 | 5.6E-104 | – | |
| PANTHER | 1 | 499 | 499 | 5.6E-104 | – | |
| MobiDBLite | 57 | 94 | 38 | - | – | |
| MobiDBLite | 60 | 91 | 32 | - | – | |
| MobiDBLite | 123 | 142 | 20 | - | – | |
| MobiDBLite | 123 | 157 | 35 | - | – | |
| MobiDBLite | 187 | 278 | 92 | - | – | |
| MobiDBLite | 192 | 207 | 16 | - | – | |
| MobiDBLite | 208 | 278 | 71 | - | – | |
| Gene3D | 410 | 493 | 84 | 3.1E-16 | ||
| SUPERFAMILY | 442 | 492 | 51 | 9.9E-18 | – | |
| Pfam | 447 | 489 | 43 | 9.4E-11 | ||
| SMART | 448 | 488 | 41 | 1.5E-5 | ||
| ProSiteProfiles | 448 | 489 | 42 | 11.516 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0066400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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