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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0080000 |
| Transcript ID | LotjaGi5g1v0080000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ9|A0PBZ9_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi5g1v0080000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:13026754..13031738) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTACATACCTTCGTGCATCGATACCACCCCTTATGCTCACCTAACCAACACACCAACGCACGAGATTCGAATTGGCC CCAACTCATTCACCATTATATAACCCCCTTCTCCCTCTCTCTCATTCCTCAGGAAAAATATTAATCATCACCAATACCAT TTCCTCACCCACCACCACCACAAACACCACCAAACACAAACACAGCACCATTGTTATTAATATTATTATCATTTCTTTTG TTACAAAAACAACATGGCTGCTGCAACAACAATCATTACCAATGGCAACGGCCACGGCCACCACGATGACGCCGCCTTTT GTGTCAACAACGGTGTTGGACTAGGAGTAGGACCTACTACTCCTCATCATGACCCTCTCAACTGGGGGGCTGCGGCGGAG GCGATGAAGGGTAGCCACCTTGATGAGGTGAAGCGTATGGTGGAGGAGTACCGGAAGCCGGTGGTCCGTCTCGGTGGTGA GACTTTGACGATCGCTCAGGTGGCTGCTGTGGCGGCTCATGACCAGGGTGCTGTGACGGTGGAGCTCTCGGAGTCGTCGA GGGCTGGGGTGGAGGCTAGTAGGAACTGGGTGAGGGATAGTATGAATAAAGGGACTGATAGCTATGGTGTCACCACCGGG TTTGGTGCCACCTCTCACCGCCGGACTAAGCAGGGTGGTGCCTTGCAGAAGGAGCTTATTAGGTAAAATTGATTAACTTC AAACGTAGTTATACTTATATCTGTCTCTGTTTATGTCTCCCCACTTTGCTAACATGGTTTTTGGCACTTCCCCACGTTCT TACGTGCTGCACGTGCCTCTTATTCTTGAAAAAAACTTATTTATATGCATCCCCTTAAACCGTAGACACTTAACATAGTG AATAATAAAAATCATAGATGTATAGATGTGATATATGATGAATATAATTAAAAAAATAGATAGAAAGACAAATTGAGTGT TTGTTAAGAGAAAGTGTCTAAGTATGATTCATTTATGTTTATACTATTACCATTAACATCTGAAATATTTTTGCACTAAA TTAAGTTGAAATTAAGATGCATAGAAAGTTTGTATTTACTTTGATAGTTTTAAGTAATTAATTAAGTAGATTAATTTTTT TTACTCGTATCTTTTAGGACATTTATTAAAATGATTCACCAACTAAATAATTTTGTTAAGAATATTTTATTTTTGAATAT TTAGTATAATTTATTAAAAACCTTTAATTACCTAAGACATAAATGTTTAATACTCTTAATTTTTTAAATAAATAGTTTTT ATTTTAATTTTCTTTAATGGTATTTTAGAGCCGATCATTTACCTAAAAGTATTGTTTCATTTTTGAGTCATGATTAATAA GATTGTGTCATAACAATTAAAGTCTAGTCATAAAAAATTATAAATATTATATTCATATATTTTTTAATTGACATGTTACA ATCTTATTGGTTGGAATATCATCAAAATGCATACTTCAACACATGAAGATGGAAGATCTCAATCCCTTAAATGAATACCA CCTTATGAAGTTTTACCCAACCGAATTATTATTATTTCATAGATTCTCATAATTGAGGGGGGTAAAGTGCATACCTTGGA AGCTAGCTTGCCTTCTTTAGTAGTAACTTTTTTTAACTGCTTTAGTTTTCTTGGACTGGAAAATGGAGTAAATAACAATA TCAAATCAAATATTCTACGCACTCAAAAAATGACATCTTTTACCTCGTATCTAAGTAATTAAAACACTACTTACATTAAG AATTTTTTTCAGTAAAATCTCGTTTTACTAATGATAGAAACTTTGAAAACTACTACTAATAATTTATCCAAACAAAAAGA GTGTAAAAATTATTTTTAAAAAGGTTTTATTTTTGAGTATTTGTAAAATAAATACGCGGATTTGATTGTTGGTTGGGTCT TGGGTGGTTAAAAAACACGCGTTGGCCCCAAAAGACAAGAACCAATAAATTTCTTTCTTATGGGACGTGACTCACCCACA TGACCATATCTGAACTCGTGGTCCAGGGTACTGAGTTGAAACGGTCGAGTCACGAGTTAACTCATTAAAAGTCTTCGGTT TTGCACGTGATCTGGGGGTTGGTTGATGAAATGCTGACTGCCTAACCTTTCCCTGCCAAACTCGCCATATTTGACTCAGT GCTCTTTCTAATTGCATTTTTTTTCTTTTTTAAGCATTGACAGCCTGCATCAATGTCCTTTTCTATCACAATTAATTTAA TCCTTCTTATTTTTCACATAAATGGAAAAATATAGACAAAATTTAATTCGTTTTCTAACTATATTATTTGTCTATAGTTA TGACTTATGAGTAGTAATTATAAACTTTTACTCATGGTTCTTTTTCTTTGTATTTTTCAGGTTCTTGAATGCTGGAATAT TTGGCAATGGAACAGAATCCAATTGCACACTACCACACACAGCAACAAGAGCAGCCATGCTTGTTAGAATCAATACTCTT CTTCAAGGCTACTCAGGTATCCGGTTTGAGATTTTGGAAGCCATAACCAAGCTCATAAACAGCAACGTTGCTCCATGCTT GCCTCTTCGCGGCACAATCACAGCTTCCGGTGATCTTGTTCCACTTTCATACATTGCCGGTTTGCTAACCGGCCGACCGA ACTCCAAGGCTGTCGGCCCCTCCGGCGAGATTCTTACTGCCAAGGAAGCCTTTGAACTGGCCAACATTGGTCATGATTTC TTTGAATTGGAGCCCAAGGAAGGCCTTGCACTTGTTAACGGTACCGCGGTTGGTTCTGGCTTGGCTGCTATTGTTCTCTT TGAGGCCAACATACTTGCTGTCTTGTCTGAGCTTATTTCAGCGATTTTCGCTGAAGTTATGCTCGGCAAACCGGAGTTTA CCGACCATTTGACTCATAAGTTAAAGCACCACCCGGGGCAAATTGAGGCTGCAGCTATCATGGAACACATTTTGGATGGC AGCTCTTACATAAAAGCAGCTAAGAAGTTGCATGAGGTGGATCCTTTGCAAAAGCCTAAACAAGATAGGTATGCGCTTAG AACTTCACCCCAATGGCTTGGTCCTCTTATTGAAGTGATTCGATTCTCAACCAAGTCCATTGAGAGAGAGTTGAACTCAG TCAACGACAACCCTTTGATTGATGTCTCTAGAAACAAGGCCTTGCATGGTGGTAACTTTCAAGGAACCCCCATTGGAGTT TCAATGGACAACACACGTTTGGCTCTTGCATCTATTGGTAAACTCCTGTTTGCTCAATTCTCTGAGCTTGTTAATGATTT TTACAACAATGGGTTGCCTTCAAATCTTTATGGTAGTAGAAACCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTG CCATGGCGTCTTATTGCTCTGAACTCCAATATCTTGCAAACCCGGTGACAACCCATGTTCAGAGCGCTGAGCAGCATAAC CAAGATGTGAACTCATTGGGTTTGATTTCGTCTAGGAAAACAAATGAGGCTATTGAGATCCTCAAGCTCATGTCGTCCAC GTTCTTGGTCGCGCTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAGCACACTGTCAAGAACACTGTTA ACCAAGTTGCTAAGAGGACACTCACAACTGGTGTCAATGGGGAGCTTCATCCATCAAGGTTCTGTGAGAAAGATTTGCTG ACAGTTGTTGATAGGGAGGATGTTTTTGCCTACATTGATGACCCTTGCAGCGGCACATACCCATTGATGCAGAAACTGAG ACAATCACTAGTGGATCATGCATTGGAAAATGCAGATGCTGAGAAGAACGTGAACACATCCATCTTTCAAAAGATTGCTA TCTTTGAGGATGAATTGAAGGCTATCTTGCCTAAGGAGGTTGAAAGTGCCAGGGTTGCATATGACAATGGCGAAAGCGCG ATCCCAAACAAGATCAAGGAATGCAGGTCTTACCCGTTGTACAAGTTTGTGAGAGAAGAGTTGGGAACTGGGTTGCTGAC CGGAGAAAAGGTTAAGTCACCAGGGGAGGACTTTGACAAACTGTTCACAGCAATGTGCCAAGGTAAAATCATTGATCCTA TCTTGGAATGCCTTGGGGAATGGAATGGTGCTCCTCTTCCAATTTGTTAGAACAGTTTGTTTGTTTGAGAAATTGTTTCT TTGTTTCTATATATGTATTTGTGTTGATGAGTATTTGATTTGTCTGTAAGCCTCTGTGGGCAAATCAATCTAGAAGACAT CCTTTAAGTTCTCCTTTATGTTAAGGAGTTTGTTGTTTTGCCATAGCTTTTACTGCAAATATGATACATGGCCTTTTATG TAAATGGTGTTTTATCATGAATAATAATTGTTAGTTTTTTTACATTAGCGTTCTCTGTTCAACTTTGAAAGAGGTTTTTA CACTTTTTGTGATCTTGCACTCTGTTGTTGTTAATACAAAAATAATTAGTGTCAGTTGCAAGGGACCATTTAAAGTTCAG CTATATTTCAGACAAGTTATTATAGAAAAAACGCAGACAATAAGTGGAAGGAAGATGTTGCAAAATGTTCCTCTCATGGC AAAAATGACTGGCTTCAAGGGGAGAACAAACTATGAGCTGGATTAATGCAAGGAAAACATATAACAAATGATAACATTCT TTCCATGGCTATTTCTAGGGGTTCAATTGAGTATCAATCCATCCAGAAAAGTGATATGGCGTCCTTCTAAGTTGATGCCC GGTTGGGTCATGAGAAACTCGGTGTAGTAGACTTTATTCAAGTTCAGGATGTCTCCTTGAGAGTCTGATGTGAGGGAAGT TGATTCTTAGAAGCTGGACATTTTGTATAATGGGCTTCCTGCATATATTTCTGAAGCAATTCTGACTTAGAATGTGGTGT TGAACCAACATTTAGGCTATGTCTGGACAGTCTGGACAGGGGACAAGTCTGAGATTTATTCAGCAAAGGCCGGGTACAGA TGGCTGATTCGAGGCCGGGTACGGG
CDS sequence (LotjaGi5g1v0080000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTGCAACAACAATCATTACCAATGGCAACGGCCACGGCCACCACGATGACGCCGCCTTTTGTGTCAACAACGG TGTTGGACTAGGAGTAGGACCTACTACTCCTCATCATGACCCTCTCAACTGGGGGGCTGCGGCGGAGGCGATGAAGGGTA GCCACCTTGATGAGGTGAAGCGTATGGTGGAGGAGTACCGGAAGCCGGTGGTCCGTCTCGGTGGTGAGACTTTGACGATC GCTCAGGTGGCTGCTGTGGCGGCTCATGACCAGGGTGCTGTGACGGTGGAGCTCTCGGAGTCGTCGAGGGCTGGGGTGGA GGCTAGTAGGAACTGGGTGAGGGATAGTATGAATAAAGGGACTGATAGCTATGGTGTCACCACCGGGTTTGGTGCCACCT CTCACCGCCGGACTAAGCAGGGTGGTGCCTTGCAGAAGGAGCTTATTAGGTTCTTGAATGCTGGAATATTTGGCAATGGA ACAGAATCCAATTGCACACTACCACACACAGCAACAAGAGCAGCCATGCTTGTTAGAATCAATACTCTTCTTCAAGGCTA CTCAGGTATCCGGTTTGAGATTTTGGAAGCCATAACCAAGCTCATAAACAGCAACGTTGCTCCATGCTTGCCTCTTCGCG GCACAATCACAGCTTCCGGTGATCTTGTTCCACTTTCATACATTGCCGGTTTGCTAACCGGCCGACCGAACTCCAAGGCT GTCGGCCCCTCCGGCGAGATTCTTACTGCCAAGGAAGCCTTTGAACTGGCCAACATTGGTCATGATTTCTTTGAATTGGA GCCCAAGGAAGGCCTTGCACTTGTTAACGGTACCGCGGTTGGTTCTGGCTTGGCTGCTATTGTTCTCTTTGAGGCCAACA TACTTGCTGTCTTGTCTGAGCTTATTTCAGCGATTTTCGCTGAAGTTATGCTCGGCAAACCGGAGTTTACCGACCATTTG ACTCATAAGTTAAAGCACCACCCGGGGCAAATTGAGGCTGCAGCTATCATGGAACACATTTTGGATGGCAGCTCTTACAT AAAAGCAGCTAAGAAGTTGCATGAGGTGGATCCTTTGCAAAAGCCTAAACAAGATAGGTATGCGCTTAGAACTTCACCCC AATGGCTTGGTCCTCTTATTGAAGTGATTCGATTCTCAACCAAGTCCATTGAGAGAGAGTTGAACTCAGTCAACGACAAC CCTTTGATTGATGTCTCTAGAAACAAGGCCTTGCATGGTGGTAACTTTCAAGGAACCCCCATTGGAGTTTCAATGGACAA CACACGTTTGGCTCTTGCATCTATTGGTAAACTCCTGTTTGCTCAATTCTCTGAGCTTGTTAATGATTTTTACAACAATG GGTTGCCTTCAAATCTTTATGGTAGTAGAAACCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCGTCT TATTGCTCTGAACTCCAATATCTTGCAAACCCGGTGACAACCCATGTTCAGAGCGCTGAGCAGCATAACCAAGATGTGAA CTCATTGGGTTTGATTTCGTCTAGGAAAACAAATGAGGCTATTGAGATCCTCAAGCTCATGTCGTCCACGTTCTTGGTCG CGCTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAGCACACTGTCAAGAACACTGTTAACCAAGTTGCT AAGAGGACACTCACAACTGGTGTCAATGGGGAGCTTCATCCATCAAGGTTCTGTGAGAAAGATTTGCTGACAGTTGTTGA TAGGGAGGATGTTTTTGCCTACATTGATGACCCTTGCAGCGGCACATACCCATTGATGCAGAAACTGAGACAATCACTAG TGGATCATGCATTGGAAAATGCAGATGCTGAGAAGAACGTGAACACATCCATCTTTCAAAAGATTGCTATCTTTGAGGAT GAATTGAAGGCTATCTTGCCTAAGGAGGTTGAAAGTGCCAGGGTTGCATATGACAATGGCGAAAGCGCGATCCCAAACAA GATCAAGGAATGCAGGTCTTACCCGTTGTACAAGTTTGTGAGAGAAGAGTTGGGAACTGGGTTGCTGACCGGAGAAAAGG TTAAGTCACCAGGGGAGGACTTTGACAAACTGTTCACAGCAATGTGCCAAGGTAAAATCATTGATCCTATCTTGGAATGC CTTGGGGAATGGAATGGTGCTCCTCTTCCAATTTGTTAG
Protein sequence (LotjaGi5g1v0080000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAATTIITNGNGHGHHDDAAFCVNNGVGLGVGPTTPHHDPLNWGAAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTI AQVAAVAAHDQGAVTVELSESSRAGVEASRNWVRDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNG TESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNVAPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA VGPSGEILTAKEAFELANIGHDFFELEPKEGLALVNGTAVGSGLAAIVLFEANILAVLSELISAIFAEVMLGKPEFTDHL THKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIERELNSVNDN PLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLYGSRNPSLDYGFKGAEIAMAS YCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVNQVA KRTLTTGVNGELHPSRFCEKDLLTVVDREDVFAYIDDPCSGTYPLMQKLRQSLVDHALENADAEKNVNTSIFQKIAIFED ELKAILPKEVESARVAYDNGESAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEDFDKLFTAMCQGKIIDPILEC LGEWNGAPLPIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 732 | 713 | 0.0 | – | |
| PANTHER | 20 | 732 | 713 | 0.0 | ||
| Gene3D | 39 | 278 | 240 | 5.3E-96 | ||
| SUPERFAMILY | 40 | 732 | 693 | 3.06E-259 | ||
| TIGRFAM | 40 | 721 | 682 | 0.0 | ||
| CDD | 76 | 542 | 467 | 0.0 | ||
| Pfam | 78 | 554 | 477 | 4.4E-151 | ||
| ProSitePatterns | 214 | 230 | 17 | - | ||
| Gene3D | 279 | 721 | 443 | 4.3E-216 | – | |
| Gene3D | 545 | 659 | 115 | 4.3E-216 | ||
| Coils | 606 | 626 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | L-phenylalanine catabolic process | The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. | ||
| Molecular function | Ammonia-lyase activity | Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate. |
Expression pattern of LotjaGi5g1v0080000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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