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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0088500 |
Transcript ID | LotjaGi5g1v0088500.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ATP-dependent RNA helicase DBP5; TAIR: AT3G53110.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38; TrEMBL-Plants: tr|A0A151RCB2|A0A151RCB2_CAJCA DEAD-box ATP-dependent RNA helicase 38; Found in the gene: LotjaGi5g1v0088500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:15077487..15080523) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGCTGGGCTGACGAAGCCGACGAAGAAGCCAGTGCCTCGTCGACCGCAACCTCATCCATCAACCTCGACGGATTAGC GATCGACGAGACCAAGAAGTCACCCAAGCTGTTAGACGATCCCGACGACTCCAATATACAAGCGGTAACACCCTAATCTT CTTCCTCTTTCTCGGCGGCGAGAATGAAATTCACGGTTTAGGGTTTTGTTTGTGCGTCCAATTTTGGTGCAGGTTTCCTC CGGCGACACTCCGTATACCTCGGCGGCGACGTTTGAAGACTTGAGTCTCTCGCCGGAGCTGGTGAAGGGACTTTACGTGG AGATGAAGTTCCAGAAGCCTAGCAAAATCCAAGGCATAAGCTTGCCCATGATCCTGAGCCCTCCACATAGAGACTTGATC GCACAGGCTCATAATGGTTCCGGCAAGACCACTTGTTTTGTGCTTGGGATGCTTAGTCGTGTTGATCCCAAGTTGCAGGC TCCCCAAGCCCTCTGCATTTGCCCCACCAGGGAGTTAGCTATTCAGGTGATTTTGGGTTCCTTTTTGTGGAGAAAATGTG TCTCATGATGTGTTATTTTCGGGTTTTCGTACTTTTTGATTGGTAATCAAAGGGGAATTGTTAGTGTTGAATGATGTTGC TTGGGTGTTTATTGTTGTTGTGTTTGTGTGGCAGAATATTGAGGTTTTGCGAAAGATGGGGAAGTATACTGGGATTAGTT CAGAATGTGCTGTGCCCATGGACAGCAGGGATGTGATTCCGATCAACAAACGTCCGCCAGTTATGGCTCACGTGGTCATT GGGACTCCTGGCACCATTAAGAAGTGGATAAGTTTTAAGAAACTCGGGGTGGCGAGGTTAAAGATTCTTGTTTTTGATGA GGCTGATCAAATGCTTGCTGAGGTAATTCAGTATTGCGGATGAACTGTTCTTTGGCTTGTTACATGACCTTATCATTCTT GAATTCTTCCTGATTTTTATTATTACTCTTCCGATTTATTAGTCAATTAGGATAAGTGAATTGGTGTGGTTTAGTGAATT ATTATTGCATTTTTTTTTTCCTTTAATTGTTTCTGTTAGCAGGTTTTGGTTTGTAAATATGCTGGGGTTTAGTTTCCTTA ATTATTCTTAATTGTCGTGTTGCAGGATGGATTTCAAGATGATTCTTTGAGGATAATGAAAGAAATTGAAAAATTGAATT CTGGCTGTCAGGTTTGTTGTACCCTCTTCTGCTTATTGTGCTTGCATGCGTGACATTTCAACATTCAAGAAGTTTTTGCA TTGACTTGGATTAAGGCCAATTAGACACATCTTCATTATACATTGATTAACTGCATGAATATCTGTGTCAAATTACTGCT GCACTTTTAAAATGTTGATATATCAGATTATGGTCGGTTTAGTCTTATGCAACTTGTTTAGACTTTCTTTCTGCAAATAT TTCTTCATTTATAGGGACAGTATGCTCATACATATGGATATATGATGTTAGTGGCGGATTTTGTCTTTTAATTAGTTTCT CAAACTTATACCTATCTAGAGGGGGGGGGGGGGGGGTGGGGGGTGGGGTTGGCGGTGACGGTGAAGTTCCCACTTCCCAC GAGGATCCCCATATTCATGTGGAAATTGCCATCCCTATTCTTGTTTTTTTTGCTTAAAATGTTATTTAGTTCTTAAAATA TAAGGACTTAAAAAAACATGCTTTATATTATTAAAATAAGTTAAATCACGCAAGCCCTGTAGAAAGTGACTTGTATAAAG CCCCTGCCAGTTTTTTTTCTTAGGTCCAAGAATTACGTTTGGAGGGAGCCTCAGGGAATAACTTGTATAAAGAGTTAGGA GGGAAGTTAGAGAAGAGACAAAGAGATCCGATGAAAATTTTTAAATGGAGAAATTCAAACATGATGAGGACCACATGTAC TTTCCTATTTCGGTTTATGGCTTGGGGGTAAAAGAAATGGACAAGGGAACTCATAAATTGGCTGGGAGCATTGCTCTTTC ATTTCTTTCTAGTGATCTGATTCTGTTCAGTAATACATTTTTGTCTAACTAGGAATTAGAATCTTCAGCTATAAAGATTA AATCTTCTTTTGCTTGATGATCGGTAATGAGTATAACTAAGTTTGGATTTTCGTTGAGGGGAAATATAACTGTTTCTCCT TGCACTTGAATAAACTTTTTACGTAGTTTGGCTATTCCTCAAGTAATTCAAATGCTCGTGTCTTCTTTAATGTGATGTAG TTGATTTTTTCAGTGTTTTTTTGTTACTAAGAATTTTGATTGGGTTGTGATTCTCCAGGTTCTTTTGTTTTCTGCTACTT TCAATGATAAAGTCAAGAACTTTGTTTCAAAGGTAGTTAAGAAGGATCACAATCAACTTTTTGTGAGGAAAGAAGAACTA TCTTTAGATGCAGTGAAGCAATATAAAGTGCGTTGTCTTGATGAACTCTCTAAGATTGAAGTGATACGGGATTACATATT TGAAAATGGAGAGAACATGGGGCAAACTATTATATTTGTACGCACAAGAAATAGCGCAAAGATGTTGCATAAAGCACTTG TTGATTTGGGCTACGAGGTTACTGCCATACAAGGTGCTCTTAATAATGAAGATAGAGACAAGATTGTCAAGGAGTTCAGA GATGGGTTAACTCAGGTTCTGATATCAACCGATGTTCTTGCCCGCGGCTTTGATCAACAACAGGTGCTGAATTGGTTCTG CCCTCTCTCTGTCCCTTCCCTTTTTGTGTATTTACTCACTTGCTTTTCAGTGTGATTACATCCTTCCACTGTATATTTGT CCAGATTAATTTGGTTATCAACTATGATCTTCCGGTGAAACACACTGCTGAGTATACCCGTGAACCCGAGCCTGATTATG AGGTGTATTTGCACAGGGTTGGTAGGGCTGGGCGTTTTGGGCGTAAGGGTAAGTTTTGAAAATTGTCTTCTTGCTATCAT GTAGTTCCCATTATTGTTAAAAATTGTTGTAATCAGTGAGCTTCCTATTGTTACTTTTTTATGTGGTGATGGTGTAG
CDS sequence (LotjaGi5g1v0088500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTCCAGAAGCCTAGCAAAATCCAAGGCATAAGCTTGCCCATGATCCTGAGCCCTCCACATAGAGACTTGATCGC ACAGGCTCATAATGGTTCCGGCAAGACCACTTGTTTTGTGCTTGGGATGCTTAGTCGTGTTGATCCCAAGTTGCAGGCTC CCCAAGCCCTCTGCATTTGCCCCACCAGGGAGTTAGCTATTCAGAATATTGAGGTTTTGCGAAAGATGGGGAAGTATACT GGGATTAGTTCAGAATGTGCTGTGCCCATGGACAGCAGGGATGTGATTCCGATCAACAAACGTCCGCCAGTTATGGCTCA CGTGGTCATTGGGACTCCTGGCACCATTAAGAAGTGGATAAGTTTTAAGAAACTCGGGGTGGCGAGGTTAAAGATTCTTG TTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTCAAGATGATTCTTTGAGGATAATGAAAGAAATTGAAAAA TTGAATTCTGGCTGTCAGGTTCTTTTGTTTTCTGCTACTTTCAATGATAAAGTCAAGAACTTTGTTTCAAAGGTAGTTAA GAAGGATCACAATCAACTTTTTGTGAGGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTGCGTTGTCTTG ATGAACTCTCTAAGATTGAAGTGATACGGGATTACATATTTGAAAATGGAGAGAACATGGGGCAAACTATTATATTTGTA CGCACAAGAAATAGCGCAAAGATGTTGCATAAAGCACTTGTTGATTTGGGCTACGAGGTTACTGCCATACAAGGTGCTCT TAATAATGAAGATAGAGACAAGATTGTCAAGGAGTTCAGAGATGGGTTAACTCAGGTTCTGATATCAACCGATGTTCTTG CCCGCGGCTTTGATCAACAACAGATTAATTTGGTTATCAACTATGATCTTCCGGTGAAACACACTGCTGAGTATACCCGT GAACCCGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGGCGTTTTGGGCGTAAGGGTAAGTTTTGA
Protein sequence (LotjaGi5g1v0088500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYT GISSECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEK LNSGCQVLLFSATFNDKVKNFVSKVVKKDHNQLFVRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFV RTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTR EPEPDYEVYLHRVGRAGRFGRKGKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 343 | 343 | 6.7E-90 | – | |
CDD | 1 | 188 | 188 | 1.7335E-94 | – | |
PANTHER | 1 | 343 | 343 | 6.7E-90 | – | |
Gene3D | 1 | 198 | 198 | 1.4E-50 | – | |
SMART | 2 | 208 | 207 | 3.4E-37 | ||
Pfam | 8 | 180 | 173 | 1.4E-33 | ||
ProSiteProfiles | 16 | 192 | 177 | 22.92 | ||
SUPERFAMILY | 54 | 344 | 291 | 1.0E-55 | ||
Gene3D | 199 | 345 | 147 | 3.1E-38 | – | |
CDD | 205 | 344 | 140 | 2.23099E-41 | – | |
Pfam | 218 | 340 | 123 | 4.0E-25 | ||
ProSiteProfiles | 221 | 345 | 125 | 17.664 | ||
SMART | 247 | 340 | 94 | 1.4E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi5g1v0088500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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