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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0084200 |
| Transcript ID | LotjaGi5g1v0084200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT2G39210.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|A0A151RH71|A0A151RH71_CAJCA Putative transporter MCH1; Found in the gene: LotjaGi5g1v0084200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:14417098..14419363) extracted from Lotus japonicus Gifu genome v1.2.
TTGAAAAAAATGATGTTGCTAACATTTTTATAGCTTATATATACCCCCTATGCTCAATTGCCTCCCCATTCAACAAAGGG TGTTTAATCTTTAGACGTTAGGCAACTCTCTCTGGCTTATAAAAAAAAGGCAACTCTCTCTGTCTCTTCACCCTATAGAT CTACCTCAATTTTCACAACCTTAATTTCCTCTAAACATGTTGAAAAGGATGAAGAATTTCAGTTTCCACGTTCTCACCGG AAGCTGGTTCTTGGTCTTTGCCTCTATTCTAATCATGGCCTTTTCAGGAACAACCTACTTGTTTGGTCTCTACTCAAGCC AAGTGAAACACTCTTTGGGTTATGACCAAACCACTCTGAACCTCATCAGCTTCTTCAAAGATATAGGCACCAACGTTGGA ATCGTCTCGGGGCTAATCAGTCAATTCACCTCTCCATGGGTGGTCCTCGCGATTGGAGCCACCATGAACCTCGTCGGATA CTTCATGGTATGGCTCTCCGTCACGGGACACGTCGTGAAGCCACAAGTGTGGCAAATGTGTCTCTACTTTTACATTGGGG CTAACTCACAGGCCTTTGCCGGTACCGCGGTGCTGGTGAACTGTGTTAAAAGCTTCCCGCAAAACCGAGGCAGTGTCCTC GGTCTTGCCAAGGGTTACATGGGTCTTAGTGGCGCCATTTTCACGCAGCTCTACCATGCTTTCTATGGTGACAACCTCGA TGCTCTCATTCTCTTCATTGCTTGGCTTCCGGCCGCCATTTGCTACGTCTTGCTTCCAGCATTCCGGGCTATAGATAAGA CCCCACCACAACAGGAGAACGAAAACAAAGTTTTTTACAAGTTTCTGTACCTTTCACTAGGCCTTGCAGGGTTTCTGATG GTACTCATCATTGTGCAGAACAAGATCAACTTTCTAAGGGTTGAGTACATTGTGTGTGCCATGGTGGTTCTTTTCTTACT TCTTCTCCCACTTGCTTTGGTGTTTACAGAGGAGTTCAGGATCTGGACCCAAAAGATTCAAAAGAAACAAAATCAAAACT TGTTCAATGATGATTCACAATTGAAAGTAGCTGTGGATTTGAATCTGAATTTGCAGAAGGAAGCACCAACTGCCCCAAGT ACAACAACAACACCACAAAAGAAAATTTGTGGTCTGAATTTTACAAGCAAAATGCTGAAACCCCCACATAGGGGTGAAGA TTACACCATCTTACAAGCTTTGTTGAGCATTGATATGTGGGTTCTGTTGATTTCAACAACTATTGGAATTGGTGGGACAT TGACTGCACTTGACAATTTGGGACAAATTGGGAACTCTTTGGGGTACCCCAAGAAGAGTCTTACAACATTTGTGTCCCTT GTGAGTATATGGAACTATCTTGGAAGAGCAATGTGTGGCTATGCCTCTGAATACTTGTTATCTAAATACAGATTCCCTCG TCCATTGATGTTAACTCTGGTAATGCTTCTCTCTTGTGTTGGCCATCTCTTGGTAGCGTTCGGTGTGCCGAACTCTCTCT ACATTGCTTCTCTGATTAATGGGTTTTGCTTTGGGGCTTTATGGCCTTTAATGTATGCCATCATATCTGAGATTTTTGGC CTCAAATACTACTCAATTTTGCTTCATTTTGGAACCATGGCAAGCCCTCTTGGGTCTTACTTGCTCAATGTGAGAGTGGC TGGTTATCTTTATGATAAGGAGGCTTTGAAGCAATTGCATATGAAGGGGCTCACAAGGCAAGCAGGGAAGGAGTTAAATT GTTCAGGAGTGGAGTGTTATAAGATGGCTTTTTTCATAATCACAGCATCCACTTTGGTAGGTTGTTTTTCTTCTATCGTT TTGGTGTTAAGGACCAGGAAGTATTACAAAAGTGTCACATATGAAAAGTTTAGAGCAGTGGAAGCAGAGAAAGCAGAGAC CAGTGCAGTTGCTACTCCAGCTGCCACCACCACAAGTCACTCGTAAAATGAAGAAAAACTTCTCCATGCCTTCCTAATTG TTGTATTCTCTCTTAATTAGCAAATAAGTGACTGTTGAGTGTAACAAATGTCATGTTGTCACAAATATATTGAAATTTGA TATTTGCATTTTAGTAATTAACGCGTAGAGGAGAACACACCTCTCTAAATTAGAGAGTTACCTAAAACCAATCAATTTAA ATTTATGCACACACATTTTTTTATTTCATCATATTTGCATTCACTTTTTCTTTATACGCCTCTCAGCCTCTCATCTTTTT CTTTAATTACTCATCATATATCTCTC
CDS sequence (LotjaGi5g1v0084200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAAAAGGATGAAGAATTTCAGTTTCCACGTTCTCACCGGAAGCTGGTTCTTGGTCTTTGCCTCTATTCTAATCAT GGCCTTTTCAGGAACAACCTACTTGTTTGGTCTCTACTCAAGCCAAGTGAAACACTCTTTGGGTTATGACCAAACCACTC TGAACCTCATCAGCTTCTTCAAAGATATAGGCACCAACGTTGGAATCGTCTCGGGGCTAATCAGTCAATTCACCTCTCCA TGGGTGGTCCTCGCGATTGGAGCCACCATGAACCTCGTCGGATACTTCATGGTATGGCTCTCCGTCACGGGACACGTCGT GAAGCCACAAGTGTGGCAAATGTGTCTCTACTTTTACATTGGGGCTAACTCACAGGCCTTTGCCGGTACCGCGGTGCTGG TGAACTGTGTTAAAAGCTTCCCGCAAAACCGAGGCAGTGTCCTCGGTCTTGCCAAGGGTTACATGGGTCTTAGTGGCGCC ATTTTCACGCAGCTCTACCATGCTTTCTATGGTGACAACCTCGATGCTCTCATTCTCTTCATTGCTTGGCTTCCGGCCGC CATTTGCTACGTCTTGCTTCCAGCATTCCGGGCTATAGATAAGACCCCACCACAACAGGAGAACGAAAACAAAGTTTTTT ACAAGTTTCTGTACCTTTCACTAGGCCTTGCAGGGTTTCTGATGGTACTCATCATTGTGCAGAACAAGATCAACTTTCTA AGGGTTGAGTACATTGTGTGTGCCATGGTGGTTCTTTTCTTACTTCTTCTCCCACTTGCTTTGGTGTTTACAGAGGAGTT CAGGATCTGGACCCAAAAGATTCAAAAGAAACAAAATCAAAACTTGTTCAATGATGATTCACAATTGAAAGTAGCTGTGG ATTTGAATCTGAATTTGCAGAAGGAAGCACCAACTGCCCCAAGTACAACAACAACACCACAAAAGAAAATTTGTGGTCTG AATTTTACAAGCAAAATGCTGAAACCCCCACATAGGGGTGAAGATTACACCATCTTACAAGCTTTGTTGAGCATTGATAT GTGGGTTCTGTTGATTTCAACAACTATTGGAATTGGTGGGACATTGACTGCACTTGACAATTTGGGACAAATTGGGAACT CTTTGGGGTACCCCAAGAAGAGTCTTACAACATTTGTGTCCCTTGTGAGTATATGGAACTATCTTGGAAGAGCAATGTGT GGCTATGCCTCTGAATACTTGTTATCTAAATACAGATTCCCTCGTCCATTGATGTTAACTCTGGTAATGCTTCTCTCTTG TGTTGGCCATCTCTTGGTAGCGTTCGGTGTGCCGAACTCTCTCTACATTGCTTCTCTGATTAATGGGTTTTGCTTTGGGG CTTTATGGCCTTTAATGTATGCCATCATATCTGAGATTTTTGGCCTCAAATACTACTCAATTTTGCTTCATTTTGGAACC ATGGCAAGCCCTCTTGGGTCTTACTTGCTCAATGTGAGAGTGGCTGGTTATCTTTATGATAAGGAGGCTTTGAAGCAATT GCATATGAAGGGGCTCACAAGGCAAGCAGGGAAGGAGTTAAATTGTTCAGGAGTGGAGTGTTATAAGATGGCTTTTTTCA TAATCACAGCATCCACTTTGGTAGGTTGTTTTTCTTCTATCGTTTTGGTGTTAAGGACCAGGAAGTATTACAAAAGTGTC ACATATGAAAAGTTTAGAGCAGTGGAAGCAGAGAAAGCAGAGACCAGTGCAGTTGCTACTCCAGCTGCCACCACCACAAG TCACTCGTAA
Protein sequence (LotjaGi5g1v0084200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKRMKNFSFHVLTGSWFLVFASILIMAFSGTTYLFGLYSSQVKHSLGYDQTTLNLISFFKDIGTNVGIVSGLISQFTSP WVVLAIGATMNLVGYFMVWLSVTGHVVKPQVWQMCLYFYIGANSQAFAGTAVLVNCVKSFPQNRGSVLGLAKGYMGLSGA IFTQLYHAFYGDNLDALILFIAWLPAAICYVLLPAFRAIDKTPPQQENENKVFYKFLYLSLGLAGFLMVLIIVQNKINFL RVEYIVCAMVVLFLLLLPLALVFTEEFRIWTQKIQKKQNQNLFNDDSQLKVAVDLNLNLQKEAPTAPSTTTTPQKKICGL NFTSKMLKPPHRGEDYTILQALLSIDMWVLLISTTIGIGGTLTALDNLGQIGNSLGYPKKSLTTFVSLVSIWNYLGRAMC GYASEYLLSKYRFPRPLMLTLVMLLSCVGHLLVAFGVPNSLYIASLINGFCFGALWPLMYAIISEIFGLKYYSILLHFGT MASPLGSYLLNVRVAGYLYDKEALKQLHMKGLTRQAGKELNCSGVECYKMAFFIITASTLVGCFSSIVLVLRTRKYYKSV TYEKFRAVEAEKAETSAVATPAATTTSHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 5 | 574 | 570 | 1.9E-259 | – | |
| PANTHER | 5 | 574 | 570 | 1.9E-259 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 12 | 36 | 25 | - | – | |
| SUPERFAMILY | 12 | 194 | 183 | 2.22E-8 | ||
| Pfam | 17 | 262 | 246 | 7.5E-85 | ||
| CDD | 17 | 543 | 527 | 5.46299E-101 | – | |
| Phobius | 37 | 55 | 19 | - | – | |
| Phobius | 56 | 74 | 19 | - | – | |
| Phobius | 75 | 80 | 6 | - | – | |
| TMHMM | 80 | 102 | 23 | - | – | |
| Phobius | 81 | 104 | 24 | - | – | |
| Phobius | 105 | 115 | 11 | - | – | |
| TMHMM | 115 | 137 | 23 | - | – | |
| Phobius | 116 | 137 | 22 | - | – | |
| Phobius | 138 | 148 | 11 | - | – | |
| Phobius | 149 | 170 | 22 | - | – | |
| Phobius | 171 | 175 | 5 | - | – | |
| Phobius | 176 | 196 | 21 | - | – | |
| TMHMM | 177 | 199 | 23 | - | – | |
| Phobius | 197 | 215 | 19 | - | – | |
| TMHMM | 212 | 234 | 23 | - | – | |
| Phobius | 216 | 233 | 18 | - | – | |
| SUPERFAMILY | 217 | 555 | 339 | 1.02E-20 | ||
| Phobius | 234 | 238 | 5 | - | – | |
| Phobius | 239 | 263 | 25 | - | – | |
| TMHMM | 244 | 263 | 20 | - | – | |
| Phobius | 264 | 335 | 72 | - | – | |
| Gene3D | 336 | 562 | 227 | 2.6E-11 | – | |
| Phobius | 336 | 362 | 27 | - | – | |
| TMHMM | 342 | 364 | 23 | - | – | |
| Phobius | 363 | 381 | 19 | - | – | |
| Pfam | 370 | 558 | 189 | 1.8E-9 | ||
| TMHMM | 374 | 396 | 23 | - | – | |
| Phobius | 382 | 404 | 23 | - | – | |
| Phobius | 405 | 415 | 11 | - | – | |
| Phobius | 416 | 435 | 20 | - | – | |
| TMHMM | 417 | 436 | 20 | - | – | |
| Phobius | 436 | 440 | 5 | - | – | |
| TMHMM | 441 | 463 | 23 | - | – | |
| Phobius | 441 | 463 | 23 | - | – | |
| Phobius | 464 | 474 | 11 | - | – | |
| TMHMM | 475 | 497 | 23 | - | – | |
| Phobius | 475 | 499 | 25 | - | – | |
| Phobius | 500 | 529 | 30 | - | – | |
| TMHMM | 530 | 552 | 23 | - | – | |
| Phobius | 530 | 551 | 22 | - | – | |
| Phobius | 552 | 589 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0084200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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