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LotjaGi5g1v0073200.2

Overview

Field Value
Gene ID LotjaGi5g1v0073200
Transcript ID LotjaGi5g1v0073200.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 60S ribosomal protein L4; TAIR: AT3G09630.1 Ribosomal protein L4/L1 family; Swiss-Prot: sp|Q9SF40|RL4A_ARATH 60S ribosomal protein L4-1; TrEMBL-Plants: tr|A0A0S3SSP9|A0A0S3SSP9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:12135564..12140055) extracted from Lotus japonicus Gifu genome v1.2.

ATAAAGCCCATTATGAAATACAAACACTGAGCCCAGCCTAAACCCTAAAAAACCCACTATATATTCCTCACATTCACTAG AAATGGTCCTATCAGTCACAACCAACACACAAACCCTAGTTGCTCCCCCCTCACCCTCCTCCTCCTCCATTTCAATGGCC GCAGCTCGTCCCCTTGTCACCGTGCAAGCCCTGGAGGGCGACATGGTTGCCGACGCTGCCTCAACCATTCCCATCCCCGA TGTCATGAGGGCCTCCATCCGTCCTGACATCGTCAATTTCGTCCATTCCAACATCTCCAAAAACAGCCGCCAGCCTTACG CCGTCTCCCGCCGCGCCGGCCACCAGACCTCCGCCGAGTCCTGGGGAACTGGTCGCGCCGTCTCCCGTATCCCCCGTGTT CCTGGTGGTGGTACCCACCGTGCTGGCCAGGGAGCCTTCGGAAACATGTGCCGTGGTGGTCGCATGTTCGCTCCCACCAA GATCTGGCGCCGCTGGCACCGCAAGATCAACGTGAACCAGAAGCGCCATGCTCTGGTCTCCGCCATCGCCGCCTCCGCCG TTCCTTCACTTGTCCTCGCCCGCGGCCACCGCATCGAGACCGTCCCGGAGTTTCCCCTTGTCGTCAGCGATTCCGCTGAG GGTGTGGAGAAATCCAAGGAGGCTATCAAGGTTCTCAAGCAGATCGGTGCTTTCCCTGATGCTGAGAAGGCCAAGGACAG CACTGGCATTCGCCCTGGTAAGGGGAAGATGCGCAACCGTCGCTACATTTCTCGCAGGGGTCCTCTTGTTGTGTACGGTA CCGAAGGCGCGAAAGCGGTGAAGGCTTTCCGCAACATTCCTGGTGTTGAGGTTGCCAATGTGGAGAGGCTCAACCTTTTG AAGCTCGCACCTGGTGGGCACCTTGGGAGGTTCGTGATTTGGACCAAGTCTGCATTCGAGAAGCTCGATTCGATTTATGG GTCATTCGATAAGCCTTCGGAGAAGAAGAAGGGTTACTTGCTTCCAAGGTCCAAGATGGTGAACTCTGATCTTGCTAGGA TTATCAACTCTGATGAGGTTCAGAGTGTTGTCAGGCCGATCAAGAAGGATGTGAAGCGTGCTACCCTGAAGAAGAACCCA CTGAAGAACCTCAATGTGATGCTGAGGCTCAACCCCTATGCTAAGACTGCTAAGAGGGCGGCTCTGCTTGCTGAGGCTCA GCGCCTTCAGGCTAAGAAGGAGAAGCTCGATAAGAAGAGGAAGATCGTCTCTAAGGTAATTATATTTCTTCCAATTGTTG ATTTTTACCTGCCTATCTTATTGAGGTGCATTCATGTTTGTGGAAATTGTCTTATTGAGGTGCAATATTGGTGTATTGAT TGTTTATTGGTGTCATGAGTCTAACCTTGTATCTTAGTGTGTTCAATTGTATTTTTATTATTTGGCATCTACAGCTCAGT GTGTTTGTTTCGTTTAGTAGTTAGTATTCTGTAAAAGATGTAGGCTAATTGCATTGAGTTTGATCTGCATAGTAGACTGT GTGCTAGTATTATTTTGAATGTCTTATATTTAACTATCTTTGGGATGCAATCATGTTTGAACACTTTTCAATATAGACGT CCTGAGGAGAAATTATATACATTGTTACTTTAAAATAGTGGATATCAACATGTGTTTTTCCATTTAAGTTGAAGAAATTT TTACCAGACTTGAACTTAGAATATTGACGAGTTCCATGTATATTGTCTACATTTGTGTAAATCACTTTTCATTAGTAACC TATGTGCTTTTTGGCAGTGCATTTACATTGATGAAATGATGCAAGCTTGCTATTAAAATTAGTAGAAATGACATTCTAAT TGCATTCATTAAAGAAATTATATTCTAATAGATAGTGGGTATGGATTGTGCTACTCTCATGTGACAATTTTGAGTATCTC TTACTAGTTGCAGGTCGGACAAAAACTTAATTTTTCTTCACTATTGACGTTTAACCTTGTGTGGTCATTGAGTTTTGGTT CTGCCATTCCACATGTCCTCCATGTTGTGTGATCTCTGATGTAGTGTGCATTTCAAAATGCGTTTTTTTGTTAGTACTTC ATTGTTTTGATTGACTTTTTTCCCTTGTCTCTTATAGGAGGAAGCTTCTGCCATCAAGGCTGCAGGAAAAGCTTGGTATC ACACCATGGTGTCAGACTCAGATTATACCGAATTCGACAACTTCTCTAAGTGGTTGGGTGTGTCACAGTGATGTTAATCA TTTATATTATCGCTTTAGTTCTTTGTTATGTACGCTTTTCAGCTAAAATATTTTTGGATTTTTGTTTGCGGGTGAGGTTT AGCATACTATTCAGACAATATCCGAATTTTGTTTTTCTTATTTTAGTTTGAACTCTGTTGGTATGATGTTTTGCTGTTGC AATTTTATCTTGGTTTTCTGCCCTGTCCTTGTAGTCTGGTTACATGTGTTTTTGGCCAAAAGATATAAAACATATCGAAC ATGGGAATTAAAATGGGTTCTCAATCCTGAGAACAATGTGCATGATTTTAACTTGCATGTAGGAACCTGATATTTTCATG TCCAATCTTCCATAGGCTTCATTTTATTGCCCTGTTCACTTGTTTCTGATTTCATTTTCGTCACTTTTGAGACATTGTAT TCATGTGTAAATCTACACTATTGTTCCTATTAAAGATATAAGGTTAAAACATCTTAAAATTTACAAAATCTAAGCCAGTT ATAACAATTTTGTTTGTTCACTGATTTAGTGCTTCTAAGGTCTTAGGTGACGCACCTCATGTAGCGTCTTGGATTTCTTC CCTGTTCTGCACTATTTGTCTTTTTTCTTTGTTCATGTGTTGTTTTATTATTGCGAATAGCAGATCCATTTATTTCAAGA GTAACTCTGCAAACTTACTTTCAATCCTCAAACCCTATACGGTTCAGATGATTTCCTTAAAACCCTCATGTAGCTTTCTC AATTAGTGGCTGATGTAATTTGAGCGCAGATGATTTCCTTAAAACCCTCATGTAGCTTTCTCAATTAGTGGCTGATGTAA TTTGAGCGCTTCTCTTTTGCCTCTTCATTTATGTTGCACCGACTATCTTTCGGTAGACTTCTGCCTATAATCTTTCAAAA TGAGTGTCTTTGCTTTTTCCAGAGTTTTTAATGGATTTTCATGGTAAATTAGGAGTTGTTTCCCTTTGTCATTTCCTCTC AATACCTGTTTTGTTTAATGTTTATCTATTTTTCATGGTTAACAATTGCCATGAAAATAAATTACTTTTTAAAGGAATTA GAAACAATTGCTATTAGCCTATTACGCATAGAACAATATACTGCAACTGTAGTTTAAATCATGTTTCCCTTTATCAACTC GGTCAAAATATCGGACAATTAAGTGTTTAAATCAAAAATAAAAAAGGGAGTCTATTTTTTTCTTTTGGAAGGAGGAGTTG AGCCGTTTCCACATTCCTCTGCTAGGGTTTATTTTCAGTGAGCAACGTTTCCCCCCTTGGGGGCTCCTCCCCTTTGGGGG ACTCCTCCTCCTCTAGGGAGGCTTTCTTGCTTATTTAGTAGGCTTTTCTTCCCATAATAGGTGGGTTCTTCTCCACAATA GGTGGATCTCTTACCCAAATAAGAGTTTTTTTTCCTGATTTTGTTCAGGCCTCTTTCCTGATTTTGTTCAGGTCTTCTTC CCTTCCTTTGGTCACTTCTATCGCCGCCGCCTCCGCCACCTTCACCTGCCATGGGAACCTTGAAGCAGATCCAGTGGTGT GACGCTGCCACCATCTCCTTGCCGTAAGCATTACCGCATCCCGGACCATGAACGAATTCCAGATTTCAGCTTTCAAAACC CACTGTCCATCTCTTGCAAGGTGCTGATTCGAAAGGTGGAAGCTTTGGTTCTGCTCTGACTTGGAAAGGTAATACAAGGT TGGGTCATTTGCAGTTCTCTATGTGCTGCCTTTGTCATTTGATTCACCCCGTGTTGACACGCTATGCATCTCTCCTCGTC CGTTTTCTCGGTTTGAGCTCACACCGTCAGCATGCTGTGTCCACACTGTCTCTGCTTCCCCTCAGCTTTCTGCTGTTGCA TGTCTCGGATCTACAGAAGTCTCTTTTCACCCCTTTTCTCAGAGTTGCATGATTGTCCCCCGTTAGTGCCGCTGAAGTCA AGTGTTGGGCTTCTTGAAAGCTGCATAGCTAGCAACTCCGGCAGAGTCGACGAGTTGTTCTAAGGGGAGCGTTGCATAAA ATTGAGGATATAAGTTTTTCGCTCTGAAGACAATTAGTTTCTGTTAATTTGGAGTTTTAAAGGCTTTTGTACGAGCCTTA GGGTTTTACATCATGGTTCTTAGCTGGTTTGTTCAGCTCTTGTGTGTTTGAGTGTGCATACTTGATCTTCATTTGCTTAT GTTTGTGTATTGCGGATCGCTCTTTGAGATTTAGTCTCACATGATGTAAGTGCCGTTTGGTAACCCTCGGGTTTTTATTC AAAACTTCATTG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0073200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTCCTATCAGTCACAACCAACACACAAACCCTAGTTGCTCCCCCCTCACCCTCCTCCTCCTCCATTTCAATGGCCGC AGCTCGTCCCCTTGTCACCGTGCAAGCCCTGGAGGGCGACATGGTTGCCGACGCTGCCTCAACCATTCCCATCCCCGATG TCATGAGGGCCTCCATCCGTCCTGACATCGTCAATTTCGTCCATTCCAACATCTCCAAAAACAGCCGCCAGCCTTACGCC GTCTCCCGCCGCGCCGGCCACCAGACCTCCGCCGAGTCCTGGGGAACTGGTCGCGCCGTCTCCCGTATCCCCCGTGTTCC TGGTGGTGGTACCCACCGTGCTGGCCAGGGAGCCTTCGGAAACATGTGCCGTGGTGGTCGCATGTTCGCTCCCACCAAGA TCTGGCGCCGCTGGCACCGCAAGATCAACGTGAACCAGAAGCGCCATGCTCTGGTCTCCGCCATCGCCGCCTCCGCCGTT CCTTCACTTGTCCTCGCCCGCGGCCACCGCATCGAGACCGTCCCGGAGTTTCCCCTTGTCGTCAGCGATTCCGCTGAGGG TGTGGAGAAATCCAAGGAGGCTATCAAGGTTCTCAAGCAGATCGGTGCTTTCCCTGATGCTGAGAAGGCCAAGGACAGCA CTGGCATTCGCCCTGGTAAGGGGAAGATGCGCAACCGTCGCTACATTTCTCGCAGGGGTCCTCTTGTTGTGTACGGTACC GAAGGCGCGAAAGCGGTGAAGGCTTTCCGCAACATTCCTGGTGTTGAGGTTGCCAATGTGGAGAGGCTCAACCTTTTGAA GCTCGCACCTGGTGGGCACCTTGGGAGGTTCGTGATTTGGACCAAGTCTGCATTCGAGAAGCTCGATTCGATTTATGGGT CATTCGATAAGCCTTCGGAGAAGAAGAAGGGTTACTTGCTTCCAAGGTCCAAGATGGTGAACTCTGATCTTGCTAGGATT ATCAACTCTGATGAGGTTCAGAGTGTTGTCAGGCCGATCAAGAAGGATGTGAAGCGTGCTACCCTGAAGAAGAACCCACT GAAGAACCTCAATGTGATGCTGAGGCTCAACCCCTATGCTAAGACTGCTAAGAGGGCGGCTCTGCTTGCTGAGGCTCAGC GCCTTCAGGCTAAGAAGGAGAAGCTCGATAAGAAGAGGAAGATCGTCTCTAAGGAGGAAGCTTCTGCCATCAAGGCTGCA GGAAAAGCTTGGTATCACACCATGGTGTCAGACTCAGATTATACCGAATTCGACAACTTCTCTAAGTGGTTGGGTGTGTC ACAGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0073200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVLSVTTNTQTLVAPPSPSSSSISMAAARPLVTVQALEGDMVADAASTIPIPDVMRASIRPDIVNFVHSNISKNSRQPYA VSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRHALVSAIAASAV PSLVLARGHRIETVPEFPLVVSDSAEGVEKSKEAIKVLKQIGAFPDAEKAKDSTGIRPGKGKMRNRRYISRRGPLVVYGT EGAKAVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLARI INSDEVQSVVRPIKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRAALLAEAQRLQAKKEKLDKKRKIVSKEEASAIKAA GKAWYHTMVSDSDYTEFDNFSKWLGVSQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 23 23 - –
SignalP_GRAM_POSITIVE
SignalP-TM
1 21 21 - –
PANTHER
PTHR19431
26 428 403 1.1E-252 –
PANTHER
PTHR19431:SF4
26 428 403 1.1E-252 –
Gene3D
G3DSA:3.40.1370.10
26 332 307 1.4E-138
IPR023574
SUPERFAMILY
SSF52166
45 290 246 8.11E-79
IPR023574
Pfam
PF00573
50 289 240 1.3E-38
IPR002136
MobiDBLite
mobidb-lite
77 96 20 - –
MobiDBLite
mobidb-lite
77 119 43 - –
ProSitePatterns
PS00939
143 169 27 -
IPR013000
Pfam
PF14374
303 375 73 1.9E-30
IPR025755
Coils
Coil
365 392 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0005840
Cellular component Ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0073200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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