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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0070900 |
| Transcript ID | LotjaGi5g1v0070900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT3G55140.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4; TrEMBL-Plants: tr|A0A151RCX5|A0A151RCX5_CAJCA Pectate lyase; Found in the gene: LotjaGi5g1v0070900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11679420..11682353) extracted from Lotus japonicus Gifu genome v1.2.
GTCGGTTTACAGTAACAGAGGACAAAGAGATTCGTTACCAAACATTCAAGACTGTTGTCACTTTTCAGTTCAGTTTTTCG TTGCAATCCAACAGAACTGAAATGAATTAAGCTAACAGCTCCAATCGAAACGTGTTGGTAGTTACGTTTGCAACCATTAA TGGGTAACACCCACCGCAAACACCGTGCTAATTCCGCCCCACACAACACCGTTCCTCCGCCTTATAAATATGGCACAACT CACTCACCGATCATCCCAACCCAAAACCAACCTTCTACTTCCAATTCCAACAACAACAGCAACATGCTCTCTTTGCCTTA CGCCCACGTCGACTCCACTCTCCGCGCCCTCGCCGCCAACGCCGAGGGATTCGGCCGCTGCGCCGTTGGTGGACTTCACG GTGCTCTTTATCATGTCACCTCTCTTGCAGGTCCTATTCATTGCATTCTTATTCTTATTATTTTAATTTCAGATCAAAAT GTAATAACTAGCAATATATTTAACTGTATTTGACCTGAAATTATAGAGCTTACTTTGAATTTAGAGAAATATTTAAATTG TCATCTTGTGTTCAAATTAAAGCACTTAATTTCATAACATGCTTATTTATGTTTCATGGTTTATTGAAAATCCTTCTACA ATTGATTCTAAAGTCAAAATTAGTTACGGAAAGAAGCTTATGTGAGTAGCTTTTAGGGGTCGGAATTGATTCTGAGAAAA TAGAAGCTGATTCAAACATGCTATGTCGAGCTGAAGGAAAAAATGAACTTTAGTGTCTAACTGTATGAGTTATTTTAATC CATGTACCATTGTTTATGCTCACTTGGTTGTCATTTTGAGAGACAGATATATTTGTAGAAGTTGACAGATTAGGTGTGTA ACATGGCGTTCATTGGTTGGATTCTTTTGAATGCGTGCAGATGATGGACCTGGATCACTACGTGACGGTTGTCGGAGAAA AGAACCTTTGTGGATTGTGTTTGAGGTTTCTGGCACTATTAATCTTTCGTCGTACTTGAGCGTGTCGTCGTACAAGACCA TTGATGGGAGGGGCAAGAGGATTAAGCTCACGGGAAAAGGTTTGAGGCTGAAGGACTGCCAGCATGTGATCATTTGCAAT TTGGAGTTAGAAGGAGGAAGAGGGTCTGATGTTGATGGCATTCAGATAAAGCCTAATTCACAGCACATATGGATAGACCG TTGCAGTCTCAGTGATTTTGATGATGGGCTCATAGATATTACAAGAGAAAGCACAGATATAACTATTTCAAGGTGAGAGG GCCATGAATTGTTTGTGATCGACCCTTTTATAATTATGTGTTCTAGCATATATGCAAATGTTTTGTGTAATTTAAAGCAT GTAGCTTCTGTGCATAGAATTGAATATGATTGAAGAGAAACTGATTTAAACACGCAATTCATCATTTTCAGGTGTCATTT CTCGCGGCATGACAAAACAATACTCATAGGGGCAGATCCCTCTCATGTTGGTGACAGATGCATGAGGGTCACCATTCACC ATTGTTTCTTTAATGGGACTCGACAGAGACACCCTCGTGTTAGATATGCTAAAGTACATCTGTACAATAATTACACCAGA GACTGGGGCATATATGCTGTTTGTGCCAGTGTGGAATCCCAGGTGAGTTATTATGTGTTTATTGATTGGAATTGCTATAA GTAATTTCAAAACAATCTTTCTGAATGATGTGCAAAATTACTAATTGGCATTTTACATTGATTCCAGATATTCTCTCAAC ATAATATCTATGAGGCAGGCCACAAGAAGGTGGCATTTAAGTATCTTCATGAGAAGGTTTGTCTAGTTCTCTTGTTTAGT AGCCTAGTAATCATTTAGCTTGAATTGGAACTTATGTTATCAATCTTTTAGATGCTCATTTCCAAGGATCTTGTGAAAAT GGTGAGGAAGCTTTGTTTTGACTCGCTTATTATGCTGATATATTATCTTCGATTTGCAATCGGTGTGTAGGACAACAATT ACATCTAAGGAACTAATGGAAGTATTAATTTTGTTATCCTTCTAAGGAATAGAAAATACTTGTGCTGATTCCCTAACTAA AATACTACAAGAAAATAGTATCGAAGAGTTTGATTACTCTGATGAAATGCTAAACCACTTCTGCTACTTTTATGTTAAAA CAAAGAGTTTGATTACTTACTTCTGCTGCCCTTTTTATTAAGCTGACAAGACTGAATTGGTGACATCCCTGCAGGCAGCA GATAAGGAAGCAGAAGCAACTGGTTATATAAGGTCTGAAGGAGACTTGTTTCTAAATGGTGCTCAACCAGGGTTACTAAC TCAGAATGTTGAGTGTAACATGTTTCACCCCAGTGAATACTATCCCACATGGACAGTGGAACCTCCAAAAGATGATCTAA AACAGGTTCTTCATCACTACACTGGATGGCAATCCGTTGCGAGACCAGCAGATCAAACAGTTTGCGCAGACTAGAAGCTA AGCTGTTGTCCAAATCAGTATTATCTGATTTTCACCGACCCCTGGGGTTCTTCTGGGCATATTAAATTACTTTATATGTG TATATAATGATTGCGTGAACTAATAATGCTTATGTTGCATCCAGTTTAGCAAGTTACTTAATGTGCACTCAATGTAACCC TGCATTCAGTGTGGTCTCCCTCGAGACCAGAAAGTTACCAACATCAACAACAACAACAACAATAATAATAGTAACAATAG CATTTGTGGGGCTGAGGTATTCCCCAGTTAGTTATTTCTTTGTTGTTGATTTCATGATTTGTACCTGTTTTCTCTACTTA TTGTCTTATACAATGACTCTTATAATATTAATAAAGTCAAATAACTATAATACAGATCACTATCTTTTAAAACTTAGTTC AGACTGACCGGTCGAACTAGTTCTATCAGGACTTTGTCACCTGACTGGTTTGAG
CDS sequence (LotjaGi5g1v0070900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAACACCCACCGCAAACACCGTGCTAATTCCGCCCCACACAACACCGTTCCTCCGCCTTATAAATATGGCACAAC TCACTCACCGATCATCCCAACCCAAAACCAACCTTCTACTTCCAATTCCAACAACAACAGCAACATGCTCTCTTTGCCTT ACGCCCACGTCGACTCCACTCTCCGCGCCCTCGCCGCCAACGCCGAGGGATTCGGCCGCTGCGCCGTTGGTGGACTTCAC GGTGCTCTTTATCATGTCACCTCTCTTGCAGATGATGGACCTGGATCACTACGTGACGGTTGTCGGAGAAAAGAACCTTT GTGGATTGTGTTTGAGGTTTCTGGCACTATTAATCTTTCGTCGTACTTGAGCGTGTCGTCGTACAAGACCATTGATGGGA GGGGCAAGAGGATTAAGCTCACGGGAAAAGGTTTGAGGCTGAAGGACTGCCAGCATGTGATCATTTGCAATTTGGAGTTA GAAGGAGGAAGAGGGTCTGATGTTGATGGCATTCAGATAAAGCCTAATTCACAGCACATATGGATAGACCGTTGCAGTCT CAGTGATTTTGATGATGGGCTCATAGATATTACAAGAGAAAGCACAGATATAACTATTTCAAGGTGTCATTTCTCGCGGC ATGACAAAACAATACTCATAGGGGCAGATCCCTCTCATGTTGGTGACAGATGCATGAGGGTCACCATTCACCATTGTTTC TTTAATGGGACTCGACAGAGACACCCTCGTGTTAGATATGCTAAAGTACATCTGTACAATAATTACACCAGAGACTGGGG CATATATGCTGTTTGTGCCAGTGTGGAATCCCAGATATTCTCTCAACATAATATCTATGAGGCAGGCCACAAGAAGGTGG CATTTAAGTATCTTCATGAGAAGGCAGCAGATAAGGAAGCAGAAGCAACTGGTTATATAAGGTCTGAAGGAGACTTGTTT CTAAATGGTGCTCAACCAGGGTTACTAACTCAGAATGTTGAGTGTAACATGTTTCACCCCAGTGAATACTATCCCACATG GACAGTGGAACCTCCAAAAGATGATCTAAAACAGGTTCTTCATCACTACACTGGATGGCAATCCGTTGCGAGACCAGCAG ATCAAACAGTTTGCGCAGACTAG
Protein sequence (LotjaGi5g1v0070900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNTHRKHRANSAPHNTVPPPYKYGTTHSPIIPTQNQPSTSNSNNNSNMLSLPYAHVDSTLRALAANAEGFGRCAVGGLH GALYHVTSLADDGPGSLRDGCRRKEPLWIVFEVSGTINLSSYLSVSSYKTIDGRGKRIKLTGKGLRLKDCQHVIICNLEL EGGRGSDVDGIQIKPNSQHIWIDRCSLSDFDDGLIDITRESTDITISRCHFSRHDKTILIGADPSHVGDRCMRVTIHHCF FNGTRQRHPRVRYAKVHLYNNYTRDWGIYAVCASVESQIFSQHNIYEAGHKKVAFKYLHEKAADKEAEATGYIRSEGDLF LNGAQPGLLTQNVECNMFHPSEYYPTWTVEPPKDDLKQVLHHYTGWQSVARPADQTVCAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 47 | 47 | - | – | |
| MobiDBLite | 28 | 47 | 20 | - | – | |
| PANTHER | 33 | 372 | 340 | 2.0E-202 | – | |
| PANTHER | 33 | 372 | 340 | 2.0E-202 | – | |
| Gene3D | 54 | 350 | 297 | 1.1E-90 | ||
| PRINTS | 67 | 84 | 18 | 1.6E-11 | ||
| SUPERFAMILY | 67 | 374 | 308 | 2.04E-82 | ||
| SMART | 114 | 292 | 179 | 7.2E-34 | ||
| PRINTS | 122 | 138 | 17 | 1.6E-11 | ||
| Pfam | 123 | 285 | 163 | 3.0E-25 | ||
| PRINTS | 269 | 288 | 20 | 1.6E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0070900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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