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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0085300 |
| Transcript ID | LotjaGi5g1v0085300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Thaumatin-like protein; TAIR: AT1G75800.1 Pathogenesis-related thaumatin superfamily protein; Swiss-Prot: sp|O80327|TLP1_PYRPY Thaumatin-like protein 1; TrEMBL-Plants: tr|I3SCW7|I3SCW7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0085300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:14665086..14666802) extracted from Lotus japonicus Gifu genome v1.2.
ATTCATTGGAATATGAGACACGATTGCACACAACTGAAATTCATTACTAGATGTTTTTAAGTGTTGTGGTTTACCTTGAT AATTTTTCAGCCATCCTCTATAAATTACATTTTTCGTCATATCCCAAACTTTGTGGCTGCATTGTCAAATTCGTAGTTGA AGGCTGCTTTTCATGGCTCCTAACACCATTATCATGCTTTTCCTTCCCTTGCTGCTGCTATGTTCTGGTAATGTATAGGA GTACTATTTTGTTAAACATGTATAAAGGGGTTTCCTTTCACGAATACATTTGACGTTTGATCACTATATATAAAGGTAAA AAAGGTTTCATAAATTTTGTATACTCATTTCGCTTACATGCACTTCAGTTCAAACAATTAATACAATCATTAATGAACTA AGTTGGTGGGTTTTATTAATTGACTTAAATAAAAAATTTAAACCCTCTTGATGTTAACCTTTGATTTTTCATCAAGCATG TTCAATTTAATTTAATCAGATTCACTAGCACGATGCATAGGATCGGTGGCTTCCACAAAATCGCAGATCAACATCAAAGT TAAGAAAATGAATCCACCCTAGAGATCTTCACAGTCTAAAAATATGAATAAAAAAAAAAAATTAGTCACTATTGGGCAGG ATTGAATGATTTTTTTTCTTCATTTGTCAAGAATTACATTGATAACCATTTTTATGATTCAAGATCTAAATTGAATGTGC TTCTCATCTTTCAAGAATTATTTTTACGTTCAAAAAAGAATTATTCTGACTACTATATCTTTAAGAAACTAAGTTAACTA ACCCTGTATTTTAATGATTAATTATAATCACTATTCAGTGAAATTGTAAGAGTTCTTAATCTGATGCAAAACTTTTTACA TGTTTTTTCAGGAGTGTATTCTGATCTCATACTTAATTTGGAAAATCGGTGCGCAGACACTATATGGCGTGGCTCCAACT CAACCATTTCGGACATACAACCATTTTTAAATCCGGGAGTCCGTACGTCACTCATGGTGAGAGATCCTTGGTCCGGAACC ATTTGGCCTCTAACTCGATGCACAAATAGCGCATTACAGAACTTCTCATGTGCAACCGGTGATTGCGGGACAGGATTACT AGCTTGTTCAATCCCCAAATACCCGGTAACCGAATTCATTTTCAAAATCAACGATTCTGTAGTCTCATATGATCTAAGCT TAGTTCATGGACAAAATGTTCTGGTCCGCGTCAAACCCAACGGTGGAACCTTGGTGGATGGAGGATCAGGTCCTTGCCCT ATGGTGGAATGTAACAAAGAACTTTCAAGTGTGTGTCCCTCGCATTTGATAGCGTATGACCAAGATGGCCAGTATGTGGG TTGCAAGAATAGTTGTGATGTGATAGATGATCCAAAGTATTGTTGTGATGGTGTTGCTTGCATTCCTGATGAGTACATGA AAATGAATAAGCAGCTGTGTCCTGATGCTACAACCTTCCAGGGTGACAAACAGCCTTCAGTGTGCAAAGGGGCTATTAGT TATGATATAACCTTCTGTCCTGATCCCCTGTAATTGCAATATAGTTTTGGAACAATCAACAATTAATCTGGGATTGTAAG CATACATATTATATTGGAGAATAAATGGAATAAAGGATAAGATTCTATAGATTCATTCTATTTTATTGTTATTTTGGTGC ACAAGATATATACAATTCCATTCCTTATTAAATGAAA
CDS sequence (LotjaGi5g1v0085300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCTAACACCATTATCATGCTTTTCCTTCCCTTGCTGCTGCTATGTTCTGGAGTGTATTCTGATCTCATACTTAA TTTGGAAAATCGGTGCGCAGACACTATATGGCGTGGCTCCAACTCAACCATTTCGGACATACAACCATTTTTAAATCCGG GAGTCCGTACGTCACTCATGGTGAGAGATCCTTGGTCCGGAACCATTTGGCCTCTAACTCGATGCACAAATAGCGCATTA CAGAACTTCTCATGTGCAACCGGTGATTGCGGGACAGGATTACTAGCTTGTTCAATCCCCAAATACCCGGTAACCGAATT CATTTTCAAAATCAACGATTCTGTAGTCTCATATGATCTAAGCTTAGTTCATGGACAAAATGTTCTGGTCCGCGTCAAAC CCAACGGTGGAACCTTGGTGGATGGAGGATCAGGTCCTTGCCCTATGGTGGAATGTAACAAAGAACTTTCAAGTGTGTGT CCCTCGCATTTGATAGCGTATGACCAAGATGGCCAGTATGTGGGTTGCAAGAATAGTTGTGATGTGATAGATGATCCAAA GTATTGTTGTGATGGTGTTGCTTGCATTCCTGATGAGTACATGAAAATGAATAAGCAGCTGTGTCCTGATGCTACAACCT TCCAGGGTGACAAACAGCCTTCAGTGTGCAAAGGGGCTATTAGTTATGATATAACCTTCTGTCCTGATCCCCTGTAA
Protein sequence (LotjaGi5g1v0085300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPNTIIMLFLPLLLLCSGVYSDLILNLENRCADTIWRGSNSTISDIQPFLNPGVRTSLMVRDPWSGTIWPLTRCTNSAL QNFSCATGDCGTGLLACSIPKYPVTEFIFKINDSVVSYDLSLVHGQNVLVRVKPNGGTLVDGGSGPCPMVECNKELSSVC PSHLIAYDQDGQYVGCKNSCDVIDDPKYCCDGVACIPDEYMKMNKQLCPDATTFQGDKQPSVCKGAISYDITFCPDPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 235 | 235 | 6.5E-78 | ||
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 235 | 235 | 6.5E-78 | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| PIRSF | 1 | 237 | 237 | 2.0E-44 | ||
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 238 | 216 | - | – | |
| SUPERFAMILY | 25 | 236 | 212 | 1.31E-39 | ||
| PRINTS | 25 | 37 | 13 | 2.8E-8 | ||
| Gene3D | 25 | 235 | 211 | 9.9E-49 | ||
| ProSiteProfiles | 25 | 235 | 211 | 22.853 | ||
| SMART | 26 | 235 | 210 | 3.1E-16 | ||
| Pfam | 30 | 235 | 206 | 3.2E-42 | ||
| PRINTS | 68 | 79 | 12 | 2.8E-8 | ||
| PRINTS | 81 | 110 | 30 | 2.8E-8 | ||
| PRINTS | 116 | 132 | 17 | 2.8E-8 | ||
| PRINTS | 225 | 234 | 10 | 2.8E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0085300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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