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LotjaGi5g1v0084800.1

Overview

Field Value
Gene ID LotjaGi5g1v0084800
Transcript ID LotjaGi5g1v0084800.1
Lotus japonicus genome version Gifu v1.2
Description Ras family protein; TAIR: AT5G03530.1 RAB GTPase homolog C2A; Swiss-Prot: sp|O49841|RAC2A_ARATH Ras-related protein RABC2a; TrEMBL-Plants: tr|A0A0R4J442|A0A0R4J442_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0084800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:14556164..14559070) extracted from Lotus japonicus Gifu genome v1.2.

GCAAATTGTTCCTCAACTCCGGCAAAGGTAGCCGTTTTCTTTTCTTTAGCTTCCATCCAATAAATGAAAGATGCTTCTGA TGATGAGAGTGAGATATATACCCCATTCCATCCATTTTCCTTTTCTCTCTCCCCGTTTTGCTTTCCACCCACACATACAT ACAAACATTCTTCAGAAAAAGCACATCCTTGTCTTCTTCATCAATCATCATCATCATCATCATTCACAGTCTGTGAAAAA AAAACATGAGTTCTTCTTCTGGTCAGAGCAGTGCCTATGATCTCTCTTTCAAGATCTTGTTGATCGGTGATTCTGCTGTT GGGAAAAGTAGCCTACTTGTTAGCTTTATCTCTAACTCTGTTCATGATATTGGCCCCACAATTGGTAATTCCTCTGTTCT GGTTCAATAGTGGTTCTCAATTACTGATTTTGCTTATTACTTTGATTATACCATATCATCATGTACAAATTCACTATTCT ATTGTTTTCTTTCTACAGAGAATTTTACAATTGATGCTTTAAACTGCTTTTATCAGATTTGAGTTTTATTGTTGTTATCT TCTGTTGCTCTATATGATGTAATCCATTCTGTTGTTCTTATCTTGTGTTGTTCTATGTGATGTAGGTGTTGATTTTAAGA TCAAGCTGCTCACAGTTGGTGGGAAGAGATTGAAATTAACTATTTGGGACACTGGTAATCTATTGTTAAATATTTAATTC GACCCTTATTTATTGTCTGGGATCATGTGAATTGGATGCAAATAAAGACGATGAAATGTTCCTCATAGGGTCATTTTGTT GAATCAATTGTCCATTGACCTAAATGACTGATTGAAATGGTATATTGAAGACTGATAAAATTACATCTATTGCAGCTGGG CAAGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCACAAGGAATCATTCTTGGTATGCTAAAATGATTTGT TTTTCATGGTTGCAACTAGCAACGAAGTCTATTCTAAGTCACAATAAGGAAATCCAGTAAAATAGTAAGTGCATGTTTGA AAAGTCATTTGAAAATCGCGGTGAAGCCAAAATCATGATGGATAGAAGAAAAGCTAAGTAAGTTGATTCTGGCTTCATCG TGGTTTTTGAACAAGCTTCCAAACATGCACTACTTCTACTTGGGTTATGAACCATAAATTTAACCAATTTTAGGTTCTGC TTTTAATTTTGTATTAAGTAACTTGCACAATTCTTCATCTTTTTAATGTCTTATTTATAAGCATATTTTTCTTGGGTCTT ATGAAACCACCAGTTTGTAATGAGTAAAATGATTAATGCATATTTTTAAACTGTTACTAGTTAGCATCTTTTATATCCAA GGCTTACACTTATAGAGTAATTTGTTTTATCTTCAGTTTATGATGTATCAAGAAGAGACACATTTACAAACTTATCAGAA GTGTGGTCTAAAGAAGTGGAACTCTATTCAACTAATCAGGATTGTGTGAAGGTGCTAGTTGGAAATAAAGTTGATAAAGT AAGTTTTGTGTTTTTGTCTAGTTCATGAATATATAACCCAAGGAGATGAATCAATAACTACTTTGAAATATTTCTTCAAT GAAATGTTCAAAAGCTCAATTATGGAATACAGTGAAAATACATAGCTCTTAGCTTGTCAGCAATCTGCATGATATTTAAT AAAACAACACTCAAATTACGTTTTTCAAATGTCTTCCTTCTGTCATGAGTTACACTGTAATAGAACTAATCTGTAATACT CTCATTACTTGAAGTGAATAACTTCAATTCTATCCATCAATGCTTCAAGATTCAAAACTTATTGACCAACTGAAATTTAT TAAATTATGAAATGGACAACCATGTGATTCTTATAATGTAGTTCCATACTTGGCCACTATCATCATGATTTCCTGATGAC ATCCATAAAAAAAATTGGACCCTTAATTTGTATTTAGCCATAAACTAGAATTGATCCCATTTATACATGCTTGATGTCTC AAGTCTTTGAGTCCAGCTTCCAAGTAGCATGATTTTATGGATTTGATGTCAATTCAGTGAACATTGAGCTTATTACTTGC GTGCACTTTTGACATAAGTGTCATATGAAACAATGATGTATTATGTTCTAAACCTTTTCATGGTTTATTTATCTAACTTC AGGATTCCGAAAGGGTTGTGAGCAGAGAAGAGGGTATAGCTCTTGCGGAAGAGTTGGGATGTTTGTTTTTTGAATGTAGT GCCAAAACTCGAGAGAATGTGGAGCGATGCTTTGAGGAACTTGCACTGAAGGTACGGTTTTTAAGCAATCTTAGCTAAAT ACTTTTATGGTGTTTGTCTCCATGTGTACAAGACAATTTTGAAGCTAATTGAGGGTAGCTAAATATGGCATTATTGATTT CATAGATAATGGAAGTTCCGAGTCTTTTGGAAGAAGGATCAACAGCAGTGAAAAGGAATATTTTAAAGCAAAAACAGGAA CCCCAAGCATCCCAAGATGTTGGTTGTTGCTCTTAAAATGCTCCAATGTGGGCATTGAGTCTTAAAATAACCACCATATC TTGGACTGATCCTCTGATCCTCTGATCCCTGTATATGTGAAGCTTCTTTCCTTGTATCTTGTGAGTGCAATTGTCTTTTG GTTGCTTACACCTATAAATAGAGAATTGGCGACAATTCTATCTTTTGTAAATTTCTTTGCCTTCTGTACTGTAATCTGTT ATTGTTTTATCCAAATGAATACACCCTTGTTCAATTACTGAAGAATATGTGTAGGGCCTTGTTTAAGGTCTTCTTGTGCT GATCTGTCAAGTGAAATACTCGTACGAATCTACTATTCTATTAAAAGATTGTTGTACAAATGGACGTCTATCGCACTTGG ATCACAAAATTTGATTTTTAATGAAAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0084800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTTCTTCTTCTGGTCAGAGCAGTGCCTATGATCTCTCTTTCAAGATCTTGTTGATCGGTGATTCTGCTGTTGGGAA AAGTAGCCTACTTGTTAGCTTTATCTCTAACTCTGTTCATGATATTGGCCCCACAATTGGTGTTGATTTTAAGATCAAGC TGCTCACAGTTGGTGGGAAGAGATTGAAATTAACTATTTGGGACACTGCTGGGCAAGAAAGGTTCAGAACGCTAACTAGT TCTTACTATAGAGGAGCACAAGGAATCATTCTTGTTTATGATGTATCAAGAAGAGACACATTTACAAACTTATCAGAAGT GTGGTCTAAAGAAGTGGAACTCTATTCAACTAATCAGGATTGTGTGAAGGTGCTAGTTGGAAATAAAGTTGATAAAGATT CCGAAAGGGTTGTGAGCAGAGAAGAGGGTATAGCTCTTGCGGAAGAGTTGGGATGTTTGTTTTTTGAATGTAGTGCCAAA ACTCGAGAGAATGTGGAGCGATGCTTTGAGGAACTTGCACTGAAGATAATGGAAGTTCCGAGTCTTTTGGAAGAAGGATC AACAGCAGTGAAAAGGAATATTTTAAAGCAAAAACAGGAACCCCAAGCATCCCAAGATGTTGGTTGTTGCTCTTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0084800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSSSGQSSAYDLSFKILLIGDSAVGKSSLLVSFISNSVHDIGPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFRTLTS SYYRGAQGIILVYDVSRRDTFTNLSEVWSKEVELYSTNQDCVKVLVGNKVDKDSERVVSREEGIALAEELGCLFFECSAK TRENVERCFEELALKIMEVPSLLEEGSTAVKRNILKQKQEPQASQDVGCCS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24073:SF1115
5 204 200 9.9E-110 –
PANTHER
PTHR24073
5 204 200 9.9E-110 –
Gene3D
G3DSA:3.40.50.300
5 208 204 1.0E-62 –
ProSiteProfiles
PS51419
10 211 202 31.861 –
SUPERFAMILY
SSF52540
11 191 181 3.68E-57
IPR027417
SMART
SM00173
12 179 168 1.0E-30 –
PRINTS
PR00449
15 36 22 6.1E-36 –
TIGRFAM
TIGR00231
15 171 157 6.2E-30
IPR005225
CDD
cd01863
15 176 162 8.71635E-95 –
SMART
SM00175
15 179 165 7.2E-96 –
Pfam
PF00071
16 177 162 3.3E-54
IPR001806
SMART
SM00174
17 179 163 9.2E-14 –
SMART
SM00176
20 207 188 3.6E-4 –
PRINTS
PR00449
37 53 17 6.1E-36 –
PRINTS
PR00449
55 77 23 6.1E-36 –
PRINTS
PR00449
119 132 14 6.1E-36 –
PRINTS
PR00449
154 176 23 6.1E-36 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0084800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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