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LotjaGi5g1v0088500.2

Overview

Field Value
Gene ID LotjaGi5g1v0088500
Transcript ID LotjaGi5g1v0088500.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase DBP5; TAIR: AT3G53110.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38; TrEMBL-Plants: tr|A0A151RCB2|A0A151RCB2_CAJCA DEAD-box ATP-dependent RNA helicase 38; Found in the gene: LotjaGi5g1v0088500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:15077294..15080541) extracted from Lotus japonicus Gifu genome v1.2.

GCTGCTCCGCCTGCACACAAAAGCTGGGCTGACGAAGCCGACGAAGAAGCCAGTGCCTCGTCGACCGCAACCTCATCCAT CAACCTCGACGGATTAGCGATCGACGAGACCAAGAAGTCACCCAAGCTGTTAGACGATCCCGACGACTCCAATATACAAG CGGTAACACCCTAATCTTCTTCCTCTTTCTCGGCGGCGAGAATGAAATTCACGGTTTAGGGTTTTGTTTGTGCGTCCAAT TTTGGTGCAGGTTTCCTCCGGCGACACTCCGTATACCTCGGCGGCGACGTTTGAAGACTTGAGTCTCTCGCCGGAGCTGG TGAAGGGACTTTACGTGGAGATGAAGTTCCAGAAGCCTAGCAAAATCCAAGGCATAAGCTTGCCCATGATCCTGAGCCCT CCACATAGAGACTTGATCGCACAGGCTCATAATGGTTCCGGCAAGACCACTTGTTTTGTGCTTGGGATGCTTAGTCGTGT TGATCCCAAGTTGCAGGCTCCCCAAGCCCTCTGCATTTGCCCCACCAGGGAGTTAGCTATTCAGGTGATTTTGGGTTCCT TTTTGTGGAGAAAATGTGTCTCATGATGTGTTATTTTCGGGTTTTCGTACTTTTTGATTGGTAATCAAAGGGGAATTGTT AGTGTTGAATGATGTTGCTTGGGTGTTTATTGTTGTTGTGTTTGTGTGGCAGAATATTGAGGTTTTGCGAAAGATGGGGA AGTATACTGGGATTAGTTCAGAATGTGCTGTGCCCATGGACAGCAGGGATGTGATTCCGATCAACAAACGTCCGCCAGTT ATGGCTCACGTGGTCATTGGGACTCCTGGCACCATTAAGAAGTGGATAAGTTTTAAGAAACTCGGGGTGGCGAGGTTAAA GATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGTAATTCAGTATTGCGGATGAACTGTTCTTTGGCTTGTTA CATGACCTTATCATTCTTGAATTCTTCCTGATTTTTATTATTACTCTTCCGATTTATTAGTCAATTAGGATAAGTGAATT GGTGTGGTTTAGTGAATTATTATTGCATTTTTTTTTTCCTTTAATTGTTTCTGTTAGCAGGTTTTGGTTTGTAAATATGC TGGGGTTTAGTTTCCTTAATTATTCTTAATTGTCGTGTTGCAGGATGGATTTCAAGATGATTCTTTGAGGATAATGAAAG AAATTGAAAAATTGAATTCTGGCTGTCAGGTTTGTTGTACCCTCTTCTGCTTATTGTGCTTGCATGCGTGACATTTCAAC ATTCAAGAAGTTTTTGCATTGACTTGGATTAAGGCCAATTAGACACATCTTCATTATACATTGATTAACTGCATGAATAT CTGTGTCAAATTACTGCTGCACTTTTAAAATGTTGATATATCAGATTATGGTCGGTTTAGTCTTATGCAACTTGTTTAGA CTTTCTTTCTGCAAATATTTCTTCATTTATAGGGACAGTATGCTCATACATATGGATATATGATGTTAGTGGCGGATTTT GTCTTTTAATTAGTTTCTCAAACTTATACCTATCTAGAGGGGGGGGGGGGGGGGTGGGGGGTGGGGTTGGCGGTGACGGT GAAGTTCCCACTTCCCACGAGGATCCCCATATTCATGTGGAAATTGCCATCCCTATTCTTGTTTTTTTTGCTTAAAATGT TATTTAGTTCTTAAAATATAAGGACTTAAAAAAACATGCTTTATATTATTAAAATAAGTTAAATCACGCAAGCCCTGTAG AAAGTGACTTGTATAAAGCCCCTGCCAGTTTTTTTTCTTAGGTCCAAGAATTACGTTTGGAGGGAGCCTCAGGGAATAAC TTGTATAAAGAGTTAGGAGGGAAGTTAGAGAAGAGACAAAGAGATCCGATGAAAATTTTTAAATGGAGAAATTCAAACAT GATGAGGACCACATGTACTTTCCTATTTCGGTTTATGGCTTGGGGGTAAAAGAAATGGACAAGGGAACTCATAAATTGGC TGGGAGCATTGCTCTTTCATTTCTTTCTAGTGATCTGATTCTGTTCAGTAATACATTTTTGTCTAACTAGGAATTAGAAT CTTCAGCTATAAAGATTAAATCTTCTTTTGCTTGATGATCGGTAATGAGTATAACTAAGTTTGGATTTTCGTTGAGGGGA AATATAACTGTTTCTCCTTGCACTTGAATAAACTTTTTACGTAGTTTGGCTATTCCTCAAGTAATTCAAATGCTCGTGTC TTCTTTAATGTGATGTAGTTGATTTTTTCAGTGTTTTTTTGTTACTAAGAATTTTGATTGGGTTGTGATTCTCCAGGTTC TTTTGTTTTCTGCTACTTTCAATGATAAAGTCAAGAACTTTGTTTCAAAGGTAGTTAAGAAGGATCACAATCAACTTTTT GTGAGGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTGCGTTGTCTTGATGAACTCTCTAAGATTGAAGT GATACGGGATTACATATTTGAAAATGGAGAGAACATGGGGCAAACTATTATATTTGTACGCACAAGAAATAGCGCAAAGA TGTTGCATAAAGCACTTGTTGATTTGGGCTACGAGGTTACTGCCATACAAGGTGCTCTTAATAATGAAGATAGAGACAAG ATTGTCAAGGAGTTCAGAGATGGGTTAACTCAGGTTCTGATATCAACCGATGTTCTTGCCCGCGGCTTTGATCAACAACA GGTGCTGAATTGGTTCTGCCCTCTCTCTGTCCCTTCCCTTTTTGTGTATTTACTCACTTGCTTTTCAGTGTGATTACATC CTTCCACTGTATATTTGTCCAGATTAATTTGGTTATCAACTATGATCTTCCGGTGAAACACACTGCTGAGTATACCCGTG AACCCGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGGCGTTTTGGGCGTAAGGGTAAGTTTTGAAAA TTGTCTTCTTGCTATCATGTAGTTCCCATTATTGTTAAAAATTGTTGTAATCAGTGAGCTTCCTATTGTTACTTTTTTAT GTGGTGATGGTGTAGCTCATGTAAGTTGGTTAGTTGAACTTTAGCATTGTAAAGAGGTCATGTATCTCTTACAAATCAAT GTGCCCGCTTTAGCCATGCTTTCAATTATATTGCAATGATAAGGGTAGACCTGAGCCCCGGGTAGTTGGAACTTGGTAGG TAATATTTTCCTCCAAAGGAAAATTTAGCTCTCAACTTGTTTCATTGG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0088500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGTTCCAGAAGCCTAGCAAAATCCAAGGCATAAGCTTGCCCATGATCCTGAGCCCTCCACATAGAGACTTGATCGC ACAGGCTCATAATGGTTCCGGCAAGACCACTTGTTTTGTGCTTGGGATGCTTAGTCGTGTTGATCCCAAGTTGCAGGCTC CCCAAGCCCTCTGCATTTGCCCCACCAGGGAGTTAGCTATTCAGAATATTGAGGTTTTGCGAAAGATGGGGAAGTATACT GGGATTAGTTCAGAATGTGCTGTGCCCATGGACAGCAGGGATGTGATTCCGATCAACAAACGTCCGCCAGTTATGGCTCA CGTGGTCATTGGGACTCCTGGCACCATTAAGAAGTGGATAAGTTTTAAGAAACTCGGGGTGGCGAGGTTAAAGATTCTTG TTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTCAAGATGATTCTTTGAGGATAATGAAAGAAATTGAAAAA TTGAATTCTGGCTGTCAGGTTCTTTTGTTTTCTGCTACTTTCAATGATAAAGTCAAGAACTTTGTTTCAAAGGTAGTTAA GAAGGATCACAATCAACTTTTTGTGAGGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTGCGTTGTCTTG ATGAACTCTCTAAGATTGAAGTGATACGGGATTACATATTTGAAAATGGAGAGAACATGGGGCAAACTATTATATTTGTA CGCACAAGAAATAGCGCAAAGATGTTGCATAAAGCACTTGTTGATTTGGGCTACGAGGTTACTGCCATACAAGGTGCTCT TAATAATGAAGATAGAGACAAGATTGTCAAGGAGTTCAGAGATGGGTTAACTCAGGTTCTGATATCAACCGATGTTCTTG CCCGCGGCTTTGATCAACAACAGATTAATTTGGTTATCAACTATGATCTTCCGGTGAAACACACTGCTGAGTATACCCGT GAACCCGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGGCGTTTTGGGCGTAAGGGTAATATTTTCCT CCAAAGGAAAATTTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0088500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYT GISSECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEK LNSGCQVLLFSATFNDKVKNFVSKVVKKDHNQLFVRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFV RTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTR EPEPDYEVYLHRVGRAGRFGRKGNIFLQRKI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24031:SF331
1 345 345 3.0E-90 –
CDD
cd17963
1 188 188 4.36996E-94 –
PANTHER
PTHR24031
1 345 345 3.0E-90 –
Gene3D
G3DSA:3.40.50.300
1 198 198 1.5E-50 –
SMART
SM00487
2 208 207 3.4E-37
IPR014001
Pfam
PF00270
8 180 173 1.4E-33
IPR011545
ProSiteProfiles
PS51192
16 192 177 22.92
IPR014001
SUPERFAMILY
SSF52540
54 347 294 2.59E-56
IPR027417
Gene3D
G3DSA:3.40.50.300
199 350 152 1.3E-38 –
CDD
cd18787
205 343 139 5.91179E-41 –
Pfam
PF00271
218 340 123 4.1E-25
IPR001650
ProSiteProfiles
PS51194
221 351 131 17.674
IPR001650
SMART
SM00490
247 340 94 1.4E-24
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0088500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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