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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0090500 |
| Transcript ID | LotjaGi5g1v0090500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT4G12080.1 AT-hook motif nuclear-localized protein 1; Swiss-Prot: sp|Q8VYJ2|AHL1_ARATH AT-hook motif nuclear-localized protein 1; TrEMBL-Plants: tr|I3SDN1|I3SDN1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0090500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:15758134..15762244) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAATTTTAAAATAATGAAAAGTTGGAGGGCGAGTCCCGACAAGAAAATAGCAGTTTCCCATCCCAGCCTCATTATCT TCCATTCCATTAATGCAAATTGCACAGAGAAGAGAGAAAGAGAAACAGAAAAAGAGAGAAAAAATCAGAAAAAGAAAGAA ACAGTGTGAGTGTCTTGTATATGCATAATGCAATTGAATTCATAAATTTTCATTCTCTCCACCTTCTTCAAAAGAGAGCC TAAACCTTCCCTATTCCTTCTACTTCTGGCGCCATTTGCACACTCTTGCAACCCCATCACCTTTCAAAAAACATTAATAC AACCTCTTCTTCTTCTACTACACATTTCTTCAAACACCTTCCATTCATGGAACAACCTGTAAACCTCTCAGCGCCGCCAC ACCCACAACCACTCATGATTAACATGAACGTGGCCAACACCACCACGACGCCGCCAGCGACGGTGCAAACCGCCACAACA ACAACAACAACAGTGGCAACAGCAGCAACAGCAACAACAACACCGGGAAGCACTGAAGGAAGCTTGGATTTGTTTGCTAA GAAGAAGAGAGGAAGACCCAGAAAATACGACGCAGATGGGAACCTGAATCCGGCGTACAAGAAGAGTGCAACGCCGCCAC AGAGATTCACTCTCTCCGCAACCGCAAACGAGTTTTCTGCCAAAAGGGGTCGTGGGAAACCTGCTACTGGGTTTGGAAAC TACCACCTCTTTGCTTCTTTTGGTGAGTGAGTGATGCGAGTTTTTGGTTGGTTTTGACTTACCCGCCAAACAAAAAAAAT TGCTTCTTTTGTTTCCCCCCTTCATTTCCTTACCAGAAGAATAAATCAAGGAATCTCAAGTTTTGTACTTGATTTTTTGT TGGTCCACTGCATCTGGGGTTGTTGGGAATTAGAAATTTTCCATTTTTGGGTTGTGGGGTTTTGGGATCCAGGTTTAAGC ACAATACTAATTGCATTTTTCATTTTCAGTTTTGATGCAAATTAGTTACTTGTTTTCCCTTTTGGGTTTTTGTTTTGCTG CTGATAATGGGTAAACTGTAAGTTAGGGTTCATTTCAGTGAAAAAGGTAGGAACTTTACTTTTTGTTGCTAATTGTGTTA AGGTTCTGCATTTGTTTGAGTTTTTATTTATGGGCAGAAAATTTTTATTTTTCTGAACTTGGATTTTTGGAAATTGGCTA AATTGATTATGCTATAATGTACATTGAGTATTTCTCTATCTGTAATCTTTGAAGGTGAGGTTTTTGCAAGCTCTGCTTCT GGGGATTTCACACCGCATGTGGTGACTGTTTATACTGGAGAGGTAATGCAGAAACCAGCATACATTGTTAGCTTTACAGA TTCATATAATATCTGAAGCAATTTGAACAGATCTATAGCATTGATTTGCTAGAAATGTATCTTACTTTATTACTTTGCAG GATGTTGCTGGAAAGATTATGTCATTCGCGCAGAAGAGTCCAAGAGGAATATGTATTCTTTCTGCCAATGGTCCTATCTC TAATGTCACCCTACGCCAACCTGGTTCTTGTGGTGGCATATTGACTTATGAGGCATGTTCCTTTAGATTTATATGCTCTT TCACTATAAAAATTATTGATTGCATTTTTTCTTCTTAATGTTGATTCAATTGACTCACTCCTGGAATAATCTCATGGTCT GGCCTATTTGCTTCTTCTGATATGTAATTATGTATGGATTATGAATATTAATATGCCATATACTATAAAAGTAGGAGGTA CATATATGTTAGATGATCTCTGTTTGTGGTTGATTAATATAATTTTCTATCAAAATTACTATGATGTACTACTGAAAAGC TAAGTTCTAATATAACATTTTTATAGCCTTAAGGATTGGAATATGATGAGTAACAACTAAAAGGTTGTAGGCTTCTTCAA GTTGAGCTATCCATGTCTTGCAACAGAGAAATGCATGAAGACATTGTCATAGATTTAGGACATGATGATGTGAACCATTT ATTTGATGCATTAATTGATGCATGTCTAAGGTCAATGTCATATTTCATTTCTTGCTGTTTTGCATTTTCTTGGTTAGTGT TATAGCTCTTTTGATATTCATGCAATTATGGTAATTGATTTTTGAAATTCTTGAACAATTTTTTCATTATTCACTTTCAG GGTCGGTTTGAGATTTTATCTTTGTCTGGATCCTTCTCGGTATCTGATAGTAGTGGCATGAAAAGTCGAAGTGCTGGATT GAGCGTCTCTCTAGCTGGTCCTGATGGTCGAGTGATAGGAGGTGGTGTTGCTGGTCTGTTGACAGCTGCTGGCCCCATCC AAGTATGATATTTTCTAACATTTAGTATATGTTTGGATACATAATACACTCTCACGTTGGTAGGAGGATTGATTCTGGGT CTCTGGGAGAAGCTATTATTAGTGGGGGTGAAATTGATTCTGTAAGATTTAAACGTGAATCCAAATATGTTACTTCTAAG GATTGGTTTGATATGGGGGTGACAATTTGATGGATCAGTTTTCATGAAATTTTAATAACAATACTAACCCATGATTTTTT AGGTTTATTTTACCCCACATACCAAACTGACCCTGACTGAAATTTTTCTCTTGACAGTTTATTGCAATGATGTTATGCCA ATTGAAACTAGAACTTGCATAAGCTATTTCAAAACATAGTATATTTCTAGGAACAAATCAACAAATTAAAAAAAAGCTGC ATATATGGAATATTTACCGAAGCACAACATTCAAAACTCTGTATAGTATATTAATCAAGGCTTATCTTCTAGGTTGCTTG ACCAAAATCTGTGAACTTGCACTGTTTACCATTTGAGTTTAATGCATTTTGTTTTGTATATAATTTGGGAGAGAAAATAA TTTTGTTTTGTATTTGGTGCATTTTGAAAATAGAATAGAACAGGGCTTAATGTAAAAATTGATATATTTTTGTTCCACTA AAAGAGAGCTTAACAGAACAATCTGTTCCATTTCTTACTGTCTGTGTTCCAAATGCTATTGAAGAGTGTATCATGATTTC ATCTCTTACTGCCTGTTGGAAAATTATTTGGCAATGGTTTCAGATTGTAGTGGGAAGCTTCATGCCAAATGGTTACCTCA AGACCCATAAAAGGAAGTACCAACGTGAACATACAGTGGCATCCCCAACTTCAACTGGTCCAGAAACAGTCACAGGAGCA ACACCTATCTCACAAGCAAATAGTGATGGTGAAAACTATATGATACCTATGACTCAGTCTCAGATACCACTTCAAATCCA GAGAGAATCTGTGAGTGTTCCAAGTGATAAACAGAGCCTAGATGGCACACCTGATGCTGCTGCTAATTGGAATGGTTCAG AAGAATATTCAGATCAGAGGACATCTCCAGACATCAACATATCTTTGTCTGATGAATAGAAGTTTTTGGTACTGTTTTGT CTCATGACATGTTTCACTTTCAAGTCTATAAATAAGTCTTCTCAAATTTTATCATATTCTAACCTTTTTATTCTGTTTTC TGATGATGCAGAGGCTGACATGGTAACTGAATGAAACTAACACCAGAAGATTGTGATGACAACTAGGTTATATATTTGCC ATAATGTACAGTTGTCAGGAATTAGGAAGGATTGTTATGGCCTCAATTTTTTTATCTCACAGTTTCTGCTGAAAACTTAC AAGTTTTCTGTTTCTCATTTCTTTTTTAGTTTGGGAGTTAGGTGGTTGGGTTGATCAAAGATATTTAAGCTATATTCTGT TGGGATTTTGTTTCAGTAAGATTAGTTATATTTATTTTGCACTTTTACACATTTGGGACACTTCTCACAAGAGTGTTATG GATCCATGAAGAATTTACTGCCAAACCAATATTGCTACGATGAGTATTGTGTCATAGCTCCACATATATTGGATCGGCCT AAAATTGATGTGTTTGCTGCTTTATATTTTTGACTGAAGTTTTAGGATCATAATGGATCATTCTACAAAAATGCTGTGAA TAGTAACAATCATTAAAGTGTAGAGGGGATAAAGCTGCGCATAGTCCTATTCGTGTCCTAGAATGTATTCTCAAACTTCA TTTCACTTGGAAGAGACAATTCAATTGTTAC
CDS sequence (LotjaGi5g1v0090500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACAACCTGTAAACCTCTCAGCGCCGCCACACCCACAACCACTCATGATTAACATGAACGTGGCCAACACCACCAC GACGCCGCCAGCGACGGTGCAAACCGCCACAACAACAACAACAACAGTGGCAACAGCAGCAACAGCAACAACAACACCGG GAAGCACTGAAGGAAGCTTGGATTTGTTTGCTAAGAAGAAGAGAGGAAGACCCAGAAAATACGACGCAGATGGGAACCTG AATCCGGCGTACAAGAAGAGTGCAACGCCGCCACAGAGATTCACTCTCTCCGCAACCGCAAACGAGTTTTCTGCCAAAAG GGGTCGTGGGAAACCTGCTACTGGGTTTGGAAACTACCACCTCTTTGCTTCTTTTGGTGAGGTTTTTGCAAGCTCTGCTT CTGGGGATTTCACACCGCATGTGGTGACTGTTTATACTGGAGAGGATGTTGCTGGAAAGATTATGTCATTCGCGCAGAAG AGTCCAAGAGGAATATGTATTCTTTCTGCCAATGGTCCTATCTCTAATGTCACCCTACGCCAACCTGGTTCTTGTGGTGG CATATTGACTTATGAGGCATGTTCCTTTAGATTTATATGCTCTTTCACTATAAAAATTATTGATTGCATTTTTTCTTCTT AA
Protein sequence (LotjaGi5g1v0090500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQPVNLSAPPHPQPLMINMNVANTTTTPPATVQTATTTTTTVATAATATTTPGSTEGSLDLFAKKKRGRPRKYDADGNL NPAYKKSATPPQRFTLSATANEFSAKRGRGKPATGFGNYHLFASFGEVFASSASGDFTPHVVTVYTGEDVAGKIMSFAQK SPRGICILSANGPISNVTLRQPGSCGGILTYEACSFRFICSFTIKIIDCIFSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 193 | 163 | 5.4E-54 | – | |
| PANTHER | 31 | 193 | 163 | 5.4E-54 | ||
| MobiDBLite | 68 | 89 | 22 | - | – | |
| ProSiteProfiles | 134 | 213 | 80 | 19.47 | ||
| SUPERFAMILY | 135 | 191 | 57 | 3.4E-10 | – | |
| CDD | 138 | 184 | 47 | 2.46516E-12 | ||
| Pfam | 138 | 178 | 41 | 5.9E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi5g1v0090500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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