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LotjaGi5g1v0073100.2

Overview

Field Value
Gene ID LotjaGi5g1v0073100
Transcript ID LotjaGi5g1v0073100.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT3G09600.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8RWU3|RVE8_ARATH Protein REVEILLE 8; TrEMBL-Plants: tr|I1L8Q8|I1L8Q8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:12128361..12134186) extracted from Lotus japonicus Gifu genome v1.2.

CCCAGCAAAAACTTTGGCTAGATGCGCAGTGTGAGCGTGTGGTGTGTGAAATAAGAGGAGGATATTCTGTGGTCATCATA GAATAGGACCGTACATGAAAGTTGCAACTTGTGTTCCACAGATCACAACCACAGAACATGTTTTCACCCAACTCGCCACA TCATTTTCCTTTCTTTGTATCTGTATCCTCTCTGCTGGATGCAGAGTCAGTAGTCTGTGATCATGAATTCCAACAACACT TCGAATTCTTCTTCTTCTCAGTCAATGGCAGCAGCAGCAGCAGATGGCTCTTCTTCTTCTGGCAAGAAGATCAGAAAGCC TTACACCATTACCAAGTCCAGGGAAAGCTGGACTGATGAAGAACATGACAAGTTTCTTGAAGCTCTTCAACTGTTAGTAG TACTCACTCTTCACTTTTTCTATTTGATTCTCAAACCAAGAAGCTAGAGTTAATTTTTGCTCAAGAAGGAGGGATAGAGG ATGATCATGTTGTCTGAAAAAAAAAAATGCATAATTGAGTTGAGTAGGGGAAAAAATAAGCTGATCCAAACATGCTATGA AGTGTGGTTGTGTTTTATTTTCTATCTTCCCAACTTTATTTACCATAATAGATATTGCTCAGCCCTACACAATTGAGCTG AGTAGGTGGAAAATGACAGGGTAGAAAATTTGGAATGAAATTGAGCAATTTTATACTTGTTTTGCATAACAGATAGTCAG ATATTGGGGGAGGTAGAAGTTGAACTCTTTTTTACCTCATGTTTAGAAATTCTTCTACAATTGATTCTAAACTCAAATTC AATTCTGGAGTGAAGCTTGTGAGTAGCTTATAGGTGTTAGAATTGATTCTGAGATAAAATAAGCTTATATGAATATGCTA TGAGTGCAGTGTTTTAAATCGCGGATCGTGGACTATAGCGGTAAGCCAAAAATCCGCTATTTCCAGCCTCTTAAAGCGGA AAAAGCGGGAAATAGCGGGTAAGCCAAAAAAAGCGGTACACTATAGCGCTATAGCGCCGCTATTACCGCTATTTGAAAAC ACTGATTATTAGTATGTTTGTGATTTATTTTCCATCTTCTCAACTTCATTTTCCATAACAGATACTGTTCAGCCCTAATT TTTTGAACTGCCTTTGATGTAGCCAATGTGCTTTAAATTATGCCAAATACACTGCAACCGAACTGCTGACATTTGTGAAT TATTCAGGTTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACGGTTATTCAGGTTAGGAGACTTTTC TTTTCTGCTCTGTTGTAATTGGTAACTTTTTGCACTCGCTTAGAATAGAATGGAACAATCTATTCTTTTCATTTTGGATC CACTTCACTTCCTCTTTTCTAGTGGATCCATAATATACCACTTTTTTTTTTGATAGTTTTTTTTATCTTATGTCTTGTTT AACATGTTTTTAATATATACCAAATACAGAACAAAACTCACTATGTTCTTTCTCATTCTAATCTGTCTACCTAATGCTAT CTGTATTTATATTTTCTTTTTTCATGTCTGTATTCTATTTGGGGATTATTTTTCACTAACTAATAACTATTTCAGATTCG AAGCCATGCCCAAAAATACTTCTTGAAGGTTCAAAAAAATGGGACAGTAGCTCATGTGCCTCCTCCGCGTCCTAAGCGCA AAGCAGCTCATCCTTACCCACAAAAGGCATCCAAAAATGGTCTGCTTCTATTTGAGATGGTGATATTCTGTCCTTCAAAA CCCGAGATTTCATGCATCCCTAACATACTTCATTCTGGGTTGCCAGTTTTGATGCCGCTTATACCAGCATCCATTGCTTA TGCTTCTTCCGCAAATACCCTTCCACCTGGATATGCCACATGGGATGAAACTTCTATACTCATGAATGCTGGATCCAATA AATCCATGACCTATCAGGATGAGCTCAACAAAGGTTACTGGCATGCATAGTTCTTTTTATTATTGTTATTTTGATGTCAA TAGTCTTAATTGGCTATAAAGCCTATACTTAATGGAACTGTCCACCACTTATTATGTTATATGACGTTACTGATTCAGCT GATATTGGATCAAAGGGGATAATACAAATTAGCAACAGCAGTCTTAGTGGTGTTGGAAACTCTACTAGAAGGACACCGTC GTCTGAGATACCAAAGCAAGGGAAGCAACCTCTGGTGCTTCATGGTAATTTCCTTTCATATTTTTTTTTTCTAATATATT GATTTTCTTTTGTCATTTTTGGATTGGATTCAGTGAATGATGGTTTATCTGTCATCTTGACCATATTTCGCAGGTTTGCC AGACTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTTTTTGATCCAGATACAAACGGTCATGTCCAGAAGTTGCAGGAAA TGGATCCTATAAATTTTGAAACTGTGAGTTGAATACTTGAATGAAACTTGTAATCATTTAGTCAGATAACATAAAGCCTT CTCTCCTTTGACCGAAGTAACTGCAGAGGTGAAACGTAGCTCTATAGTCTGATAGGTATTAATTCACTTAAAAAAAAATT AGCATTAAGATTTATGAGACTCAACAAAACTTACAGGATGCATGGTAAATTTATAATGAACAATTTTTCCTCCTTCCGGA GCAGAATTTGGAAGTTTGATTAGGCCATTTTGAGCCATACAATCTTGTAGCTGGTAGCATAAAATGTAGTCTTCCTATTT GAACCAGGAAGGTTACTGGCATCAGGTTTCACTTATAAGTTATAAGAGGATCCTTTTTTATTGTAATAGCTTAAAATTGA AACATTAGGCTGTTAGGGGCCAACCCTGAGCATTTGGTACTTGCAAAGTTTACAACCCCATAGGAATACAAGTTAAGTAA GTGGATTAGTTTATTATCAGTTGGGCAGTTGAATCAGAGGCCACTGTATAATTGCATTCATTCTGAAGAGTGAATAACAG ACTACATTCAGTTGTAAGGGGAAACTCTTGGGGGATTCTGCCCCTATTCTTCAGTAGATGAGGGTGATGATATGGCTGTA CAATAATGGGGTATGTCTACTTTCCTTCAGAGGGAGCTTATGGTCATTGCCACGAACTGGAAGAAGTCCTTCCAGACATA AAACTTCCGAAAACTGATCCAATTATTGCTGTAACTGAGACTACTGCAAGGTGGTGAGGGCCTGATCTTCCACCTCCATA TCAGTCCCCTTATTCTCCACAACAGAAAGCTGACAATCTGATGATAACAGTAGCACAGAAGCATACTCCACCTTTGATAC CTTCAATGGAGTCTTAGGGGAAACCATGGCCGTGAATAGGCTAGGGTCCTCCTTAATGCTGACATCCTGACCATAATGAG TAAAGTGTATGGTCAAAGTTCTCTATTTAGTGTAGCCATATCCTTAAGCTCATAACCAAACCATGCAAAAAACGATATCC ATGGATCCACCCCTCCAAGTTTGAACAGAAGAAAATCAACAGTATACTTGTGATCTGCCAAGGATAAGTGTGATCACAGG TATCTGGTCGTTTTTGTGATGGGCTAAAAGGAAGGTCATATTGGAAACTGTTTCCTTCTTCCTTTGCTAGATACTCATGA TAAGGAAGATGTTTTACATCCCTGTGTTAATGTTACCACCATGAGTGCTTCTCAGTCCTTCTAGAGATTTGTTTGAATCC ATGTATGACTGCCTTGATGTTTGGCTTGTTACCTCACAGTGAGATTTGCACGTCCTTGATGAATTGCCGACCCGGCAACT GAATATGCGACTCAGCAAACCCTGAGTGACTCGCAATTCTTCTTCAACATCCCTGGCTAGAATAACTTGATAGTTTCAGT GATATTCTACGCAAAGCTCTGCTTAAAGTTTGTTAAATTATATATTTACGCCAACGGATGATTGCTATATATGTAACTGG AAAAGCTGTGAGACCAAACTGACACTAAATGAGCTTTGAAACAACATTGCCAGCATGATGATCTTTACATACTCGAGCTT GATATTGCTGTTTTATAGTACATGAATTTCTTATACATCCCTGGAATGGTGTGCCTATATGAATGAACGTACGAGATACT TAGTATTTTCAAGGTCAAAACTTAAAAAACAGCTTACCACCTCCCTTCTTCATAAAGGGAGTAGTTCCTATTTCTTCACC CTTCTGGACGCACTATGAATATAAATATTTTTTATCTATCAATTCTCAGTTTATTGACTAGTATATATGTAATGTTCTTC TGCAGGTTTTGTTGTTAATGAGAAATCTCACTGTTAATTTGTCTAGTCCTGACTTTGAGCCCATTGTAAGTCACAATATC AATCTCAATTATGATTATATAATCTTGCGAGTATTTTCCTAGAAACAGTTTTATTTTCACATAATTGCAATTGTATTCTT TCCAAGTTTGAATTTACTGATGTGCATTGTTTTGTATTCTAATGAATCATAATTAGTCGCCATGGTCCATCAAGGTCATA TGCCAAATCCAGGATATACAATCTGATCTCCTTGATGTTTTATATTTCTGAGAAAATTAAACAGTAGCATTTTACAATCA TTTGTTTAATCCTAATCTCTCTAGCTTCTGCACAACTTTTTGCCATTATCGTTACATGACTTTTTTAGCACGTCAAAATA TTGACTCCCTTGATTATCAGAGTAAAAATAAGGAATGAAAACCTAATATTATTCATCTGACACTGAATAAAATCATATTT TACACCCAAACTTTGTGATGTATCTCCAAATAAGAAATTTGACTAGCTGAACTTTATTGTTACCTTCAGAAAGAGGTAAT GTCAACATATGATGTCAATACCGTAGGAGTTACTGAAGTCAAGAAGCAGACAACTGATGTGTCATGTCAAAGTGCTTAAT CACAAGCAATTTCTTAATATGGTATTGCTTTTTCTTCTCATTCTTTTGCTTTTTTTTCCCCAACTTTTTCCCCATTTCTT TAGTTTATTGTAACATCTACTTCTACAGTTAGCCAAGTGAAGCTTGGATGGAAGTCTGAGATTTTGCTTAGCCAGCAATC AGGCATGGGAGTGTCTTGCACTCGTTGTAAAGCCTGTAAATGTAACCTTAATCTTTTGTAATCATTGCCAGGGTAGTATA TGTTAGAAAGCTGATTTTATGGTTTCATAGCTCGTTCAGTGAATGTTTGGAACCATGGTGAAACCAAAATCATGGTGGAC AGTCTCAAAAGCCAAGAGAAGTTACTTCTGTCTACCGTGATTTTCCAGACATGCACTTAGAGTGAGTGTTTGGATTTATG CTTTGCACTGAATCCAAAGTGGGTTCTCTTAAAAGCTATGACTTGTAGCTTAAGACTACAAGTGATTCTCAGGCATTTCA CCGTGCAAACCAAGAGATAATATGCCTTCAACTAGACATATATGTTCATAAAACATAAAAAGAAAAGGGGAGGGGAGGGG AAGAAAACTATTGTCTATTATCTATGGGGGTTTTCGTTTCTTAATCTATGTAAAGTCGCACTTTGACACACGTACTTGAA TGGCTCTCTTTAGATTAGTAGGAACATTTTAAATGTAAAAGCAACTCAATTTCTAAATAATATTTTCTTGCAGAATCAAG TAGAATTTTCCTCATTTTATTTTCCTGGGATTAACAGTATCAATTTGAATGTAAGTAATATCAAATCAAGAAGCCATTCC AGTGATTTACCAAATCAAGAACCAAATTGTATTGATTTATATATCAGTTTGTTAGTTCATGCCACACGAGTATGTCTTGT AGGCAAAAGTTTTTAATTTACATTAAAAATTGAAAAAATGTTATTATTAAATTAAAATTATTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0073100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATTCCAACAACACTTCGAATTCTTCTTCTTCTCAGTCAATGGCAGCAGCAGCAGCAGATGGCTCTTCTTCTTCTGG CAAGAAGATCAGAAAGCCTTACACCATTACCAAGTCCAGGGAAAGCTGGACTGATGAAGAACATGACAAGTTTCTTGAAG CTCTTCAACTGTTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACGGTTATTCAGATTCGAAGCCAT GCCCAAAAATACTTCTTGAAGGTTCAAAAAAATGGGACAGTAGCTCATGTGCCTCCTCCGCGTCCTAAGCGCAAAGCAGC TCATCCTTACCCACAAAAGGCATCCAAAAATGTTTTGATGCCGCTTATACCAGCATCCATTGCTTATGCTTCTTCCGCAA ATACCCTTCCACCTGGATATGCCACATGGGATGAAACTTCTATACTCATGAATGCTGGATCCAATAAATCCATGACCTAT CAGGATGAGCTCAACAAAGCTGATATTGGATCAAAGGGGATAATACAAATTAGCAACAGCAGTCTTAGTGGTGTTGGAAA CTCTACTAGAAGGACACCGTCGTCTGAGATACCAAAGCAAGGGAAGCAACCTCTGGTGCTTCATGGTTTGCCAGACTTTG CTGAAGTTTACAGTTTCATTGGAAGTGTTTTTGATCCAGATACAAACGGTCATGTCCAGAAGTTGCAGGAAATGGATCCT ATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAATCTCACTGTTAATTTGTCTAGTCCTGACTTTGAGCCCATTAAAGA GGTAATGTCAACATATGATGTCAATACCGTAGGAGTTACTGAAGTCAAGAAGCAGACAACTGATGTGTCATGTCAAAGTG CTTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0073100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNSNNTSNSSSSQSMAAAAADGSSSSGKKIRKPYTITKSRESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSH AQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLMPLIPASIAYASSANTLPPGYATWDETSILMNAGSNKSMTY QDELNKADIGSKGIIQISNSSLSGVGNSTRRTPSSEIPKQGKQPLVLHGLPDFAEVYSFIGSVFDPDTNGHVQKLQEMDP INFETVLLLMRNLTVNLSSPDFEPIKEVMSTYDVNTVGVTEVKKQTTDVSCQSA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 45 45 - –
MobiDBLite
mobidb-lite
1 21 21 - –
PANTHER
PTHR12802:SF115
6 278 273 4.3E-128 –
PANTHER
PTHR12802
6 278 273 4.3E-128 –
SUPERFAMILY
SSF46689
34 90 57 1.27E-17
IPR009057
ProSiteProfiles
PS51294
35 89 55 15.897
IPR017930
TIGRFAM
TIGR01557
38 87 50 1.5E-18
IPR006447
SMART
SM00717
39 87 49 2.6E-11
IPR001005
Pfam
PF00249
40 84 45 1.7E-11
IPR001005
CDD
cd00167
42 85 44 2.71945E-9
IPR001005
Gene3D
G3DSA:1.10.10.60
43 90 48 4.2E-17 –
MobiDBLite
mobidb-lite
181 199 19 - –
MobiDBLite
mobidb-lite
181 201 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0073100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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