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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0091400 |
| Transcript ID | LotjaGi5g1v0091400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor family protein; TAIR: AT5G03720.1 heat shock transcription factor A3; Swiss-Prot: sp|Q8GYY1|HSFA3_ARATH Heat stress transcription factor A-3; TrEMBL-Plants: tr|A0A072VKE1|A0A072VKE1_MEDTR Heat shock transcription factor A3; Found in the gene: LotjaGi5g1v0091400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:15976538..15979381) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAACAACCTAAAAAATATCAAAATCAAAATCAATGTCGGCGGCACACTGCTCATTCACAGTTTGCAAATTGCGAGCC CCACCATTGATTTTCAACTTCAATGGCCATACTCTTCCACCGCCATCATCAATCTACAGTCTCCACCCTTCACCGCCCTT TCACCCTTTTAAATTTCTCACCACCACCACCCCTTCACATTTTCATTCTACCCACCAAACACCCCGAAATCCCAGTGCTC ACTATGAACCCGAACGATGAAAAATCTCCGAAATTTTCATCACCTTTGGACCCCTTTGATGCTCCATCTTCGATGGAGTT CGAAACTGGAGGTGGGTCTGTTCCGGTTCCGATGGGGTGCTTGCAGGGGACCCCTGTTCCGCCATTTCTGAGCAAGACTT TTGATTTGGTTGATGAACCTTCTCTGGATCCGATCATATCGTGGGGATCCAATGGTGTTAGCTTCGTGGTGTGGGATCCT TTGGAGTTTTCTAGGCTGGTTTTGCCTCGGCATTTCAAGCATAACAACTTCTCCAGTTTTGTTCGTCAGCTCAATACTTA TGTGGGTATCATGCAGCCTCTAATGGCTAATGCAGTCTCTCTGTAACTATTTTTCTTTCTCTTTTTTGATTGTATGTAAC TAATCTCCCCCATACCCCCTTCTTGTGTACTTTTTTTTTTTTAATGTAGCTATGTTCTTTTGTTCACTATGTTCGTTGAT TTTTTTTTGTAATTGGGTTTGATGAAGATTGGCTATGTATATTTTGGTTGAACTAGTTGATGTATAAATTGGGAATGTAA CAAAAATAATTTTGAGGCATTTTGCTGGTGTATATATACTATATTGATTCTTATAATGGTTCTTGTTATGTTAAGAGATT ATTTTTCCTATGGATTTGCTGAATGTATGTATTGATGTTCTTGTTATGTTTGTGCAGGGAGGTAGAGTTCTTGTTATTAT TATTTTTTTGTTGGTTTTTCTCATTTGTTAGAGGCAGACTTGTGCTGATATTATACTCTTTGTAATTTGTAATTTGTAAT TGGTACCTTGAGATGTATTTTAATAATTATTACTAATGGAAGTGTGTAATAAGAAGATGGTTCAGAACTTCAGATGACTC CTACTGCTGGAAATGGCAACAGGAGAAATTTTTACCCTCCTGTAGAAGGAAACTCATCTTTAGCAGGTAGGGCTCAGAGT TTCTGTGGTGTGTTTGTGTGTTGCTATAATTTAGATTTTTTTACTTATGCCTAGGCAAAGCTTGTTTTTGTTTCACAGAT TGTATTCTCAATACAGCTAGCACTATCTGCTGATAATGGCTAAGTTTTGTTGTACTTAGAACACCTTGTTTTGCTTTGCT AGTTTTTCTTCTTTTTTGCCTCATCTTTCTTGCCTATTTCTGCTCCATTGATTCTCAGTTAATTTGGTGTTTGTATCCAG GGATTCCGCAAGATTGACTCTGACAAGTGGGAGTTTTTCAATGATGCTTTCCAGCGAGGGAAGAAGCAGTTGCTGAAGAA CATCCAAAGGCGCAGGACGCATCATTCTCAACAGGTTGGGAGCTATGTTGGATCTTCTTCTGATGCCGGGAAGTTCGGAG TTCAGGTTGAGATAGAAAAGCTGAGGAAGGAGAGGAGTGTGTTGATGCAAGAGGTGGTTGATTTGCAGCAACAGCAGCGA GAAACGGTTAAACATGCTGGTGAAGTGAATCAGAGGCTCCAATCTGCTGAGCAAAGGCAGAAACAAATGGTTTCTTTCTT GGCAAAGTTATTTCAAAACCCGAGCTTCTTAGCACGCCTTAAGCAGAAGAAGAAGGAACAAAGAGGTATAGAATCCCCAA GAGTGAGAAGAAAGTTTGTCAAACAGAATCCTTCAGAAACTCTCAAAGAAGACCAGATAGTGAGGTACCAACCCGATTGG GGAAATATAATCATGTCTTCTGAAACTCCTGAACTAAGTCCTGTTTCCGTTGAACATTCTCCTCACTACCTTTCACAGGA TTTAGCAAGAGAAATGAGTGTAGGTGCAGAAGATTTGACTCCTCAAGTTGAGAATATTACATCAGATGAACTTGCTGCAG CACTGCCTGAGATTATGCCAACTCCAGAAATATTTGGAGATGGACCATCTAGCTTTAGACTTGAAGATACCTTAATGAAA GGGAAAAATGTCCTGAGTCCAAATCAAGAAATTCTTCCTGGGTATTTTCTTTCCTTCCCTGAGGTTTCGGCCTCGGAGAA AGGCTTTGCTGAGTTTTCACCTCTTGAAACTGAAAGCATGATCAAGCAAGAAGACCTATGGGACCCTGAGTTCAATGTTG ATGTTGCTGCTTCTTCAAGCAGTGGGAATGAGCTTTGGGGAAATCATATGAATTATGGAGTTTCTGAATTTGGAGTCACA AGTGGTCTGTCAGAGTCAGACATGTGGGATATTGGCTTTGGAAGTTTGGGTATTGATCAGTGGCCAGTTGATGACGAAAT AGCTGTTCAGCCAAAAGAAGATAGACCTAAGAATGAATAGGGGTTCATCTGCTCCTATGCACTTGTTGCTCCTGGGGTAC TTGCTGTGTTTATAGTTCTCAGGGGCCATATTATTGAATAATTTGATTTATAATCAGTATTCATTCACCAACATTCATTC TTTCTTTTTTTTCCAATTTTTAAGACTAATTCTTTAAGTGTCAATACTTCTCTTTGTAAATTATTATGTTTTAGTTTTTG TTAGCTTCAAGTAAATCATACTTTTTCTTTCTCATAAGGTAAGATTTACACATTGTCAGGTTTGTACCGCATGAGATAGG TATCATCAAACTTCTCTTTTGAACTTAGTGCATGTTTGAAAACC
CDS sequence (LotjaGi5g1v0091400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATACTCTTCCACCGCCATCATCAATCTACAGTCTCCACCCTTCACCGCCCTTTCACCCTTTTAAATTTCTCACC ACCACCACCCCTTCACATTTTCATTCTACCCACCAAACACCCCGAAATCCCAGTGCTCACTATGAACCCGAACGATGAAA AATCTCCGAAATTTTCATCACCTTTGGACCCCTTTGATGCTCCATCTTCGATGGAGTTCGAAACTGGAGGTGGGTCTGTT CCGGTTCCGATGGGGTGCTTGCAGGGGACCCCTGTTCCGCCATTTCTGAGCAAGACTTTTGATTTGGTTGATGAACCTTC TCTGGATCCGATCATATCGTGGGGATCCAATGGTGTTAGCTTCGTGGTGTGGGATCCTTTGGAGTTTTCTAGGCTGGTTT TGCCTCGGCATTTCAAGCATAACAACTTCTCCAGTTTTGTTCGTCAGCTCAATACTTATGGATTCCGCAAGATTGACTCT GACAAGTGGGAGTTTTTCAATGATGCTTTCCAGCGAGGGAAGAAGCAGTTGCTGAAGAACATCCAAAGGCGCAGGACGCA TCATTCTCAACAGGTTGGGAGCTATGTTGGATCTTCTTCTGATGCCGGGAAGTTCGGAGTTCAGGTTGAGATAGAAAAGC TGAGGAAGGAGAGGAGTGTGTTGATGCAAGAGGTGGTTGATTTGCAGCAACAGCAGCGAGAAACGGTTAAACATGCTGGT GAAGTGAATCAGAGGCTCCAATCTGCTGAGCAAAGGCAGAAACAAATGGTTTCTTTCTTGGCAAAGTTATTTCAAAACCC GAGCTTCTTAGCACGCCTTAAGCAGAAGAAGAAGGAACAAAGAGGTATAGAATCCCCAAGAGTGAGAAGAAAGTTTGTCA AACAGAATCCTTCAGAAACTCTCAAAGAAGACCAGATAGTGAGGTACCAACCCGATTGGGGAAATATAATCATGTCTTCT GAAACTCCTGAACTAAGTCCTGTTTCCGTTGAACATTCTCCTCACTACCTTTCACAGGATTTAGCAAGAGAAATGAGTGT AGGTGCAGAAGATTTGACTCCTCAAGTTGAGAATATTACATCAGATGAACTTGCTGCAGCACTGCCTGAGATTATGCCAA CTCCAGAAATATTTGGAGATGGACCATCTAGCTTTAGACTTGAAGATACCTTAATGAAAGGGAAAAATGTCCTGAGTCCA AATCAAGAAATTCTTCCTGGGTATTTTCTTTCCTTCCCTGAGGTTTCGGCCTCGGAGAAAGGCTTTGCTGAGTTTTCACC TCTTGAAACTGAAAGCATGATCAAGCAAGAAGACCTATGGGACCCTGAGTTCAATGTTGATGTTGCTGCTTCTTCAAGCA GTGGGAATGAGCTTTGGGGAAATCATATGAATTATGGAGTTTCTGAATTTGGAGTCACAAGTGGTCTGTCAGAGTCAGAC ATGTGGGATATTGGCTTTGGAAGTTTGGGTATTGATCAGTGGCCAGTTGATGACGAAATAGCTGTTCAGCCAAAAGAAGA TAGACCTAAGAATGAATAG
Protein sequence (LotjaGi5g1v0091400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAILFHRHHQSTVSTLHRPFTLLNFSPPPPLHIFILPTKHPEIPVLTMNPNDEKSPKFSSPLDPFDAPSSMEFETGGGSV PVPMGCLQGTPVPPFLSKTFDLVDEPSLDPIISWGSNGVSFVVWDPLEFSRLVLPRHFKHNNFSSFVRQLNTYGFRKIDS DKWEFFNDAFQRGKKQLLKNIQRRRTHHSQQVGSYVGSSSDAGKFGVQVEIEKLRKERSVLMQEVVDLQQQQRETVKHAG EVNQRLQSAEQRQKQMVSFLAKLFQNPSFLARLKQKKKEQRGIESPRVRRKFVKQNPSETLKEDQIVRYQPDWGNIIMSS ETPELSPVSVEHSPHYLSQDLAREMSVGAEDLTPQVENITSDELAAALPEIMPTPEIFGDGPSSFRLEDTLMKGKNVLSP NQEILPGYFLSFPEVSASEKGFAEFSPLETESMIKQEDLWDPEFNVDVAASSSSGNELWGNHMNYGVSEFGVTSGLSESD MWDIGFGSLGIDQWPVDDEIAVQPKEDRPKNE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 60 | 464 | 405 | 7.6E-113 | – | |
| PANTHER | 60 | 464 | 405 | 7.6E-113 | ||
| Gene3D | 88 | 186 | 99 | 4.4E-37 | ||
| SUPERFAMILY | 91 | 184 | 94 | 8.84E-34 | ||
| SMART | 91 | 184 | 94 | 3.7E-54 | ||
| Pfam | 95 | 184 | 90 | 1.0E-28 | ||
| PRINTS | 95 | 118 | 24 | 5.3E-18 | ||
| PRINTS | 133 | 145 | 13 | 5.3E-18 | ||
| ProSitePatterns | 134 | 158 | 25 | - | ||
| PRINTS | 146 | 158 | 13 | 5.3E-18 | ||
| Coils | 211 | 231 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi5g1v0091400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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