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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0080100 |
| Transcript ID | LotjaGi5g1v0080100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Isopropylmalate dehydrogenase; TAIR: AT5G03290.1 isocitrate dehydrogenase V; Swiss-Prot: sp|Q945K7|IDH5_ARATH Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial; TrEMBL-Plants: tr|I3SWL7|I3SWL7_LOTJA Isocitrate dehydrogenase [NAD] subunit, mitochondrial; Found in the gene: LotjaGi5g1v0080100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:13040844..13045581) extracted from Lotus japonicus Gifu genome v1.2.
TTTAAGTAATGCTTGTTATTCCGCGTAGAACTTTCCACTTTAAACATTTTTGAGCTAGAAAAACAAATATAATAAGAATA ATAATTGGGTTCTTGTTCATTCTGACTCTTCTTCACGAATCAGATACGAAAAAGTGAGTGAGCGTTGTCAACCATGGCTT CTCATCTCCTCAGACGAACCCTCGGTAGCCGCTACCTCGCTAACTCTCTCCGGGGTTTCTCCTCCGCTTCCACTCCGATC CGCGCCACTCTCTTCCCCGGCGACGGTATTGGTCCCGAGATCGCCGAATCCGTCAAACAGGTTCCTCTCTCGCACTCTTC TCCTTCTCTGATGAAATGATCCCTTTGTTTTTCACTTTCAATTACCTAATTTCCCAAAAAATCATGCATCATATCAAACT GATCGTTTTAGTGGAATTCATTTTACCCTAAAATTGTCTCCATGATTTGTCAAGTTTTTTGCCGCTCTCTGATTCTGATT GCTGCTGCACGAAAGCTTGCAATTTGCAAATGGGGCATACCTAGTTTAATTCAAGTTGAAAGGAGAAAAAATTGAGACTT ATGGTTTGGCACATAATTGCATGATTGATGTCATTTTTTTTAATCTGGGATGTGTGCACTCTTTTGAGTTGTAGTTGGCT TCAGTTTATGCATTCTCAGTATCAATAGAAAGGTGGTGGTTTTATTATGTTGGTACTTGATAGAGTTATGGAGATAATGC TATGAGTGGAGTTGCTGTGTCTAATGATTATTACTTCAGCATAGCTATGGTTTGTGTAATGTTTTTGCAAGTTCATAAAC TTAGAATGAAGGTGGGATGTTTGTCAATGACAAAAGCTTTACATGTTTGATATGGCTTTTGTTTCCATATCTAGTGTAGG TTTAACATGACTAACTTTTTCATTGAAGCTTACAGATTTTCTATTGAAAAGATCAAGTTTCATCTTTCTTATGAATTATG ATTTTTGTTTTGTTTATTCTTCAATAATCTAATCTGTACTTTAAATAGCTCTTCTATGATTTACTATGATGAAGCACAGA CAAGACACAGACACAATGACACCCCAATTTTGGAGATTGTTGGAAACAGACATGGCACACACACACATAATAGAAAATAT AAGGAAACAGAATTTTAATTCATACTATCATCATATGTATAAGCTTCAAGATTTTCAATATCTTGGTATATGTTATATGT GTCAATATTTGCTCCTTTGTATGCCCCTACCAAAACACATGGAGCATCATGTGTCAATACTTTCTATTCCTGGGGTTCTA CTATTTTCCACTTTCTTGTATTATGGGTGTATTGGTTTGCTTTACTTCTCATTTGCCATGGCGGTGGAGTCTGTTTTGCT TTCTAGTCATTTCCTTTGAGTTGTTGCTGAAAGTGTTCACTGATTAATACTTGCTATGATTTATACTTCCTCTTATCTCT TGCTTTGTTTGTTTTTTGTAATGTATATCTGTATACTCATAAACATATTTTCTTGTAATGTTTAGTTAAATTTAAAGCTC TGTCAATTAATAATATTGAAATAATCAGATATTCCTAGCTGCTGAAGTGCCAATTGAATGGGAAGAGCACTATGTAGGGA CCGAAATTGATCCTCGAACTCAGAGCTTTCTGACATGGGAAAGTTTGGAATCAGTTAGGCGTAATAAGGTTGGCTTGAAA GGACCAATGGCCACCCCTATTGGAAAAGGGCATCGTTCATTAAACCTTACTCTAAGAAAAGAACTTAATTTATATGCCAA TGTTCGGCCGTGCTACAGCCTTCCTGGCTACAAAACTCGATATGATGATGTGGATCTCATCACAATCCGTGAAAATACGG AAGGAGAGTACAGTGGACTTGAACATCAGGTAAATTTCACAACAGTTGATGTTACATGCTTTAATCCCTCATCTGATTAA TATAATTTAGTTAGCATTTTTGGGTTACAGGTTGTGAGAGGTGTAGTGGAAAGTCTTAAAATCATCACACGTCAAGCAAG TTTAAGGGTGGCTGAGTATGCTTTTCACTATGCCAAGGCACATGGAAGAGAGAGGGTGTCTGCCATACACAAAGCCAACA TTATGCAAAAGACTGATGGTCTTTTCCTCAAGGTCCACTAATACATGCAAATGCCTATAAAATTTTGGGCTCAAATTTTC TTCATGAATTCTAACATTTACTGTTTATTTTGGACTACTTTTAGTGTTGCCGTGAGGTTGCAGAAAAATATCCAGAGATT ACCTATGAGGAAGTTGTCATTGACAATTGTTGCATGATGGTAATATTGTTGACCTGGATGTAGGACACAGCTGCATTTGG AAATTCTTTTTTGACTATTAGAAAATGATTGACACTGATTAATTTTCGAACCATCGACAGCTTGTGAAGAATCCTGCACT TTTTGATGTATTGGTGATGCCTAACCTTTATGGTGATATAATAAGCGACCTTTGTGCTGGCTTGATTGGAGGATTGGGGT TGACACCGAGGTTTGAACTTTATTTTTGTCTAAGAAATATAGAGATATCACAATTATATCATCTGACATCATTTTATGTC TTTTGCAGCTGCAACATTGGGGAGGGAGGTATTGCACTTGCTGAGGCTGTGCATGGTTCAGCTCCTGATATTGCCGGAAA GGTGAGACTTCAGAAACCATATATTGTCTGTCCTAAACCTTTTTGCTTTGTTGTCATAAAATATAATTTTTTTTTAAGTG CTTCATACTTGTGCACGATTTGCCCTTCTTTAGGAATTTGGTAAAAGTAACAGGGAAAGCTTTTCATACCATCCTAATTC TGGGGGTAAATAGGCTCCTTATGGGCTTTGTAGTCTATTCTCACTCTTATTCCTATTCAGAGTTGTTAATAGATTAATAT TGGGAACAGTATCACACAATTACTGCCTACTTTAAATAAGTAGTTTCATTTTTGTGTCTAAGGTCTAACATCTATGAACA TTTTAAGTGCTAGTAATACACTCCATGTTATTTGTTTATTTTTCAAAAAAGTGCATTTGCCTCACTTTTAAAAAATGTGA TGTCTTTTTAAAAAATAAACCAATGACATGGATTGTGGCGAAGAGTGTTGCTAGCATTTCTTTTTTAGATATAGATATTA TGTAGATACTAAAGACCTCCAAAATATATTAAATTCTGTATCTAAAATCTTATTGAGAATGAAAAAAGTGTTCCTAAAAT ATGGAGCTTATTTGACTTGTGGAAGAAAACTACAAGAGTTGGAGCTGTGACAAAATGTGGGGAGGTATTAGTTATAACTT ATAGGTTCGACACTTCTGCATTTGTTTAAAAAAATTCAGGGATTCAATCATAAGTAAGCCATCGGGATATGCATAGCACT ATTTATCTATGTAATAATTCTGTAGCAGTTCCTTGTTGGTTCCTGAAAGAAATAAAAAGTTCTAGGGCAATAAAAACATT TTAGGCGCCCAATTAGTTAACCATTTTTCTTGACAAAGTGAGTTTCTCAGAAGGTCCTTTCAAGGAACAAGGCTACCTAT TTGAGTTGCCCCTTAACGGAAAATAATGTGGATGTTCCCTTTCCTTTTGAAAATAACCCCTTACATTATTATATTTAGAG CTCTATTTAGAGGGTATAGAAGGATAGTAGGGCTGGCCTTGTGACTTAGAATCATCCTGTCTTATGGGAGTGAGTAAGGT TGCGTACATGGGCAGCCAGGGTCACCCTTTTGCTTGTTAGTGCTATATTTCTGTTGCTGACCCAATTTTTCTGTGGATTT GTGTAGAACTTGGCAAATCCAACTGCCTTGCTGCTGAGTGGTGTTACGATGTTGCGGCATTTAGATCTCCATGACAAAGC AGACCGGATTCAAAATGCCATCCTCAACACAATTGCCGAAGGAAAGTACCGAACTGCTGATCTTGGTGGCAAGTCAAAGA CATCTGAATTTACACAAGCAATTATTGATCATCTTTAAATTTTGCTTTGAATTCAGCAAGAAATTGTTGGTTATGATTTT GTTTCAGTCAATTTCCTTTTATTTCCCCAATTTTTACAGAGGAGTAGAATTACCTCAGCTTACTACGTGTGTGGGCAAGC ATCCAAATATTCGCTGCCCAATGCAGTTTTATGGCATTGATAGAGCCCCCTTCAAAATGCACATTGATTGTGATTGATAA TCCTTTGTAGTCAATTTCAGTATTCTTTTTTCACTAATATAGCTAAATAAAAGTACTAGATGATGCTTCCTTCCTTCATG TAAAGCACTTATTTACTTGTGCAGGCTGCTTGCTTTAATTTTCTGAAAATTCAAATTGATCTTCATTAGGACATGTATGT GTTCTTTAAGAGATGAAGTTTTGGGCAATTTGCGTTAATTCAAACATGGGGTAGTGGTTAGCTTTTTTTCATTAGGACTT CCTGTGTTCCTTCCTTCATGGTAATATAATCCTTGCACACAATACCTATACTAGAGAGATAAATGTCCATGTATGTGAGG TTTAGAATCAGTTTTTTCAATATTTAGGGTGAGAATTTGTCTACAACTTGGTGCATACTTGAGTTCCACCTCGCATGTGA ATATTCCATTCTGCATTGTATCATGAATAACATCAGACTTAAGACAGCACTGGTTGTTAAGGATAGCTGTGATTTGAGCT GTAAGCATAAGTCCTAGTCAAGTTTGATGAAATCAAATTTAATACATAAATAATACACAGATGAGTCCGGAGATGAATAG ATGGTGGCCAAGCACTCA
CDS sequence (LotjaGi5g1v0080100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTCATCTCCTCAGACGAACCCTCGGTAGCCGCTACCTCGCTAACTCTCTCCGGGGTTTCTCCTCCGCTTCCAC TCCGATCCGCGCCACTCTCTTCCCCGGCGACGGTATTGGTCCCGAGATCGCCGAATCCGTCAAACAGATATTCCTAGCTG CTGAAGTGCCAATTGAATGGGAAGAGCACTATGTAGGGACCGAAATTGATCCTCGAACTCAGAGCTTTCTGACATGGGAA AGTTTGGAATCAGTTAGGCGTAATAAGGTTGGCTTGAAAGGACCAATGGCCACCCCTATTGGAAAAGGGCATCGTTCATT AAACCTTACTCTAAGAAAAGAACTTAATTTATATGCCAATGTTCGGCCGTGCTACAGCCTTCCTGGCTACAAAACTCGAT ATGATGATGTGGATCTCATCACAATCCGTGAAAATACGGAAGGAGAGTACAGTGGACTTGAACATCAGGTTGTGAGAGGT GTAGTGGAAAGTCTTAAAATCATCACACGTCAAGCAAGTTTAAGGGTGGCTGAGTATGCTTTTCACTATGCCAAGGCACA TGGAAGAGAGAGGGTGTCTGCCATACACAAAGCCAACATTATGCAAAAGACTGATGGTCTTTTCCTCAAGTGTTGCCGTG AGGTTGCAGAAAAATATCCAGAGATTACCTATGAGGAAGTTGTCATTGACAATTGTTGCATGATGCTTGTGAAGAATCCT GCACTTTTTGATGTATTGGTGATGCCTAACCTTTATGGTGATATAATAAGCGACCTTTGTGCTGGCTTGATTGGAGGATT GGGGTTGACACCGAGCTGCAACATTGGGGAGGGAGGTATTGCACTTGCTGAGGCTGTGCATGGTTCAGCTCCTGATATTG CCGGAAAGAACTTGGCAAATCCAACTGCCTTGCTGCTGAGTGGTGTTACGATGTTGCGGCATTTAGATCTCCATGACAAA GCAGACCGGATTCAAAATGCCATCCTCAACACAATTGCCGAAGGAAAGTACCGAACTGCTGATCTTGGTGGCAAGTCAAA GACATCTGAATTTACACAAGCAATTATTGATCATCTTTAA
Protein sequence (LotjaGi5g1v0080100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASHLLRRTLGSRYLANSLRGFSSASTPIRATLFPGDGIGPEIAESVKQIFLAAEVPIEWEEHYVGTEIDPRTQSFLTWE SLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVRG VVESLKIITRQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNP ALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSGVTMLRHLDLHDK ADRIQNAILNTIAEGKYRTADLGGKSKTSEFTQAIIDHL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 359 | 348 | 2.6E-211 | – | |
| PANTHER | 12 | 359 | 348 | 2.6E-211 | – | |
| Gene3D | 15 | 359 | 345 | 7.9E-142 | – | |
| SUPERFAMILY | 27 | 359 | 333 | 4.99E-126 | – | |
| TIGRFAM | 30 | 359 | 330 | 1.9E-146 | ||
| SMART | 30 | 355 | 326 | 2.6E-178 | ||
| Pfam | 32 | 355 | 324 | 2.3E-105 | ||
| ProSitePatterns | 250 | 269 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Isocitrate dehydrogenase (NAD+) activity | Catalysis of the reaction: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH + H+. | ||
| Biological process | Tricarboxylic acid cycle | A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. | ||
| Molecular function | NAD binding | Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0080100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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