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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0076900 |
| Transcript ID | LotjaGi5g1v0076900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Syntaxin, putative; TAIR: AT3G09740.1 syntaxin of plants 71; Swiss-Prot: sp|Q9SF29|SYP71_ARATH Syntaxin-71; TrEMBL-Plants: tr|K0J6E7|K0J6E7_LOTJA SNARE protein; Found in the gene: LotjaGi5g1v0076900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12602691..12607490) extracted from Lotus japonicus Gifu genome v1.2.
ATACAATTAAATCTAAGAAGAAAATACAGAATCAGGTTTTCAAATTTCAAGTTTCTTCTACCAGCTCAAAAGAGTTTTTT ATTTAATAAAAAAATAGAAAAAAACTGCTCCATGTTCATTGTTGCTACTTTGATACAGCTGTCTACAGTCTCTTTCCTTT GCAAGTTCTGCTGAAACAAGAACCAGATCGAACTCCACCATCCCCAAATTCAGTTATTGTTGACTTCGTGAAAATAAGAT TCCATTGTTGACTCCACCACCACACACCATGAGCGTCATCGACCTTCTAACCAGAGTTGACACCATTTGCAACAAGTACG ACAAATACGACGTCGAACGCCACCGTGAATCCAACCTCTCCGGCGACGATGCATTTGCCAGACTCTACGCCACCGTCGAC GCCGACATCGAGGCACTCAATCAGGTCAGTGTCTTGATTTTGTGCCCTAATTGGTCTAATCTTGTATGGGAATTAACGAT TTCGAGTTGAATTTCTCGATTTTGTGTAGAAAGCTGAAACTGCTTCTAAGGAGAAAGGTAAGGCTTCTGCTGTAGCGATC AATGCGGAGATTCGTCGAACCAAGGCTAGGTTGCTTGAAGAAGTTCCCAAGTTGCAGAAATTGGCTGTCAAAAAGGTTTG TTGGGTTTTTTGATTTGGGAATTCTCATCAATTTTGTAGCTGGAGTTGTTAAGCTGCAATGAATGTTGACTTGTTTTGCT TAATGAATCTAAGTAATAGCTTGTTTGCTGCTAAGATGATTTGTTTAATGGAATTGGAGATTTTTTTGTTAATGTGTGAA TTTTGAGAAAAACAAGACAGATTGTGTGTTGGAAAACCTATTAGGTTTTTAGGTTGGGAAGAGAAGTGATTTTGGTTGAA ACTACTGATAATAGCTTTCATTGGGAGAGAAGTGATTCTGGAAGATTTAACTGTGGATCCAAGAGCACGTTGTTTATTGT ATGACATCTGATTTTACTAGTGCAACTATCCATCTATGAAAAGGAGCAGACTTGTTATTTCTGTTTATAACTCTGATTGT TTCAGTTTATTATTGACATAGGAGAAGCTTTCTTGGTTAGCTTCTCGAAAAGCCATTAAGTTTATGAAATATGATTCAAT TTAACCAAAGTTCCAAACATTACTTTTATACAGTGAAAATGCTTAATCCAAAAAAGAAGGTACCCGTTTGGACCAATAAA CACTTATTGAAGCTTATGTAGTGCTTTTTCTACTAGATAAGCTCCGATAAGTCCGTATCAGTACAGGCTCAACTGCTCAA GGTCTCATACACCCTTCTAGCCTGTATCCAAATTGGATCTTCCATTTTGTTGGAAATATAATCATTCATATGTCCTTTAC TCAATAGCTTATTTTGTTGGAAATATAATCATTCAGATGTCCTTTACCCAATAGCTTAAGCTTTTGGGATAATTGGTTCC TGATATAGTATCAAAGCCTCTATAACTAAGTGGTCTAGAGTTCGACCCTTGCCGTTCCCAATTCTTCTAATAAAAAGTTG AATTTTAGGACATGGTAGGTGGACCTGTGCATTGTCCACTCCACGCTTCAAGCCCAAGTGGGCTCTTGCATGAGAGAGCG TGTTAGAAATATAATCATTCATATGTCCTTTACCAATAGCTTAAGCTTTTGAGATAATTGGTTCATGACACATTTGGTTT GTTTGTTTTCTCCAAAGCCTGTTTGTTTGTTTTGCACTAAGTAACTTAATTGCATGAGGAGTTTCAAATTTAGTAGCATT TGGATGGTGCATGATACAATATATCCACAGGTAAAGGGGCTTTCATCGCAAGAATTTGCTGCCCGTAATGATTTGGTTCT TGCATTGCCGGAGAGAATCCAAGCTATCCCAGATGGGACTCCTGCTGCGCCAAAACAAACTGGAGGCTGGGCATCTTCGG GCTCACGTCCGGATATTAAGTTTGATTCTGGTAATTGAAGCTATCCATTCCAATGTCTCAGGCTGATTCAGTTATAGTAT TCCATCTGTGGGAGGCTTTTGGATTGATTGCTCCATTCTTATGTGTGAATTACTGAATCATCTCAAATACAGATGGGCGA TTTGATGACGAATACTTCCAACAAACTGAGGAATCAAGTCGATTCAGGAACGAATATGAAATGCGTAGAATAAAACAGGC AAGTATCTTTAGCAGTTGTGAGAACTTTGCTGTTGTCTTTTACTTGATATATATGCTGATTGTTGAATGTCAATTGACTC AGTCAAGCAAGGGTTTCAACTTCACTCTCTAATTAGATATGTCATATAACTTTTTAGGATCAAGGTTTGGATGTGATTGC AGAAGGGTTGGATACATTGAAAGACATGGCACATGATATGAATGAGGTCAGTTACCTTATTGTTTTTATCTTCCCTCCTC TGTGTGTGTGTGTGTGTGTGTGTGTGTTCAAATACTTGTTTCTGAATTTTTGTTTTTATGTCATTTTGTGCAAAATACAG GAACTGGATAGACAAGTTCCACTGATGGATGAGATTGACACTAAGGTGAGAATTATTAATTTCGCCAGTACCCCTATGGC CCAATCAAAGGCTAAAGAATTTGAAATATCGGCTTTTGCAACTTGAATGGCTAAGTTGAAGTTAATCTGATACAATTTTT TGTCATCTTTACAGGTGGACCAGGCAGCATCTGACCTTAAGAATACCAATGTTAGACTTAAAGACACAGTTATCCAGGTT ACCTAACGACAACTCTGGTCTAAGATTCCCTTTAAGTTTTAGTTATATCAGTGATAGATCTCTTCCAGTGTTGCTTACAT TTTATGCATTTTGGTTTTCACACAGCTTCGGTCCAGTCGAAATTTCTGCATCGATATTGTTTTGTTGATTATAATTCTGG GAATTGCTGCCTACTTATACAAGTAAGGCTGCTATCTCTTTTCATTAACTTTTTTCTCATGAATTTTAAGCCAAAAGTAC TTCTTCTAGCCCTGCCTAATTTGCTTGTTGATTTGAATATGGGAACTATTTACTCTGTCACTTGAGTTTACATTTTTTAT TTTGCCCCTTGCATTGAAGATCTAAAACGTAAATTCTGAAATTGGGCACATGGTTTGTTAGTAAAGCATGTCTAATGTTT CCAATGTCTGAACCGGTCATTGAACCACCTAAGACATTTCATTGTGTATTAATTCAACTGTGGTCAAACCAATGAGTATA TTTTATTAAAAATTAACAGTACTATTGACTAATAAACATATTGTATGTCATGTAAAATAAAAAATCAATTAGGGAATAGA TAATAATAATCCATGTACATTGGTTATAATTTGACACTGGACCTTTTATTTGGCCAAAATGTATTTTTTATTAAAATAAA ATTAGAAAGAGAATAATTGAATAAAACAGAAATGAGTTGGTTCAAATTGTTATTTTACCACTGGTTCTGGACCGGTTTGA TCAGTTATCACTGAATTCTGAAATACACCTGACCGGATCATCAGTTTTCTAGTTGAACTGGCTAGTCCGATCCAGTTTTG TGAACTGTGTATTCCTACTTTGTTTATTTAACTAAAGTGTGAAGTCACTGCCGAACATACATAATCTCATATTCTTCCTT AGATCCTGTGTCTCTTGTACCTTTGCTTAGTTTCCTACAATGGTAATCCTGTCATTGATTTCCTTCGCGATTCATATTAG CATCTCCTCCACTGCCTCGTTTAAATAATCATAATTCATGACCCTTCCATAGTGCTGTACTGCCAAATTTTATTGTAATT AGGGGAAGTTTAGGTGAATTGTAGCTAAGGCATCCGTTTGAAATTAGAGAAGAATATGCTTTTCCAGTAAAAATAGAATG TTTACCTGAAATAGTTACTTGTGATTTGCAAACCGCTCTAGCCAAATGAACTTCTGGGAAATTTGAAATGATACCATCAT GTTATAGAAAGTTCAATCATATTCGTGGAGATGATAATCATGTAATGGTAGCAACTAGGGTAGGGAGTATTATAATTTTC TAGAATTGGGGATTGTGCATGTAATTTCCATTTTGACCCCCCTATATTGTTTCTTTAGAACATAAGAATAGAAAACTACA GTATAAATCAATTCCAATGCAATTGTGTTGAAAACAATTTATGTTCTGTTTGTACTTAAAATTTAATATTGTTATCTGTA GGAAGAGTTATTAGCTGAAACTCTTGTAAGTAATTCATGTTGGTCATTTTATTATAGCGTTGCTGAGATAATGGTTATCT TGGCATTTTCTTGGGTGGTGTTTACTACTTATCTTCCATGCTTTATTTGCTTCTTGGGATAACTTTCTGATTTGCGTTTG CAGTGTATTAAAGAAATGAATAGATGCACAAGACCACGGATGTGTTCGAATGGTTTCCTTATAATTCTTGTATCACAAGA ATATCGTATCAATTTTTTTTTTTCAATTTTTTTTTTCTATCTTTGTGAAAAATTCTACTATCTGAGAGTTATACTGTCCT TTATATAAGCAGTCTTGCGTCTGCAGTTATGCTCCATAACATTAGTATGTTTAGTAGTTGCGGCTTGTTTTGTATATTTG ATTAGGTATATTATGTTTATACATTATGGATACTGATGAATCTGGAAGAGTGCTTTGACTTGTGTTGAATTCTTCAAGTT GAAGTTAGCTACGAACATGAGGGGGAAAAAAGAGATCCGCTTAATGAAAGAAGTAATTCGAGTTAAGCTAACTATATTTT CGTGACAGCAGTCTTCGGCTAAAACTACGTGTTTCAGATGATTGTTGATTCATATACCGTCTCGATATTTGAACTCCCGC
CDS sequence (LotjaGi5g1v0076900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGTCATCGACCTTCTAACCAGAGTTGACACCATTTGCAACAAGTACGACAAATACGACGTCGAACGCCACCGTGA ATCCAACCTCTCCGGCGACGATGCATTTGCCAGACTCTACGCCACCGTCGACGCCGACATCGAGGCACTCAATCAGAAAG CTGAAACTGCTTCTAAGGAGAAAGGTAAGGCTTCTGCTGTAGCGATCAATGCGGAGATTCGTCGAACCAAGGCTAGGTTG CTTGAAGAAGTTCCCAAGTTGCAGAAATTGGCTGTCAAAAAGGTAAAGGGGCTTTCATCGCAAGAATTTGCTGCCCGTAA TGATTTGGTTCTTGCATTGCCGGAGAGAATCCAAGCTATCCCAGATGGGACTCCTGCTGCGCCAAAACAAACTGGAGGCT GGGCATCTTCGGGCTCACGTCCGGATATTAAGTTTGATTCTGATGGGCGATTTGATGACGAATACTTCCAACAAACTGAG GAATCAAGTCGATTCAGGAACGAATATGAAATGCGTAGAATAAAACAGGATCAAGGTTTGGATGTGATTGCAGAAGGGTT GGATACATTGAAAGACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCACTGATGGATGAGATTGACACTA AGGTGGACCAGGCAGCATCTGACCTTAAGAATACCAATGTTAGACTTAAAGACACAGTTATCCAGCTTCGGTCCAGTCGA AATTTCTGCATCGATATTGTTTTGTTGATTATAATTCTGGGAATTGCTGCCTACTTATACAATGTATTAAAGAAATGA
Protein sequence (LotjaGi5g1v0076900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVIDLLTRVDTICNKYDKYDVERHRESNLSGDDAFARLYATVDADIEALNQKAETASKEKGKASAVAINAEIRRTKARL LEEVPKLQKLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPAAPKQTGGWASSGSRPDIKFDSDGRFDDEYFQQTE ESSRFRNEYEMRRIKQDQGLDVIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDQAASDLKNTNVRLKDTVIQLRSSR NFCIDIVLLIIILGIAAYLYNVLKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 245 | 245 | - | – | |
| PANTHER | 14 | 261 | 248 | 9.1E-118 | – | |
| PANTHER | 14 | 261 | 248 | 9.1E-118 | – | |
| Coils | 40 | 60 | 21 | - | – | |
| MobiDBLite | 121 | 148 | 28 | - | – | |
| Gene3D | 152 | 233 | 82 | 4.0E-16 | – | |
| SUPERFAMILY | 166 | 230 | 65 | 3.48E-14 | – | |
| SMART | 166 | 232 | 67 | 0.0064 | ||
| ProSiteProfiles | 170 | 232 | 63 | 14.361 | ||
| CDD | 175 | 230 | 56 | 1.2188E-15 | – | |
| ProSitePatterns | 176 | 215 | 40 | - | ||
| Pfam | 207 | 256 | 50 | 4.3E-11 | ||
| TMHMM | 244 | 263 | 20 | - | – | |
| Phobius | 246 | 263 | 18 | - | – | |
| Phobius | 264 | 265 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | SNAP receptor activity | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi5g1v0076900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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