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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0066900 |
| Transcript ID | LotjaGi5g1v0066900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Udp-glucose 4,6-dehydratase; TAIR: AT1G78570.1 rhamnose biosynthesis 1; Swiss-Prot: sp|Q9SYM5|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1; TrEMBL-Plants: tr|I1M9T9|I1M9T9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0066900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11127383..11130058) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCATCAAAACCAGACATGTATGAACCAAGAAATATCCTTATTACTGGAGCAGCTGGTTTCATAGCCTCCCATGTCAC TACAAGGCTAATAAACAACTACCCTACCTACAAGATTGTAGCTCTTGATAAGCTAGACTATTGCTCCACTTTCAAGAATC TTCAATCATGCAATTCATCACCAAAGTTCAAATTCATCAAGGGTGACATAGCAAGCGTTGACATTGTGAATCATATCTTG ATAGAAGAGGAAATAGACACCATTATGCATTTCGCTGCTCAAACCCATGTGGACAATTCCTTTGGGAACTCTATGGAATT CACATATAATAACATATATGGAACACATGTGCTTCTTGAGGCCTGCAGGGTCACGAATTGCGTTAAAAGGTTTATTCATG TTAGCACTGATGAAGTTTATGGTGAAACTAACTTGGAGACTGATATTGGAAATCATGAGGCATCTCAGCTTTTACCAACC AATCCTTACTCTGCAACAAAAGCTGGTGCAGAAATGTTGGTGATGGCTTATCACAGGTCTTATGGCCTTCCAATTATAAC TTCTCGCGGCAACAATGTGTACGGTCCGAACCAGTACCCAGAAAAGCTTGTTCCTAAATTCATTCTTCTCGCCATGAAAG GCCAGAAATTGCCGATCCACGGGAACGGATCCAATGTGAGGAGTTATCTTTATAGTGGAGATGTGGCGGAAGCATTTGAT GTGATACTTCACAAAGGAGTGATTGGCCAAATATACAACATTGGCACTAAGAAAGAAAGGAGCGTCTTAGATGTAGCAGA GGACATTTGCAAGCTCTTCGGATCGAACTCGAAAGAAGTTATTGAGTTTGTTCAAGACAGGCCTTTCAATGACAAGAGAT ATTTTCTGGATGATCAAAAACTGAAGAAGCTTGGTTGGGAGGAGAGAACTCCTTGGGAGGAAGGACTTAAGATGACAATT GATTGGTACAAAAAGAACCCTGATTGGTGGGGCGATGTATCCACTGCTTTAAACCCTCATCCGCGTTTTTCAGCAATCAA TCTCTCCGATGATGCTCAATGGACCTTTCAATATGGATACTCAAGATTATTGAGATCATTCACCGAAGTTGGACGCGCTA ATTCTGGGTTAAAATTCCTCATATATGGAAGGACTGGTTGGATAGGAGGGTTGCTGGGAAAGCTTTGTGATGAAGAGAGA ATTTCTTGGGAGTATGGGAGAGGAAGGTTGGAAGATAGGAAATCACTTATGGAGGACATAAAGAGAGTGATGCCAACCCA TGTGTTAAGTGCAGCTGGTGTTACTGGAAGGCCAAATGTTGATTGGTGTGAATCACATAAAGTTGAAACAATAAGGACTA ATGTGGTGGGAACTCTAACACTTGCTGATGTATGCAAGGAACATGGCTTATATATGATGAATTTTGCAACTGGTTGCATA TTTGAGTATGATAAAGAACATCCTCTTGGGTCAGGCATTGGGTTTAAGGAGGAGGACAAGCCAAATTTCTCCGGTTCATT TTATTCAAAGACCAAGGCCATGGTATTATCTCTACATTTCCATTTCATCTTATTTATCGCAGTATCATTGATCCAAATTT CTAAGATTTTTTTTACTATTTCCTATTTGACATTATGATTTTACTTCTCCCACGAACACCTTAGCCACATTTGATATCAT CTTTTGCTACTGAAGTTTCACTCAGTTGGAAGTTACTTATTAAAAAATGAGGAAAATTTCAACTCTGAAATCTATGTTAT AGTGTGAGGGTATCACAGTTATAGAATAAGAGATAGAATAAGAGGGTACGATCATGAATATATATTTATAACCATGTTGG ACTAATGGACCACATTAGTGAAAGATACACATCTTCGACCCAGAACCTTTAAGGCATTGGATGTGATACCACTTACTATA ATGTGACGGATAGTCGGGTACCTCTCACAGTTATAACATCAGAAGGAGCATGAGCTGCATTAGTGAATGACAACCCATTT TTCACCCAAAACTTAAAGTATTAGGTTTATCAGTCCATGTGAGGCTTATTTATTCATCTTTTTAATTCAATGCGGGACTT ATATACAATTTAACAATTAATTTTTAATTAAATGCGGGACTTATTTATTCATCTTTTTATTTTTTACTCACACATAAGCC TTAACAATCCATCATGCATATTTTCTAGCAATGTGAATTAATTACATTTAATAACATAGAAAAAAAATGCAGGTGGAAGA CCTTCTCAAAGATTATGATAATGTCTGCACATTGAGAGTTAGAATGCCAATATCATCAGATCTTAGCAATCCAAGAAACT TCATAACAAAGATTTCTCGTTATAGCAAGGTGGTAAACATACCTAACAGCATGACCGTGTTAGATGAGCTCTTACCCATA TCCATTGAGATGGCTAAGAGGAATTTAAAAGGGATATGGAACTTTACCAATCCAGGAGTTATAAGCCATAATGAGATACT GGAATTGTATAGGGATTACATGGACCCAAAATTTAAATGGGAGAATTTTACTTTGGAAGAGCAGGCAAAGGTAATAGTTG CTTCTAGGAGTAACAATGAAATGGATGCTTCCAAGCTCAAAAAGGAGTTCCCAAATTTGTTGTCCATCAAAGATTCCATT ATCAAATTTGTCTTTGAGCCTAACAAGAAAATATGA
CDS sequence (LotjaGi5g1v0066900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCAAAACCAGACATGTATGAACCAAGAAATATCCTTATTACTGGAGCAGCTGGTTTCATAGCCTCCCATGTCAC TACAAGGCTAATAAACAACTACCCTACCTACAAGATTGTAGCTCTTGATAAGCTAGACTATTGCTCCACTTTCAAGAATC TTCAATCATGCAATTCATCACCAAAGTTCAAATTCATCAAGGGTGACATAGCAAGCGTTGACATTGTGAATCATATCTTG ATAGAAGAGGAAATAGACACCATTATGCATTTCGCTGCTCAAACCCATGTGGACAATTCCTTTGGGAACTCTATGGAATT CACATATAATAACATATATGGAACACATGTGCTTCTTGAGGCCTGCAGGGTCACGAATTGCGTTAAAAGGTTTATTCATG TTAGCACTGATGAAGTTTATGGTGAAACTAACTTGGAGACTGATATTGGAAATCATGAGGCATCTCAGCTTTTACCAACC AATCCTTACTCTGCAACAAAAGCTGGTGCAGAAATGTTGGTGATGGCTTATCACAGGTCTTATGGCCTTCCAATTATAAC TTCTCGCGGCAACAATGTGTACGGTCCGAACCAGTACCCAGAAAAGCTTGTTCCTAAATTCATTCTTCTCGCCATGAAAG GCCAGAAATTGCCGATCCACGGGAACGGATCCAATGTGAGGAGTTATCTTTATAGTGGAGATGTGGCGGAAGCATTTGAT GTGATACTTCACAAAGGAGTGATTGGCCAAATATACAACATTGGCACTAAGAAAGAAAGGAGCGTCTTAGATGTAGCAGA GGACATTTGCAAGCTCTTCGGATCGAACTCGAAAGAAGTTATTGAGTTTGTTCAAGACAGGCCTTTCAATGACAAGAGAT ATTTTCTGGATGATCAAAAACTGAAGAAGCTTGGTTGGGAGGAGAGAACTCCTTGGGAGGAAGGACTTAAGATGACAATT GATTGGTACAAAAAGAACCCTGATTGGTGGGGCGATGTATCCACTGCTTTAAACCCTCATCCGCGTTTTTCAGCAATCAA TCTCTCCGATGATGCTCAATGGACCTTTCAATATGGATACTCAAGATTATTGAGATCATTCACCGAAGTTGGACGCGCTA ATTCTGGGTTAAAATTCCTCATATATGGAAGGACTGGTTGGATAGGAGGGTTGCTGGGAAAGCTTTGTGATGAAGAGAGA ATTTCTTGGGAGTATGGGAGAGGAAGGTTGGAAGATAGGAAATCACTTATGGAGGACATAAAGAGAGTGATGCCAACCCA TGTGTTAAGTGCAGCTGGTGTTACTGGAAGGCCAAATGTTGATTGGTGTGAATCACATAAAGTTGAAACAATAAGGACTA ATGTGGTGGGAACTCTAACACTTGCTGATGTATGCAAGGAACATGGCTTATATATGATGAATTTTGCAACTGGTTGCATA TTTGAGTATGATAAAGAACATCCTCTTGGGTCAGGCATTGGGTTTAAGGAGGAGGACAAGCCAAATTTCTCCGGTTCATT TTATTCAAAGACCAAGGCCATGGTGGAAGACCTTCTCAAAGATTATGATAATGTCTGCACATTGAGAGTTAGAATGCCAA TATCATCAGATCTTAGCAATCCAAGAAACTTCATAACAAAGATTTCTCGTTATAGCAAGGTGGTAAACATACCTAACAGC ATGACCGTGTTAGATGAGCTCTTACCCATATCCATTGAGATGGCTAAGAGGAATTTAAAAGGGATATGGAACTTTACCAA TCCAGGAGTTATAAGCCATAATGAGATACTGGAATTGTATAGGGATTACATGGACCCAAAATTTAAATGGGAGAATTTTA CTTTGGAAGAGCAGGCAAAGGTAATAGTTGCTTCTAGGAGTAACAATGAAATGGATGCTTCCAAGCTCAAAAAGGAGTTC CCAAATTTGTTGTCCATCAAAGATTCCATTATCAAATTTGTCTTTGAGCCTAACAAGAAAATATGA
Protein sequence (LotjaGi5g1v0066900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSKPDMYEPRNILITGAAGFIASHVTTRLINNYPTYKIVALDKLDYCSTFKNLQSCNSSPKFKFIKGDIASVDIVNHIL IEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTNCVKRFIHVSTDEVYGETNLETDIGNHEASQLLPT NPYSATKAGAEMLVMAYHRSYGLPIITSRGNNVYGPNQYPEKLVPKFILLAMKGQKLPIHGNGSNVRSYLYSGDVAEAFD VILHKGVIGQIYNIGTKKERSVLDVAEDICKLFGSNSKEVIEFVQDRPFNDKRYFLDDQKLKKLGWEERTPWEEGLKMTI DWYKKNPDWWGDVSTALNPHPRFSAINLSDDAQWTFQYGYSRLLRSFTEVGRANSGLKFLIYGRTGWIGGLLGKLCDEER ISWEYGRGRLEDRKSLMEDIKRVMPTHVLSAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKEHGLYMMNFATGCI FEYDKEHPLGSGIGFKEEDKPNFSGSFYSKTKAMVEDLLKDYDNVCTLRVRMPISSDLSNPRNFITKISRYSKVVNIPNS MTVLDELLPISIEMAKRNLKGIWNFTNPGVISHNEILELYRDYMDPKFKWENFTLEEQAKVIVASRSNNEMDASKLKKEF PNLLSIKDSIIKFVFEPNKKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 653 | 653 | 0.0 | – | |
| PANTHER | 1 | 653 | 653 | 0.0 | – | |
| SUPERFAMILY | 6 | 334 | 329 | 1.9E-88 | ||
| CDD | 11 | 328 | 318 | 1.41044E-165 | ||
| Gene3D | 12 | 318 | 307 | 1.1E-115 | – | |
| Pfam | 14 | 319 | 306 | 1.8E-67 | ||
| Gene3D | 205 | 326 | 122 | 1.1E-115 | – | |
| Gene3D | 367 | 661 | 295 | 4.7E-78 | – | |
| SUPERFAMILY | 374 | 651 | 278 | 3.86E-30 | ||
| CDD | 378 | 650 | 273 | 1.41251E-51 | – | |
| Pfam | 407 | 544 | 138 | 1.5E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | DTDP-glucose 4,6-dehydratase activity | Catalysis of the reaction: dTDP-glucose = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H(2)O. | ||
| Biological process | Nucleotide-sugar metabolic process | The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. | ||
| Molecular function | Coenzyme binding | Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. |
Expression pattern of LotjaGi5g1v0066900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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