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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0077200 |
| Transcript ID | LotjaGi5g1v0077200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT5G03150.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q700D2|IDD10_ARATH Zinc finger protein JACKDAW; TrEMBL-Plants: tr|A0A151TUV7|A0A151TUV7_CAJCA Zinc finger protein JACKDAW; Found in the gene: LotjaGi5g1v0077200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12623416..12627094) extracted from Lotus japonicus Gifu genome v1.2.
CGCTGTTTGTCTATGACTACGTGACTCTGATCTGATCCTGATTTTTAATCTCTCGCATGCTAAAAAGGGGTGTGCATCTT CATCACTGTAATTATGGCTTAATCATTCTACTTCTCATAAAGGCTCTGGTAAAAGGTAAACCACTTTTCTGTTACCCTTG GGCAGAACAACCACGGAATCACTTTTTTTAACCTTGATTTTCTAGATCAACTTCATGCACACTACTACTCACAAGCAGTC AACCACAACAATCATCTCTACTATATACTATGAGTCTAGCTACAAGTAGTACTACTACTTTTACTATTTAGCTCTCGAGA AATTCAATATCAGATCATATTTTTATTCACTTCTACGAAAAGCTAGTACTTACTTCGAAAGCTTTTTTTTTTTTTAAATT GGAGTTTGTGCTAGAAAATAAGGTCATCAAAGAAACTACCCTCCATCTACATTTAAATTTAACACTTTAACACCATTTTT TCTAACACTCTCTAACTAATTAGTTAAAATTTATCGACAATTAAAAAGTGTTAAAATAAGTTAAAAGAAATTTAAAAAAC AGTTTTTGCTGTGTGCTAGCATCAGCATTCGTGTGATTTCCATGAAATTGATTATAACAAAATTAATCATATCAAAAGTG AAAAAATTTATGTTTAAAACATTTATAATAAATGATTTTTGTTAAATAGTATTATGAAATTCATTGGTGAAATCTCATAA TAAATTGATCATATATGTTTAACATATAAATTACTTTCTCTAGCTTCTAGGTAAATTGTTTCTTGATCTTAAATCAAATT AACATAATTACTTTCAAATTTGTTAAATTTTCATTCAGAAATTATTTTACTCTACATAATTAATTCTCACAAAACACACT CTCGATCCCTCAAACACAAGACACACCATTCCACAATATTGTGCGTGTGGTTTGTGTTTGTTTTTGTATGTCCCTGTGTG TGACAATGAAAGAGAGAGAGAGTTTGTGCAATTTGAGTGTGGTGGCCCATCAGAATACATGGCTCACCGTCTTTGAGGAC ACCATTAAACAAGATGAGAAAGAGACTACTCCCAAGACCAAACACAGCAAGAGAGAGAGAAACGAGGTCATGAAATATTA TAGCTATCCTATTCCTACATGTTTATATAGTAGGCTTTTGGTTTTATCTCCTCAGAAATGAAACCAAACAAACAAGAAAC CGGATCACAAGTTGGAAGCTCTTGCATTAGTATTATATAGTTTTTCTCTTTTCAGTCTCTTTAAATATTTTTGGTTCGAC TCAACTCAAGTTTCGTTTATGGCTTTTTCTTGTCTTTTGGCAGAACGATACGCATAGCAAAAGAATTTGGGGTACCCTCC AAAAGAATTTATGTTCGTTTCTTGGCTTTTGCTACTCCAAAACCATTGTTTTCTTCCTTGTACTCTCTGAAAACCTTTCA AACTTTCCTGTTTTCTTCTGCAACCTGCCTTTTCTATAGCCACCACTACACCTCCCTTTGCTATATAGCTTTCTCAAACA TGCAAATGATCCCAGGTGACCCCTTTTCATTATCCACTCCACTCGGAGGGTTTAGCACTCAAGAGCAAAACACAAACCCT AACCCTAAACCTAATGCTCCGACCACCACCAAGAAGAAGAGAAACCTGCCCGGAACACCAGGTTAGACATCATCATTATT GACAAAATTAAAACTTTAATCTTTTCTACTACTATGAGCTCCCTTTAGATACAAAAATAAATATAAAATAGTTATCAGAG TTTTTATGCTAGAAAAAGTACTAAATAAGCTTCGATAATTGCTTTTTAGTCTGCATCTGAACGAACTGATTTTTCTTCCT CTAATGAACTTTGCATTGTGATTTCTTGATTGCAGATCCAGATGCCGAGGTCATTGCTCTCTCCCCAAAGACCCTCATGG CGACGAACCGCTTCGTCTGTGAAATATGCAACAAAGGCTTCCAGAGAGACCAGAATCTCCAGCTCCACAGAAGAGGCCAC AACCTCCCATGGAAGCTCCGGCAGAGATCCAACAAGGAGGTTCGTAAAAAGGTCTACATCTGCCCGGAGAAGACCTGCGT CCACCACGACGCGTCGCGAGCACTCGGCGACCTCACCGGCATCAAGAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGT GGAAGTGTGAGAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCTCACACCAAAACATGCGGCACCAGGGAG TACAAGTGTGACTGTGGCACCCTCTTCTCCAGGCACGTAATTAATACACACAAACACAATCTCCTTAGTTTTCAGCAAAT CTTTGCTTTCTTCTATTGCAAAAGAATAAAAATTAAATGCTTCTTTACATTTCATATTTATGTAACATGTCCGAGGTTTT CTCATTCGTTGTTAGGTTTGTGAATTTAATGCTGCTTCCTTAATTATTAATGGCGATTGAATTTTTTTGCTTTTTGTTTG GTTTTCATTGAATGATGAACAGAAAGGATAGCTTCATAACACATAGAGCTTTCTGTGATGCGTTGGCGGAAGAGAGTGCT AGGCTAACCTCAGTTACTTCTTCTACAAATCTGAATTTCAAGGATGAAGATTGTATTTCTTTGATTCCAAAAAATTTTGA TGGCAGCATTCCGCAGTTTGGCCCACACGGGTTTCGCCTGGATTTCAACCACAACAATAACTCTTTGATGGGTGCTGGTG ACCAACACCAACATATTAGGCCGAGTTTGTCGCTGTGGTTGAACCAGGCAAACCCTCCTCCTCATCATCCTCACGATGTG GGAGGGATTTTCGTGTCGTCGTCATTGGGTTTGCCTGAGATTGTGCAAATGCAACAACCACAGGTTCACAATAATGGCAT GATTGGGTCTTCATCAATGTTGCCTAATTTTGTTCCTGGTTCGAATTCAAACACTGCAAGCCTTTCACTTTCTGAGGGTC AAAATAAGCAATCAAATTCATCAAAACCTGCTTCTCCTATGTCAGCAACTGCCCTTCTTCAGAAGGCAGCTCAAATGGGA TCCACTAGAAGCTCCAACAACCCTTCCATTTTCAGTGGTAGTTTTGGGGTGATGACCTCATCACCTAACTCCTCTCAAAC TACCACTACTCTCAACAATAATAGCCATAATGGTAATGAGATTAACCAGGTTTTTCAGGCCATGAAGCAACCACAGGATT TTACTTCAAATGGAGGTGAAGCCATAATGGGGAATAGTGCCAGTTTCAGCTCAATGGCGCATTCATCAAACGCTTATGAT CAACTTGTGATGCAAAACAATGGGAAAATGAAGCTCCACCTTTCAAACGCTGCGGATCATAATTTGACAAGAGATTTTCT TGGCGTGAGTGGAGGAGGAGCTGGTCCTCAATTCCTACCTCAAGAGCTAGCAAAGTTTTTGCATCCATAGGTTCAACAAT GGGGTTGAATCAATTCACAGTCAATCAATCAGTGAATTTTTGTTTTTCTGAGAAAAGTTCGTTCATGTCAAGTGTTTGTA AGATATAAATTTGAAATGGAGGCTTAATGGGATGTTCAATTGGCTCTTGTTGTTGCTTTTAGATCTTCTCATGTAATGTT AAAAGATTTATGTTTTCTTCATAAATATTTCCACTTATTTAATATTGAATAAACACAAAATTTTACTCCTTCTCTTCTC
CDS sequence (LotjaGi5g1v0077200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAATGATCCCAGGTGACCCCTTTTCATTATCCACTCCACTCGGAGGGTTTAGCACTCAAGAGCAAAACACAAACCC TAACCCTAAACCTAATGCTCCGACCACCACCAAGAAGAAGAGAAACCTGCCCGGAACACCAGATCCAGATGCCGAGGTCA TTGCTCTCTCCCCAAAGACCCTCATGGCGACGAACCGCTTCGTCTGTGAAATATGCAACAAAGGCTTCCAGAGAGACCAG AATCTCCAGCTCCACAGAAGAGGCCACAACCTCCCATGGAAGCTCCGGCAGAGATCCAACAAGGAGGTTCGTAAAAAGGT CTACATCTGCCCGGAGAAGACCTGCGTCCACCACGACGCGTCGCGAGCACTCGGCGACCTCACCGGCATCAAGAAGCACT TCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCT CACACCAAAACATGCGGCACCAGGGAGTACAAGTGTGACTGTGGCACCCTCTTCTCCAGGCACGTAATTAATACACACAA ACACAATCTCCTTAGTTTTCAGCAAATCTTTGCTTTCTTCTATTGCAAAAGAATAAAAATTAAATGCTTCTTTACATTTC ATATTTATGTAACATGTCCGAGGTTTTCTCATTCGTTGTTAGGTTTGTGA
Protein sequence (LotjaGi5g1v0077200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQMIPGDPFSLSTPLGGFSTQEQNTNPNPKPNAPTTTKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQ NLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDASRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKA HTKTCGTREYKCDCGTLFSRHVINTHKHNLLSFQQIFAFFYCKRIKIKCFFTFHIYVTCPRFSHSLLGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 50 | 50 | - | – | |
| MobiDBLite | 13 | 42 | 30 | - | – | |
| PANTHER | 18 | 181 | 164 | 4.8E-131 | – | |
| PANTHER | 18 | 181 | 164 | 4.8E-131 | ||
| Gene3D | 63 | 90 | 28 | 4.9E-6 | – | |
| SUPERFAMILY | 66 | 163 | 98 | 1.4E-7 | ||
| ProSiteProfiles | 67 | 89 | 23 | 10.949 | ||
| SMART | 67 | 89 | 23 | 0.017 | ||
| Pfam | 67 | 89 | 23 | 5.3E-5 | ||
| ProSitePatterns | 69 | 89 | 21 | - | ||
| Gene3D | 100 | 190 | 91 | 7.2E-6 | – | |
| SMART | 108 | 138 | 31 | 120.0 | ||
| SMART | 143 | 163 | 21 | 130.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi5g1v0077200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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