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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0072000 |
| Transcript ID | LotjaGi5g1v0072000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein, putative; TAIR: AT5G02750.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8GXF8|SHGR9_ARATH E3 ubiquitin-protein ligase SGR9, amyloplastic; TrEMBL-Plants: tr|A0A1J7FRA0|A0A1J7FRA0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0072000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11865655..11868162) extracted from Lotus japonicus Gifu genome v1.2.
ATAGAGATAAAAAGAAAAAAAGTATGTCCCAATTATGGTTATCGATAGCGCGCTATATCGCTGTGTCGTAGCGTAGCAGA CCCCTTCCGCGACGGGATTGTGGCTGTGAAATCCCGCTATTCGCTGTCAATAGTAGCCTTCCCTTGTATGGTATTTCATT TTTGGGGGTCATCCGCGACAGGTTGCGATTCACGATCGACTACTACGTTGATGAATTATTGTAGAAAAAAAAAACAAGAG TGAAGGACATATTGGTCAACACTAGAAAGAACTAGTAGTGTACTATTATTCTAGTAAATAGTACTCCCTCCGGTCCTATT TATAAGCATGAAAGAGAAGAAAAATCTTGGTCCTTTTTATAAGAACCAAATGAAAGTTTGAGCTATATTAATTTTTTTTT CCAATGATGCCCTTATTAATTCTAACTTGTAAAATGTGCCTCATTAATTATTCTCTCTCTTTCCCACTTTCCAATACTAA TAACAAAGGGTAATTTTGGAAGTTTATTTTGATTCAAGACAAATTTAATGCATTTTATCTAGTTTAACTACATTTCTTAA ACTATGTGAATTTTTTTTTTGCTGCTTATAAATAGGACCGGAGGGAGTAATGAGTAACACACATGTTACATAAAAAGCCA CGTTCATCATGAAACTTACTTACATATATAGTTTAGTTCCCCCCTACAAAGCTAAAGGTACAAGCACATGATCCCACAAT GGAAGAAACCACATCAACAATCATGGCTGCACTCTCCACCCTCACTCCTTCCCAGCTCACAGATCTCACCAACTCAATCC TCTCATCCACCCGCCGCCACCACCTCCGCCTCACCTTCCTCCTCTCCTCCCCAACTCTCTTCTCTCTCACCCTTCATCAC CTTCACACTCTCTCCCTCTCCCAAAAGACCCTCCTCATTGCCCGCCACCTCCTCTCTTCCCTCCACCACCTCACCCGCCA CCTCCAACCCGCCTCCCCGCCACTGTCCACCGCCATAAGAGAGCGCGAGCTGGACGCCGTCTTACTCCTCCTCCTCTTCT GCGAGACCCACAACCACAATCCAGAAGCCCTCGAAGCACCCTTCTCCGATTGGAGATTGAACCTGAGCAAGCTCTTCTCC GACACGTTGCTTACACTTTCTTCTTCTTATTCCTCTGCACCTGTCATTGGGGCGTGTAAGGGTACAATCTTGATCCCCTT CGTTGAGAGGGTGAGCCGGTGCTGGAGGCTAGTCGGCGCGATGAATTGCGGCGGTGGCGGAGGAGGAGGGAAGGAGTTTG GGGAGGTTGCGGCTTCGGCTGCGGCAGTGGTGGCTCTGCCGGCGGTGGAGGTGGCGGTGGGTGGGAGAGAGTGTGTGATA TGCAAAGAGGAGATGCGAGTAGGGAGAGATGTGTGTGAGTTGCCATGTCAGCATTTGTTTCATTGGATGTGCATTTTGCC TTGGCTAGGGAAGAGGAACACGTGTCCTTGCTGCAGGTTCCGGCTACCGTCCGATGATGTGTTCGGGGAGATCCAACGGC TGTGGGAGGTGTTGGTTAAATCAGGTGCAAAAGAATAGGATGATTCCTTAACCTTGGTTAAAATGATTGTACCATCATTC TTATTTCTTACTTGGCATGGTAATTGAAGAAAGGTACAAAGGAATAGAAAATAATCAAAATATAGTGATCCGGAAACCCT TTCTGAATTTAAAATCAATTATGAAGAGGAGCTTCTGTAAGCTTTTAAGTTTTAGAATTGATTATGCTGAAGAGAAGTTA ATTCACACCTCATGCTGATATAGGGAAGAAAGGGAGGTGGGGCCCACGGTCAAGCTTTTGTAGCAATTTTGTTGTGTGAA TGGCTGGCATGTGTCTGTTTGGTTTTGATGTTTTTGATCTCAGACAGGGACTCATGTGGTGGAGGAGGAGGGTATGATTG TGTGGCCAAGTGAATTTAAGGATAATTTAGCATACAAGTGAGGTTGTTAATTTAATAATCTTGTGTGTGTATAGTTTAAG ACTATAGGATATAGATATGGAAAGATAGAGAATCAATAAATTGCAAGGGTTCTTGGTTATATTAGTTTTTAGTTTCATAA TGTGTTCTTCATTGTTGGCAGTTGATTTGTATTAATTGCTAATTTGCTGTTAGCCCCATGATTCATTATGTCAATGATTT GGTGTACCCAAGAAGTGTACAACAAATAAATATGGTGCCTGCTGTGGTGCCTCCTTCCAGATGAGGGTATGGTGCCTCTG CCTGTTTAGACCAGTAGGAATGTGCCATGTATTAAATGAGGTTTTTTGTTTTTTGTTTTGAAATGATTTTAAATTAGGGG AAAATATTTTCGAAAAATACGGTTTAAAATAAAATAAAGTTATTTATATTGCTATCTGATCCCTCACTAATTCAGTTACC ATAGTAAAAGTAACTTTTTTTAACATTTCTAAATTGAAGTAACATGACTATTCATTTTCCCTCTCTTTTGAAAACTAAAA CATTACATTCATTGTTCATCATTCTCCA
CDS sequence (LotjaGi5g1v0072000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAACCACATCAACAATCATGGCTGCACTCTCCACCCTCACTCCTTCCCAGCTCACAGATCTCACCAACTCAAT CCTCTCATCCACCCGCCGCCACCACCTCCGCCTCACCTTCCTCCTCTCCTCCCCAACTCTCTTCTCTCTCACCCTTCATC ACCTTCACACTCTCTCCCTCTCCCAAAAGACCCTCCTCATTGCCCGCCACCTCCTCTCTTCCCTCCACCACCTCACCCGC CACCTCCAACCCGCCTCCCCGCCACTGTCCACCGCCATAAGAGAGCGCGAGCTGGACGCCGTCTTACTCCTCCTCCTCTT CTGCGAGACCCACAACCACAATCCAGAAGCCCTCGAAGCACCCTTCTCCGATTGGAGATTGAACCTGAGCAAGCTCTTCT CCGACACGTTGCTTACACTTTCTTCTTCTTATTCCTCTGCACCTGTCATTGGGGCGTGTAAGGGTACAATCTTGATCCCC TTCGTTGAGAGGGTGAGCCGGTGCTGGAGGCTAGTCGGCGCGATGAATTGCGGCGGTGGCGGAGGAGGAGGGAAGGAGTT TGGGGAGGTTGCGGCTTCGGCTGCGGCAGTGGTGGCTCTGCCGGCGGTGGAGGTGGCGGTGGGTGGGAGAGAGTGTGTGA TATGCAAAGAGGAGATGCGAGTAGGGAGAGATGTGTGTGAGTTGCCATGTCAGCATTTGTTTCATTGGATGTGCATTTTG CCTTGGCTAGGGAAGAGGAACACGTGTCCTTGCTGCAGGTTCCGGCTACCGTCCGATGATGTGTTCGGGGAGATCCAACG GCTGTGGGAGGTGTTGGTTAAATCAGGTGCAAAAGAATAG
Protein sequence (LotjaGi5g1v0072000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEETTSTIMAALSTLTPSQLTDLTNSILSSTRRHHLRLTFLLSSPTLFSLTLHHLHTLSLSQKTLLIARHLLSSLHHLTR HLQPASPPLSTAIRERELDAVLLLLLFCETHNHNPEALEAPFSDWRLNLSKLFSDTLLTLSSSYSSAPVIGACKGTILIP FVERVSRCWRLVGAMNCGGGGGGGKEFGEVAASAAAVVALPAVEVAVGGRECVICKEEMRVGRDVCELPCQHLFHWMCIL PWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKSGAKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 278 | 277 | 9.5E-97 | – | |
| PANTHER | 2 | 278 | 277 | 9.5E-97 | – | |
| Gene3D | 204 | 264 | 61 | 6.1E-17 | ||
| SUPERFAMILY | 208 | 258 | 51 | 1.08E-18 | – | |
| Pfam | 211 | 253 | 43 | 2.9E-11 | ||
| ProSiteProfiles | 212 | 253 | 42 | 11.87 | ||
| SMART | 212 | 252 | 41 | 1.1E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0072000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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