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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0077300 |
| Transcript ID | LotjaGi5g1v0077300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G09760.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7; TrEMBL-Plants: tr|A0A151U466|A0A151U466_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0077300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12634503..12640959) extracted from Lotus japonicus Gifu genome v1.2.
AAATGAAAGGAAAAAAAGAAAAAAAAAACTCCCTCAGAAAGCTAATCTCATCATGATATGAATGTTCCTAACTAGACATG ATTGCCCGGTAGTGAATATATTTATTGCACATAAAAATGCCTAACCATGTATTATATATGATGCAAGACTTGTATTTTGT ATTTAATTGAGAAAACATGTATCATGTCAGCTTCATGCTTATTCCATAAGCTGTTTCCATGGTGTCTCTCTTCTCCACTA CTTGCTATATACTGTCTTTGCTTCTCTCCAGCGAATTTCCAGCTCCCATGATCAAGGGAAGGTTTCATCTAATTTCTTTC CAAAAATTTAAAAAAGTGTCTCAGTTTCCAATTTTCAGCTCAAACTTGTGCAGCTTTTCCTCTTTGGTTTGGTGGGTTCC CCATTGACTATGGCAACTGAAGGTGCAAACTTTTCCAAGGATAATAATAACCAAGGCGCTGGCACCATTGAAGATAAAGT TGATATCCAAATTCAGAAGGTGCTTCTAATGCTTCTATTCTTTATCATACTTTTGATTAACACACTTGAAGTTGAATATT TGTTTTCTTCATCTGAAGCTTGTGGGTATTCTTTGTATGCATTGACTTTACATGTTTTATAGGAAAGCCTGCCATATTGG CATCTTGAAATTTTAGCAGAGATAGTAATTGATATCTTACTAAAGGTTGAGAATTCGGTTTTGCAAATTGCTCCAGAAAT TAGGTAGATTTTAGAGGTTTAAATATCCCTGAAACTTTACCATAGCAATGTTGCCCTGCTTCATAATTTGTATCATGCTG AAATGTTTCAGGCTCTCTGAATTCTCTAACTCTTAGATTTCAAGTTCAATCTTTGTTAATTGGCAATTGGATAAATCTAT TTGACATAAACTTTTGACTCCAAAATTTCCTAATAAGTCATGACTCTTCAAATTTAGATACCTTGTCATTTGTTCTAAAA ATACTCTAGAAAAATTGGGGGGAATTCTCACCAAACTGAGTTACTTGATAAGAATCAACAAAGCATGAAAAACTTAAAGT TTTTTTATTAGTGTTGTTGCTTGTGACTATGGAAGATGGGGCTCCATAACTAGATTCATGAAAGCTTCAACAATTTCAAT GAATGCCATTTAATTGCCGACTTGAATGATTCTGCCTCTCCCAGCCTCTCTGTGATGTTATCCAAACAGTGACATCATCA TAAATCACATGACGTTCTTTCTCATCTACTTTGTACATCTCCCTATGCAGTCAAAGACATCATTTTTGTAACCAGAAAAT GATTTGTAGAAATCTGGATAGTACAGACATCCAACAAACACTGAGGATGAGGATGAGAAAGGAAGAGAAGAGAGTGAACT AATTGATGTGATATATGATAGAAGAGAGAGGTAGAGAAAAAAAAAAATAGTATCATTACAGTTTCTAACCACTACTCTCT GCAACAAGTTTTTATTTTCATTTTTTGTAGGTGGAGGTTATTAATGATGTATATATCTAGTGAAGATAACTTCAATTGAT TGAACCGAATTTAAGCATCCTCCAACTCAATTTCTGAAATATTTGCTCACTATAAGATTTATTACTTTGTAGCTTAATGA ATAAACTTCATTCTTATATAGTTGTGGTTTTTTTGTTCTTCATATATAGGATCTAGTGTCACCTGAAATAACTGAGGAAC TCACAAGTGGACAATATGAGACAAGGCCTAACATTATATTGGAGATACCTACAATAACTCAAGAGGAAGCAAGAGAAGAT TATTTGAGAATAGACATACCTCCAACTCCATCTCCAAGAAGAGTGATATTTCCCCCTTGTCTAAGTCCTGGTTTTTCCAG AGCCAATGAATCTCCTGGTCCTTCCTCATCGAAAAGTAGATCAACAATTAAAACCTTTCTTCCCAAACTCAGCTTTAAAT TTCTCAACACAAGTTCAGATATTGAAAAAGCTGCATTCCTAGCACTTGAAGGTTCTGCACCAAAAAAACCTTTTCTTTCA AGGACATTATCTCGTACCAAAACTACCACGTCGTCCTTACCTGCAACACCAATTGCTCATTCACATCCAGGGTCTTTACA TGGAGGCAACATGGCTTATCTAGCAACAACTGTTGTGAGTAACTGCAGTTTTTGCAATATGTGACATTGTAATTATCATA GTTGTTTTAACCTAGCCTTGTATTCTTGAAACCAAGTTTTCTGATTTAACTGTATGCATTTATTGTCTATAAGACTGTAA ACTGTTTTATTGGTCGCTGAAGAAACCAGGATTGAGTAACATGGAAACAATATTTTCTATTTTAGATAGTCATTTTGTCC CTAAAACTTAGTCCCTAAAAGATGGAAATAGGCAAAGATAAAATGCAATCAATTTAGTCATTGAAAGATGAAAATCATGA TTAATATAATCCTTGAAAGATGAAAAGTGACCATCCATTTTAGTCCTCGAAGACTAAAATTAAATTTGGTTTCATCTTTC AGGAACTACTTTGCCTATTTCCTTAGTAAGGGACGAAAGTGACGGACTTAAATTATATCCTCCATGAACTATAGTGACTA TTCACTCTCTATTTTATTATGGGGTCCACATACATCCATCTGATGATAATTGTGTAAAATATTAGCTTAAATCATAGAGC TCAATGAACTAAATGGTTTTCTTCAAGAGATCCATCTTTTTAATTCTGGCCAGTCAATGCTTTATCCCTTTCTTCAAGTT ACTTTTAAGTCTGCATCACTTCAGCTTGATAAGGAAAATGCTTTTGTGCTTCTCAAAATCACCATTAGACATTTATCTAT CTTCAGGATAATTTGTTATACACCTACATGATTGTATCTGATATATACTTCTTCCCTCATTTTACAGGAGAAAGGAGTGC AATTACCAATTCATCGTTCCCGGTCAGTTCCTTCATTTACAGAAGAAGGTAATACCACACCTGTAGGCGCAAAGTTTCGT GTAATTCCGACCACGCCACGAATCGATGAGAAAATTGCCACAACAACATCTACCAAATCTCCAACTGATGATGCTGGTAA GAGCTATTTATCATATTTGTTTTATAAAAGATTTGTCAACCTTAGAATCTTTAACAATATTTTACTTGTCCTCACTAAAA TTATATGGATTTGACTCTTCTAAAATTGAAGAGAAATTGAAGAGTCACTTTAGAGGGCAAAGCAAGCAACCACAACCCTT AATTGAAAAACCAATGGTTAAAAGTTAAAGAACATCAGTTTGTTATACATGAATAAGTGTATTACCGCTATCTCAACTGA GTCGATCAAGGGTTGTGATTGCACTTTACCCTCCAAAGCGAGTCCCTCACTTTAGAGGATTCAATCCAAGTCAAATATAT TGTTCTCTCATTCATAGTGGAGTTGCAATATCTTCTCTGGTTTAATTTACATAAACTTATTTTTTAGGATTAAACTGACT TTGGTAATGCTGCTAATTTCCACATATATCATTTATTTATTGGTTTAAACCTCTAGATTAATTCTTTCAATAACCAACAA GTGCATCTGAGTATTGTGGTCAGTTGAAAATGAGGATGGCGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTT GTATGGTTGAACTGGGAGAAGGTGCTAATACTTTTAAATTGGAGTGCAGCTGCAAAGGTGAGCTTTCACTGGCACACCAA GAATGTGCAGTTAAATGGTTTAGGATTAAAGGTAACAGAACATGTGATGTTTGCAAGCAAGAAGTTAAGAACCTACCCGT CACTCTTTTACGAGTTCAAACTGTTCTAGGGAGCAGAGGTCAGCTAGCAGAGACTTCTCAATACAGGCAAGGGCAAATTA TTCTTGTACTTGACTAGTTATTTTGGTTTTGGAAAACTTTCTAGACTTTCTAGCGATGATTTTATGGTTACGAACTTTAG GCCGTATTTCATTGACAACTTACAAGCTTCTGCATAAGCGTTATAAACTCATAATAAAAACTACTGATGATTTGTTATAC TAATAGACTATACATCAGTTTAGTTTGGCATATAAAGGACTTCAAGTTCAAGCTTTTCTGATCCCTTATGCTGACGAATT TGGATTCTGTGTAGTCAAAGAATTCCTAAATTCACAGTCAGAATCTGAGCTGTTGTATCAAAGATCGGACAGCTAAAATC TTAAGCTAATTTCTACCGACCGATCTTCATAAAATATATGAGCCGACCGATCTTGATCAAACAGTGCATATTTCTTGACT TCATGAATGTAGGATTTCTCTGACTGCTGGTAACCCAAATCCTTGTTCTGATACAACATTACTGATACAAAACTTCTACA GGGTTTTGCAGGATGCCCCCATTCTTGTCATTGTCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTAAGT TCAGCTTCTCTTGTAGATAGCATTCCCTTTAGCCATATGAATTTCCAATTTTATCGATGGACAGGTTTCAAAGATGGGAT CTAGTGCTATTGCTATGTCTCTCCCATTTTCTTGTATACTTGGTCTTCTTGCGAGCATGACCGCTACAACAATGGGTTAG GTTTTTTTCTACTTCTGTTCAATGTGTACTTGAATTCCTCCTATGGTATTATACAATTTACATTAATTCCTCCAAAATTT TCTTAGTGAGGAGAAAACATGTTTGGTTTTATGCAACTGCTCAGTTTGGTCTGGTGGCTCTGGCTGCACATCTTTTCTAT TCATTGGTAAGAGATTCTTTTTTGCAACCATAGTTATGGTACATTTTCTGTTTTTTGTATCTTTTCAGCCCCCTTCTCTA TTTACTCGTCTTCCTGTGTGTTTGGTCCCATGCTTGAGAGTCTTATAATCAATTCTAATTGACCAGTATTACTTTTAGAC AGTTATATAAATGCATGACAATCGACTTAGAAAATTGACTTTAGTCGCAAACTCAATTCTGAAGAGAGATTAGAGAGAGT AGTTACTGAGGTGAACTTTATTATTTGTGGGATTTTATGATTGGATTTCGCAACATTACTCTATAGAAATAATTTTTCCC ATAAGTGTATCCAAATAAAAATGACTTCACTTTTAACTCATTTTTACCAAAATCAATTCTGACAACGTTGATCCAAACAC GAACTTCCTCATGAAAATGTACTTAAAAGTAGCTTGCTTGTGGTTTCAAATGTTGGTTTTCTCAATGAATCAGTAAACGA TTGTTCGGAATTTGCATATCAAGATCTGTCTAATATCAAACATTTTAATACATTAATTTGGAATGGCAGGCTCATATGCA GGCTGTTATAGCTATCCTACTAGCTACATTTTCTGGGTTTGGAGCTGTTATGTTTGGAGCTTCTGTTCTTATGGAGATTT TGAAGTGGAGGGAAAGATGGCTTGCTGCCCAGTTGAATCGACAGAGCGGTTTGCAAGAGGCTGTGGTACCGCCCGAGCAA TCATCTGCAGCCACTCATCAAGCTCAGGCTGATCCTCAACATACTGAAAGTAATAGAGGAGTCACCCCTGCCCAAATGAG CTAATAGAACACTTATTCAAGATTTTGCTTGAAAACTGTCCTCATAAACTTTTCTCTAGCTGTAGATATAAGTATATATT GTATATAGTCAAGTTTGAGCACATTGAGCATTTGTGAGTTGACATTAATCGTTTAACCCCTCGAACATGAGACCTATGCT TAAGTTAGACCTCATGCAGTCAATGGTGGAAACAAAAACAAATTCACAATGTAGTCAAGTTTAACATCTGTAGATGGTAA GGAATCTTGTAGTGTGAAATTTCTTTGCAACGGATCTAGTCGAAGGCCTCCATGCATTTCCATAAAGTTGGGACAGAGTT AGACGCTTATAGTGGTTCTAAACATGGAAAAGAAGGGTTTCTCATCTAGACATCATCCTGCATTCTTATTCTAGATATCT AGTAACTAGTTCCTTCTCGATCTTAGCTAAATGGTTGTCTCAGGCCATCCTACGAGACAAAAAAGATGTTGAAGTTAGAA TCAAAAGTGGAGGCTTGGAAGCATCCTGATCTGAATGTGTTTTTTTCTTTTCCTGGTATGTGATGTTGAAGTTGATTAGA GTAAGCGAGCTTGAATTTTTTCGAGTATTTGCGGTGCTGAGATGTATTGCTCTTAGTTAAGGTTTGATTACCATTTGCTT TGTATGTACTATTTGGTTTGGCTTGATGCCTTAACCCAATCTCTCTTGACAAAGAGAAGTATCTTTTTAGTTTTTATGTC AGACAAAATTGATCTTTTTTCCATTTCTAAGGACTCACTCCTTGGACACATGAAGAGAATTCTGAGTCAGAGACTACTGT TTTGATTTATGTGATTGATGTACATATATATCTTTCTATAGATTCCTTGAGGTCTACATAGTCCTGTGTAAGCATGATGC ATTTCTTTGAGAAATAATTTGATTGTCTATTTGGGAAGCCACCAAAGAAGCATCATG
CDS sequence (LotjaGi5g1v0077300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACTGAAGGTGCAAACTTTTCCAAGGATAATAATAACCAAGGCGCTGGCACCATTGAAGATAAAGTTGATATCCA AATTCAGAAGGATCTAGTGTCACCTGAAATAACTGAGGAACTCACAAGTGGACAATATGAGACAAGGCCTAACATTATAT TGGAGATACCTACAATAACTCAAGAGGAAGCAAGAGAAGATTATTTGAGAATAGACATACCTCCAACTCCATCTCCAAGA AGAGTGATATTTCCCCCTTGTCTAAGTCCTGGTTTTTCCAGAGCCAATGAATCTCCTGGTCCTTCCTCATCGAAAAGTAG ATCAACAATTAAAACCTTTCTTCCCAAACTCAGCTTTAAATTTCTCAACACAAGTTCAGATATTGAAAAAGCTGCATTCC TAGCACTTGAAGGTTCTGCACCAAAAAAACCTTTTCTTTCAAGGACATTATCTCGTACCAAAACTACCACGTCGTCCTTA CCTGCAACACCAATTGCTCATTCACATCCAGGGTCTTTACATGGAGGCAACATGGCTTATCTAGCAACAACTGTTGAGAA AGGAGTGCAATTACCAATTCATCGTTCCCGGTCAGTTCCTTCATTTACAGAAGAAGGTAATACCACACCTGTAGGCGCAA AGTTTCGTGTAATTCCGACCACGCCACGAATCGATGAGAAAATTGCCACAACAACATCTACCAAATCTCCAACTGATGAT GCTGTTGAAAATGAGGATGGCGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAACTGGGAGA AGGTGCTAATACTTTTAAATTGGAGTGCAGCTGCAAAGGTGAGCTTTCACTGGCACACCAAGAATGTGCAGTTAAATGGT TTAGGATTAAAGGTAACAGAACATGTGATGTTTGCAAGCAAGAAGTTAAGAACCTACCCGTCACTCTTTTACGAGTTCAA ACTGTTCTAGGGAGCAGAGGTCAGCTAGCAGAGACTTCTCAATACAGGGTTTTGCAGGATGCCCCCATTCTTGTCATTGT CAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCAAAGATGGGATCTAGTGCTATTGCTATGTCTCTCC CATTTTCTTGTATACTTGGTCTTCTTGCGAGCATGACCGCTACAACAATGGTGAGGAGAAAACATGTTTGGTTTTATGCA ACTGCTCAGTTTGGTCTGGTGGCTCTGGCTGCACATCTTTTCTATTCATTGGCTCATATGCAGGCTGTTATAGCTATCCT ACTAGCTACATTTTCTGGGTTTGGAGCTGTTATGTTTGGAGCTTCTGTTCTTATGGAGATTTTGAAGTGGAGGGAAAGAT GGCTTGCTGCCCAGTTGAATCGACAGAGCGGTTTGCAAGAGGCTGTGGTACCGCCCGAGCAATCATCTGCAGCCACTCAT CAAGCTCAGGCTGATCCTCAACATACTGAAAGTAATAGAGGAGTCACCCCTGCCCAAATGAGCTAA
Protein sequence (LotjaGi5g1v0077300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATEGANFSKDNNNQGAGTIEDKVDIQIQKDLVSPEITEELTSGQYETRPNIILEIPTITQEEAREDYLRIDIPPTPSPR RVIFPPCLSPGFSRANESPGPSSSKSRSTIKTFLPKLSFKFLNTSSDIEKAAFLALEGSAPKKPFLSRTLSRTKTTTSSL PATPIAHSHPGSLHGGNMAYLATTVEKGVQLPIHRSRSVPSFTEEGNTTPVGAKFRVIPTTPRIDEKIATTTSTKSPTDD AVENEDGGEDIPEEEAVCRICMVELGEGANTFKLECSCKGELSLAHQECAVKWFRIKGNRTCDVCKQEVKNLPVTLLRVQ TVLGSRGQLAETSQYRVLQDAPILVIVNMLAYFCFLEQLLVSKMGSSAIAMSLPFSCILGLLASMTATTMVRRKHVWFYA TAQFGLVALAAHLFYSLAHMQAVIAILLATFSGFGAVMFGASVLMEILKWRERWLAAQLNRQSGLQEAVVPPEQSSAATH QAQADPQHTESNRGVTPAQMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 342 | 342 | - | – | |
| PANTHER | 4 | 483 | 480 | 3.5E-171 | – | |
| PANTHER | 4 | 483 | 480 | 3.5E-171 | – | |
| MobiDBLite | 88 | 107 | 20 | - | – | |
| MobiDBLite | 150 | 165 | 16 | - | – | |
| MobiDBLite | 150 | 171 | 22 | - | – | |
| MobiDBLite | 230 | 249 | 20 | - | – | |
| Gene3D | 243 | 315 | 73 | 2.9E-15 | ||
| ProSiteProfiles | 250 | 312 | 63 | 18.929 | ||
| SUPERFAMILY | 254 | 309 | 56 | 3.53E-13 | – | |
| SMART | 257 | 306 | 50 | 7.0E-18 | ||
| Pfam | 258 | 305 | 48 | 5.8E-11 | ||
| CDD | 258 | 306 | 49 | 3.07716E-15 | – | |
| Phobius | 343 | 361 | 19 | - | – | |
| Phobius | 362 | 366 | 5 | - | – | |
| CDD | 364 | 446 | 83 | 0.00140398 | – | |
| TMHMM | 364 | 383 | 20 | - | – | |
| Phobius | 367 | 384 | 18 | - | – | |
| Phobius | 385 | 395 | 11 | - | – | |
| TMHMM | 396 | 418 | 23 | - | – | |
| Phobius | 396 | 415 | 20 | - | – | |
| Phobius | 416 | 420 | 5 | - | – | |
| Phobius | 421 | 444 | 24 | - | – | |
| TMHMM | 422 | 444 | 23 | - | – | |
| Phobius | 445 | 501 | 57 | - | – | |
| MobiDBLite | 469 | 501 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0077300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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