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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0090500 |
| Transcript ID | LotjaGi5g1v0090500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT4G12080.1 AT-hook motif nuclear-localized protein 1; Swiss-Prot: sp|Q8VYJ2|AHL1_ARATH AT-hook motif nuclear-localized protein 1; TrEMBL-Plants: tr|I3SDN1|I3SDN1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0090500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:15758227..15762248) extracted from Lotus japonicus Gifu genome v1.2.
TGCAAATTGCACAGAGAAGAGAGAAAGAGAAACAGAAAAAGAGAGAAAAAATCAGAAAAAGAAAGAAACAGTGTGAGTGT CTTGTATATGCATAATGCAATTGAATTCATAAATTTTCATTCTCTCCACCTTCTTCAAAAGAGAGCCTAAACCTTCCCTA TTCCTTCTACTTCTGGCGCCATTTGCACACTCTTGCAACCCCATCACCTTTCAAAAAACATTAATACAACCTCTTCTTCT TCTACTACACATTTCTTCAAACACCTTCCATTCATGGAACAACCTGTAAACCTCTCAGCGCCGCCACACCCACAACCACT CATGATTAACATGAACGTGGCCAACACCACCACGACGCCGCCAGCGACGGTGCAAACCGCCACAACAACAACAACAACAG TGGCAACAGCAGCAACAGCAACAACAACACCGGGAAGCACTGAAGGAAGCTTGGATTTGTTTGCTAAGAAGAAGAGAGGA AGACCCAGAAAATACGACGCAGATGGGAACCTGAATCCGGCGTACAAGAAGAGTGCAACGCCGCCACAGAGATTCACTCT CTCCGCAACCGCAAACGAGTTTTCTGCCAAAAGGGGTCGTGGGAAACCTGCTACTGGGTTTGGAAACTACCACCTCTTTG CTTCTTTTGGTGAGTGAGTGATGCGAGTTTTTGGTTGGTTTTGACTTACCCGCCAAACAAAAAAAATTGCTTCTTTTGTT TCCCCCCTTCATTTCCTTACCAGAAGAATAAATCAAGGAATCTCAAGTTTTGTACTTGATTTTTTGTTGGTCCACTGCAT CTGGGGTTGTTGGGAATTAGAAATTTTCCATTTTTGGGTTGTGGGGTTTTGGGATCCAGGTTTAAGCACAATACTAATTG CATTTTTCATTTTCAGTTTTGATGCAAATTAGTTACTTGTTTTCCCTTTTGGGTTTTTGTTTTGCTGCTGATAATGGGTA AACTGTAAGTTAGGGTTCATTTCAGTGAAAAAGGTAGGAACTTTACTTTTTGTTGCTAATTGTGTTAAGGTTCTGCATTT GTTTGAGTTTTTATTTATGGGCAGAAAATTTTTATTTTTCTGAACTTGGATTTTTGGAAATTGGCTAAATTGATTATGCT ATAATGTACATTGAGTATTTCTCTATCTGTAATCTTTGAAGGTGAGGTTTTTGCAAGCTCTGCTTCTGGGGATTTCACAC CGCATGTGGTGACTGTTTATACTGGAGAGGTAATGCAGAAACCAGCATACATTGTTAGCTTTACAGATTCATATAATATC TGAAGCAATTTGAACAGATCTATAGCATTGATTTGCTAGAAATGTATCTTACTTTATTACTTTGCAGGATGTTGCTGGAA AGATTATGTCATTCGCGCAGAAGAGTCCAAGAGGAATATGTATTCTTTCTGCCAATGGTCCTATCTCTAATGTCACCCTA CGCCAACCTGGTTCTTGTGGTGGCATATTGACTTATGAGGCATGTTCCTTTAGATTTATATGCTCTTTCACTATAAAAAT TATTGATTGCATTTTTTCTTCTTAATGTTGATTCAATTGACTCACTCCTGGAATAATCTCATGGTCTGGCCTATTTGCTT CTTCTGATATGTAATTATGTATGGATTATGAATATTAATATGCCATATACTATAAAAGTAGGAGGTACATATATGTTAGA TGATCTCTGTTTGTGGTTGATTAATATAATTTTCTATCAAAATTACTATGATGTACTACTGAAAAGCTAAGTTCTAATAT AACATTTTTATAGCCTTAAGGATTGGAATATGATGAGTAACAACTAAAAGGTTGTAGGCTTCTTCAAGTTGAGCTATCCA TGTCTTGCAACAGAGAAATGCATGAAGACATTGTCATAGATTTAGGACATGATGATGTGAACCATTTATTTGATGCATTA ATTGATGCATGTCTAAGGTCAATGTCATATTTCATTTCTTGCTGTTTTGCATTTTCTTGGTTAGTGTTATAGCTCTTTTG ATATTCATGCAATTATGGTAATTGATTTTTGAAATTCTTGAACAATTTTTTCATTATTCACTTTCAGGGTCGGTTTGAGA TTTTATCTTTGTCTGGATCCTTCTCGGTATCTGATAGTAGTGGCATGAAAAGTCGAAGTGCTGGATTGAGCGTCTCTCTA GCTGGTCCTGATGGTCGAGTGATAGGAGGTGGTGTTGCTGGTCTGTTGACAGCTGCTGGCCCCATCCAAGTATGATATTT TCTAACATTTAGTATATGTTTGGATACATAATACACTCTCACGTTGGTAGGAGGATTGATTCTGGGTCTCTGGGAGAAGC TATTATTAGTGGGGGTGAAATTGATTCTGTAAGATTTAAACGTGAATCCAAATATGTTACTTCTAAGGATTGGTTTGATA TGGGGGTGACAATTTGATGGATCAGTTTTCATGAAATTTTAATAACAATACTAACCCATGATTTTTTAGGTTTATTTTAC CCCACATACCAAACTGACCCTGACTGAAATTTTTCTCTTGACAGTTTATTGCAATGATGTTATGCCAATTGAAACTAGAA CTTGCATAAGCTATTTCAAAACATAGTATATTTCTAGGAACAAATCAACAAATTAAAAAAAAGCTGCATATATGGAATAT TTACCGAAGCACAACATTCAAAACTCTGTATAGTATATTAATCAAGGCTTATCTTCTAGGTTGCTTGACCAAAATCTGTG AACTTGCACTGTTTACCATTTGAGTTTAATGCATTTTGTTTTGTATATAATTTGGGAGAGAAAATAATTTTGTTTTGTAT TTGGTGCATTTTGAAAATAGAATAGAACAGGGCTTAATGTAAAAATTGATATATTTTTGTTCCACTAAAAGAGAGCTTAA CAGAACAATCTGTTCCATTTCTTACTGTCTGTGTTCCAAATGCTATTGAAGAGTGTATCATGATTTCATCTCTTACTGCC TGTTGGAAAATTATTTGGCAATGGTTTCAGATTGTAGTGGGAAGCTTCATGCCAAATGGTTACCTCAAGACCCATAAAAG GAAGTACCAACGTGAACATACAGTGGCATCCCCAACTTCAACTGGTCCAGAAACAGTCACAGGAGCAACACCTATCTCAC AAGCAAATAGTGATGGTGAAAACTATATGATACCTATGACTCAGTCTCAGATACCACTTCAAATCCAGAGAGAATCTGTG AGTGTTCCAAGTGATAAACAGAGCCTAGATGGCACACCTGATGCTGCTGCTAATTGGAATGGTTCAGAAGAATATTCAGA TCAGAGGACATCTCCAGACATCAACATATCTTTGTCTGATGAATAGAAGTTTTTGGTACTGTTTTGTCTCATGACATGTT TCACTTTCAAGTCTATAAATAAGTCTTCTCAAATTTTATCATATTCTAACCTTTTTATTCTGTTTTCTGATGATGCAGAG GCTGACATGGTAACTGAATGAAACTAACACCAGAAGATTGTGATGACAACTAGGTTATATATTTGCCATAATGTACAGTT GTCAGGAATTAGGAAGGATTGTTATGGCCTCAATTTTTTTATCTCACAGTTTCTGCTGAAAACTTACAAGTTTTCTGTTT CTCATTTCTTTTTTAGTTTGGGAGTTAGGTGGTTGGGTTGATCAAAGATATTTAAGCTATATTCTGTTGGGATTTTGTTT CAGTAAGATTAGTTATATTTATTTTGCACTTTTACACATTTGGGACACTTCTCACAAGAGTGTTATGGATCCATGAAGAA TTTACTGCCAAACCAATATTGCTACGATGAGTATTGTGTCATAGCTCCACATATATTGGATCGGCCTAAAATTGATGTGT TTGCTGCTTTATATTTTTGACTGAAGTTTTAGGATCATAATGGATCATTCTACAAAAATGCTGTGAATAGTAACAATCAT TAAAGTGTAGAGGGGATAAAGCTGCGCATAGTCCTATTCGTGTCCTAGAATGTATTCTCAAACTTCATTTCACTTGGAAG AGACAATTCAATTGTTACGGGC
CDS sequence (LotjaGi5g1v0090500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACAACCTGTAAACCTCTCAGCGCCGCCACACCCACAACCACTCATGATTAACATGAACGTGGCCAACACCACCAC GACGCCGCCAGCGACGGTGCAAACCGCCACAACAACAACAACAACAGTGGCAACAGCAGCAACAGCAACAACAACACCGG GAAGCACTGAAGGAAGCTTGGATTTGTTTGCTAAGAAGAAGAGAGGAAGACCCAGAAAATACGACGCAGATGGGAACCTG AATCCGGCGTACAAGAAGAGTGCAACGCCGCCACAGAGATTCACTCTCTCCGCAACCGCAAACGAGTTTTCTGCCAAAAG GGGTCGTGGGAAACCTGCTACTGGGTTTGGAAACTACCACCTCTTTGCTTCTTTTGGTGAGGTTTTTGCAAGCTCTGCTT CTGGGGATTTCACACCGCATGTGGTGACTGTTTATACTGGAGAGGATGTTGCTGGAAAGATTATGTCATTCGCGCAGAAG AGTCCAAGAGGAATATGTATTCTTTCTGCCAATGGTCCTATCTCTAATGTCACCCTACGCCAACCTGGTTCTTGTGGTGG CATATTGACTTATGAGGGTCGGTTTGAGATTTTATCTTTGTCTGGATCCTTCTCGGTATCTGATAGTAGTGGCATGAAAA GTCGAAGTGCTGGATTGAGCGTCTCTCTAGCTGGTCCTGATGGTCGAGTGATAGGAGGTGGTGTTGCTGGTCTGTTGACA GCTGCTGGCCCCATCCAAATTGTAGTGGGAAGCTTCATGCCAAATGGTTACCTCAAGACCCATAAAAGGAAGTACCAACG TGAACATACAGTGGCATCCCCAACTTCAACTGGTCCAGAAACAGTCACAGGAGCAACACCTATCTCACAAGCAAATAGTG ATGGTGAAAACTATATGATACCTATGACTCAGTCTCAGATACCACTTCAAATCCAGAGAGAATCTGTGAGTGTTCCAAGT GATAAACAGAGCCTAGATGGCACACCTGATGCTGCTGCTAATTGGAATGGTTCAGAAGAATATTCAGATCAGAGGACATC TCCAGACATCAACATATCTTTGTCTGATGAATAG
Protein sequence (LotjaGi5g1v0090500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQPVNLSAPPHPQPLMINMNVANTTTTPPATVQTATTTTTTVATAATATTTPGSTEGSLDLFAKKKRGRPRKYDADGNL NPAYKKSATPPQRFTLSATANEFSAKRGRGKPATGFGNYHLFASFGEVFASSASGDFTPHVVTVYTGEDVAGKIMSFAQK SPRGICILSANGPISNVTLRQPGSCGGILTYEGRFEILSLSGSFSVSDSSGMKSRSAGLSVSLAGPDGRVIGGGVAGLLT AAGPIQIVVGSFMPNGYLKTHKRKYQREHTVASPTSTGPETVTGATPISQANSDGENYMIPMTQSQIPLQIQRESVSVPS DKQSLDGTPDAAANWNGSEEYSDQRTSPDINISLSDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 356 | 326 | 5.1E-112 | ||
| PANTHER | 31 | 356 | 326 | 5.1E-112 | – | |
| MobiDBLite | 68 | 89 | 22 | - | – | |
| ProSiteProfiles | 134 | 277 | 144 | 38.878 | ||
| SUPERFAMILY | 135 | 263 | 129 | 4.97E-31 | – | |
| Pfam | 138 | 252 | 115 | 1.0E-26 | ||
| CDD | 138 | 252 | 115 | 1.87446E-30 | ||
| Gene3D | 138 | 269 | 132 | 6.4E-9 | – | |
| MobiDBLite | 263 | 296 | 34 | - | – | |
| MobiDBLite | 270 | 296 | 27 | - | – | |
| MobiDBLite | 315 | 357 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi5g1v0090500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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