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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0089500 |
| Transcript ID | LotjaGi5g1v0089500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein, putative; TAIR: AT5G03790.1 homeobox 51; Swiss-Prot: sp|Q9LZR0|ATB51_ARATH Putative homeobox-leucine zipper protein ATHB-51; TrEMBL-Plants: tr|I1LZD7|I1LZD7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0089500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:15573975..15575253) extracted from Lotus japonicus Gifu genome v1.2.
TTTTCACACTAAACCCTCTCTGTATGTTTTAAGGAATGGAAGTGAAACAGCAAGCACTGTCTATGGAGACACCTCCGGCG ATGGAAAAATTGAACTACGGTGGGAACCAGGAGAAGAAGAAGCGGTTAACCTGTGAGCAGCTTGACTCACTGGAGAGTAG CTTCCAGCAGGAGATAAAGTTGGACCCTGACAGGAAGATGAAGCTTTCCAAGGAATTAGGCCTCCAGCCTCGCCAGATCG CTGTTTGGTTCCAGAATAGGCGTGCAAGGTGGAAAACCAAGCAGCTTGAACACTTGTACGATACACTTAAACAGGAATTT GATGCCATAGCCAAGGAAAAACACAAGCTTGAGGAAGAGGTATGAATATAGGTTATATAACATGTGTCTTTTCTTATAGA TATAAAAACATCATCAACCAACAATATCTAACACAACTGGTAGATAGCTCTTTAAGCATCTAGTCCAAAGGTCGACCCCT AAACGGAGCGTATGAATAAGGATTTATTGGGGAGACCTACCCATTTAACGTGATCTCAAAGTCTCAGAGGACTAGTCTCA TGACTTCCGGCTGTGATAGTACATTGATGAGAAAAAAAAATTAGAAACATGATCAATACTTCTATTAACTATGGGTTTGT TTATTGCCAATTCTTTCAAAGTAAAAAAGTTTGAACAACAACTATTCCACAGAAAGTTGTTGACTTCCTTTATGGCTGTG CAGGTTATGAAGTTGAAGGGTATGCTGAGAGAGCAAGGTTGTAGAACGCAACAAGTATCAGCAGGTTATACTACAGAAGT CTCTGCGGAAGAAACAGTGGAAAGCACGTCAGAGCTGGCTCTGCGTTGCTCCAAGATTCATCATCATCATCATCATCATC ATCAGATTCATCAGCAGCAGCAGAATACTGCTAATGCTGATCAGGGAAACTGTTCTCTCACTCACACTCACAGTCACATG GCCGAGGATTGTAGCACAGTTCCAGTCATGTCCTATTGGCCTGGGTTACCTTATTATCCCTAAACTCTCTGAATCAATTA AGTTGTATCAGTTAAGAACTTTTAGCTTTAATGTGAACTTAATTAACATGATTAGTTGGTTACGTACGTACGTAGATAGA TGGAAGAAAGAGACCCGTTTTCCATAGGAACTGACTTCACCTTAGATTAGAAATTTAGAATCAAATTAAGCAGAACTGAT GACATTTGCTGTCAGGGCAGGCAGCATCACTTTATCAGTTTCATGTAGTATTTTTATTGTTACGTACTCGTTACTTCTG
CDS sequence (LotjaGi5g1v0089500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGTGAAACAGCAAGCACTGTCTATGGAGACACCTCCGGCGATGGAAAAATTGAACTACGGTGGGAACCAGGAGAA GAAGAAGCGGTTAACCTGTGAGCAGCTTGACTCACTGGAGAGTAGCTTCCAGCAGGAGATAAAGTTGGACCCTGACAGGA AGATGAAGCTTTCCAAGGAATTAGGCCTCCAGCCTCGCCAGATCGCTGTTTGGTTCCAGAATAGGCGTGCAAGGTGGAAA ACCAAGCAGCTTGAACACTTGTACGATACACTTAAACAGGAATTTGATGCCATAGCCAAGGAAAAACACAAGCTTGAGGA AGAGGTTATGAAGTTGAAGGGTATGCTGAGAGAGCAAGGTTGTAGAACGCAACAAGTATCAGCAGGTTATACTACAGAAG TCTCTGCGGAAGAAACAGTGGAAAGCACGTCAGAGCTGGCTCTGCGTTGCTCCAAGATTCATCATCATCATCATCATCAT CATCAGATTCATCAGCAGCAGCAGAATACTGCTAATGCTGATCAGGGAAACTGTTCTCTCACTCACACTCACAGTCACAT GGCCGAGGATTGTAGCACAGTTCCAGTCATGTCCTATTGGCCTGGGTTACCTTATTATCCCTAA
Protein sequence (LotjaGi5g1v0089500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVKQQALSMETPPAMEKLNYGGNQEKKKRLTCEQLDSLESSFQQEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWK TKQLEHLYDTLKQEFDAIAKEKHKLEEEVMKLKGMLREQGCRTQQVSAGYTTEVSAEETVESTSELALRCSKIHHHHHHH HQIHQQQQNTANADQGNCSLTHTHSHMAEDCSTVPVMSYWPGLPYYP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 14 | 178 | 165 | 1.9E-74 | – | |
| PANTHER | 14 | 178 | 165 | 1.9E-74 | – | |
| SUPERFAMILY | 15 | 84 | 70 | 5.99E-19 | ||
| Gene3D | 20 | 87 | 68 | 1.8E-19 | – | |
| ProSiteProfiles | 22 | 82 | 61 | 17.054 | ||
| SMART | 25 | 86 | 62 | 1.8E-16 | ||
| CDD | 27 | 83 | 57 | 3.88833E-15 | ||
| Pfam | 27 | 80 | 54 | 1.7E-16 | ||
| PRINTS | 53 | 62 | 10 | 3.1E-5 | ||
| ProSitePatterns | 57 | 80 | 24 | - | ||
| PRINTS | 62 | 78 | 17 | 3.1E-5 | ||
| Pfam | 82 | 116 | 35 | 6.7E-9 | ||
| Coils | 88 | 108 | 21 | - | – | |
| MobiDBLite | 154 | 177 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi5g1v0089500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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