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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0098200 |
| Transcript ID | LotjaGi5g1v0098200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein FAR1-RELATED SEQUENCE 3; TAIR: AT3G22170.1 far-red elongated hypocotyls 3; Swiss-Prot: sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3; TrEMBL-Plants: tr|V7BRX5|V7BRX5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0098200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:17551618..17554635) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATATAGATCTCAGGTTACCCTCTGGTGAACATGATAAAGAGGATGAAGAAACAACTACAATTGATAACATGTTGGA GGGCGAAGAAAAGTTGCATAATGGAGGCATAGACAGCAGAAATATGGTTGATGCTGGTATTGAGGTACATGCTCTAAATG GTGGAGATTTGAATTCACCCTCAGTTGATATGGTAATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGCATGGAA TTTGAGTCTCATGGGGAGGCATATTCTTTCTACCAAGAATATGCACGGTCAATGGGATTCAACACTGCAATACAAAATAG TCGCCGTTCAAAAACATCAAGAGAATTTATAGATGCAAAGTTCGCTTGTTCCAGATATGGAACAAAACGGGAGTATGACA AATCATTCAATCGACCACGTGCACGACAGAACAAGCAAGATTCTGAAAATTCAACTGGTCGAAGATCCTGTTCTAAGACT GATTGTAAAGCCAGCATGCATGTAAAAAGAAAACCAGATGGAAAATGGGTTATACATAGCTTCGTGAAGGAGCATAATCA TGAGCTCTTACCAGCCCAAGCAGTCAGTGAACAAACAAGAAGAATGTATGCTGCGATGGCTAGGCAGTTTGCTGAATACA AAACTGTGGTTGGTCTCAAGAATGAGAAGAATCCATTTGATAAAGGTCGCAATTTGGGCCTGGAGTTGGGAGAGGCTAAA CTTATGCTCGATTTTTTTATACAGATGCAAAATATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAGGATCAGCG TCTGAAAAGTTTTGTATGGATCGATGCTAAAAGTAGGCATGACTATACCAACTTTTGCGATGTAGTGTCGTTTGATACCA CCTATATTAGGAACAAGTATAAGATGCCTCTTGGTCTTTTTGTTGGAGTGAACCAGCACTACCAATTTATATTACTTGGG TGTGCCTTGATATCAGATGAAAGTGCCACAACTTTTTCCTGGCTGTTCCGGACGTGGCTGAAAGGAGTTGGTGGTCAAGC TCCGAAAGTGATAATTACTGACCATGACCAGACTTTAAAGTCAGTTATTTCAGAGATCTTTCCTAATGCTTGCCATTGTG TTTGCTTATGGCATGTATTGGGGAAGGTATCTGAAAATTTAGCTCCTGTAATTAAAAAACAAGATAATTTTATGGCAAAG TTTGAAAAGTGCATATTTAGGTCATTGACCGGTGATGACTTTGAAAAGAGATGGAGAAAAATTGTTGATAGATTTGAACT TCAAGAGGATGAATGCATGCAGTCATTGTTTGAAGATCGTAAGTTATGGGCACCAACATTCATGAGGGATGTTTTCTTAG GTGGTATGTCTACTGCACATCGATCTGAAAGTGTAAATTCCTTCTTTGACAAATATGTTCATAAGAAGACCTCTGTGCAA GATTTTGTCAAACTGTATGAAGCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCTGATTCTGATACTTGGAATAA AGTGGCGACATTAAAAACTCCTTCACCTTTAGAGAAGAGTGTTGCTGGTATTTGCACACATGCTATATTCAAAAAGATTC AAGCTGAGGTTATTGGTGCAGTTGCTTGCCATCCTAAAATTGACAGGCAGGATGAGACAATCATTGTTCACAGGGTTCAT GATATGGAAACAAATAAAGACTTCTTTGTTGTGGTGAATGAAGTAAAATCAGAGGTGTCTTGTATATGTCGCTTATTTGA ATATAAAGGTTATCTTTGTCGACATGCATTGGTGGTTCTTCAATACTCAGGCCAATCAGTGTTCCCATCTCAATATATTT TGAAACGGTGGACAAAAGATGCAAAGGTCAGGAATATAATGGGAGAAGAATCTGATCATATGCTGGCAAGGGTGCAACGA TACAATGATTTATGTCAGCGAGCACTAAAACTGAGTGAAGAGGGATCATTATCTCAAGAGAGTTATAGTCTTGCATTCCA TGCGCTGAATGAAGCACACAAAGCTTGTGTGGGTTTTAACAATTCTAGTAAGAGTCCCGCAGAAGCTGGTATGTCAGGGG CTCATGGTCAGCTTTCTACTGAAGAAGATACACAGAGTAGAAATGTGGGCAAGTCAAACAAAAAGAAGAATCCAACTAAA AAGAAAAAGGTTTGTTGTTTCTATTAACTTGACTTCTACATTTTTATGTTTTTGCTATCATGACCTCCCTTTTGAATTGC AGATGAACTCTGAGGCAGAAGTGATGACTGTTGGGGCACTAGACAACTTGCAACCAATGGTTTGCCCCCTTCTTTTAGTT AACCCCGTTCAAAGAGTGTTTGATATTCTAGTCTCAGGGTTCATGTTGGGATTTTCAATTTTTGTGAGCATAGAGGAAAA AAAGTTATGGAACATTTTAGTGGGAATGTCAACGTCGTTAAATAGATATGTGTCTGCTTGCTTGAATTCAACTTCATTTC GTTTGAAAGGAATTTTTTTTGTAGGACAAATTCAGTACAAGAGCTGCAGTAACCCTTGAAGGTTATTATGGGACGCAACA GAGTGTGCAGGGGATGGTATGATATGATACACTTAGTTCTAATATTTTCTTAGTCACGTTCAGTAAGTGAACATTTTATT TGATGGTTTGTTTAGTTGAACTTAATGGGGCCAACACGTGATGATTACTACGGAAATCAACAGACTCTACAGGGGCTGGT GAGTAGAAGAAATTGTGATTACATTTTGTTAAATATGTCTTGGCTGTGAAATAATTAATATAGAGTGTTATATGTATGTA GGGACCAATGAGTTCCATAGCAAACAGCCATGATGGTTATTATGGTGCACACCAGAACATGCCTGGTTTGGTATAGTTCA CAAAAGCTAAGGATAGTATTCTGTCCTTCTTAATGTTTCATAAATCTGACACGGTTGAAACTTGCAGGCACAGCTGGATT TTTTGCGCACTAGTTTCACCTATGGAATTCGGGTTAGTGTTGTAATTTAAACTCTTTT
CDS sequence (LotjaGi5g1v0098200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATAGATCTCAGGTTACCCTCTGGTGAACATGATAAAGAGGATGAAGAAACAACTACAATTGATAACATGTTGGA GGGCGAAGAAAAGTTGCATAATGGAGGCATAGACAGCAGAAATATGGTTGATGCTGGTATTGAGGTACATGCTCTAAATG GTGGAGATTTGAATTCACCCTCAGTTGATATGGTAATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGCATGGAA TTTGAGTCTCATGGGGAGGCATATTCTTTCTACCAAGAATATGCACGGTCAATGGGATTCAACACTGCAATACAAAATAG TCGCCGTTCAAAAACATCAAGAGAATTTATAGATGCAAAGTTCGCTTGTTCCAGATATGGAACAAAACGGGAGTATGACA AATCATTCAATCGACCACGTGCACGACAGAACAAGCAAGATTCTGAAAATTCAACTGGTCGAAGATCCTGTTCTAAGACT GATTGTAAAGCCAGCATGCATGTAAAAAGAAAACCAGATGGAAAATGGGTTATACATAGCTTCGTGAAGGAGCATAATCA TGAGCTCTTACCAGCCCAAGCAGTCAGTGAACAAACAAGAAGAATGTATGCTGCGATGGCTAGGCAGTTTGCTGAATACA AAACTGTGGTTGGTCTCAAGAATGAGAAGAATCCATTTGATAAAGGTCGCAATTTGGGCCTGGAGTTGGGAGAGGCTAAA CTTATGCTCGATTTTTTTATACAGATGCAAAATATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAGGATCAGCG TCTGAAAAGTTTTGTATGGATCGATGCTAAAAGTAGGCATGACTATACCAACTTTTGCGATGTAGTGTCGTTTGATACCA CCTATATTAGGAACAAGTATAAGATGCCTCTTGGTCTTTTTGTTGGAGTGAACCAGCACTACCAATTTATATTACTTGGG TGTGCCTTGATATCAGATGAAAGTGCCACAACTTTTTCCTGGCTGTTCCGGACGTGGCTGAAAGGAGTTGGTGGTCAAGC TCCGAAAGTGATAATTACTGACCATGACCAGACTTTAAAGTCAGTTATTTCAGAGATCTTTCCTAATGCTTGCCATTGTG TTTGCTTATGGCATGTATTGGGGAAGGTATCTGAAAATTTAGCTCCTGTAATTAAAAAACAAGATAATTTTATGGCAAAG TTTGAAAAGTGCATATTTAGGTCATTGACCGGTGATGACTTTGAAAAGAGATGGAGAAAAATTGTTGATAGATTTGAACT TCAAGAGGATGAATGCATGCAGTCATTGTTTGAAGATCGTAAGTTATGGGCACCAACATTCATGAGGGATGTTTTCTTAG GTGGTATGTCTACTGCACATCGATCTGAAAGTGTAAATTCCTTCTTTGACAAATATGTTCATAAGAAGACCTCTGTGCAA GATTTTGTCAAACTGTATGAAGCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCTGATTCTGATACTTGGAATAA AGTGGCGACATTAAAAACTCCTTCACCTTTAGAGAAGAGTGTTGCTGGTATTTGCACACATGCTATATTCAAAAAGATTC AAGCTGAGGTTATTGGTGCAGTTGCTTGCCATCCTAAAATTGACAGGCAGGATGAGACAATCATTGTTCACAGGGTTCAT GATATGGAAACAAATAAAGACTTCTTTGTTGTGGTGAATGAAGTAAAATCAGAGGTGTCTTGTATATGTCGCTTATTTGA ATATAAAGGTTATCTTTGTCGACATGCATTGGTGGTTCTTCAATACTCAGGCCAATCAGTGTTCCCATCTCAATATATTT TGAAACGGTGGACAAAAGATGCAAAGGTCAGGAATATAATGGGAGAAGAATCTGATCATATGCTGGCAAGGGTGCAACGA TACAATGATTTATGTCAGCGAGCACTAAAACTGAGTGAAGAGGGATCATTATCTCAAGAGAGTTATAGTCTTGCATTCCA TGCGCTGAATGAAGCACACAAAGCTTGTGTGGGTTTTAACAATTCTAGTAAGAGTCCCGCAGAAGCTGGTATGTCAGGGG CTCATGGTCAGCTTTCTACTGAAGAAGATACACAGAGTAGAAATGTGGGCAAGTCAAACAAAAAGAAGAATCCAACTAAA AAGAAAAAGATGAACTCTGAGGCAGAAGTGATGACTGTTGGGGCACTAGACAACTTGCAACCAATGGACAAATTCAGTAC AAGAGCTGCAGTAACCCTTGAAGGTTATTATGGGACGCAACAGAGTGTGCAGGGGATGTTGAACTTAATGGGGCCAACAC GTGATGATTACTACGGAAATCAACAGACTCTACAGGGGCTGGGACCAATGAGTTCCATAGCAAACAGCCATGATGGTTAT TATGGTGCACACCAGAACATGCCTGGTTTGGCACAGCTGGATTTTTTGCGCACTAGTTTCACCTATGGAATTCGGGTTAG TGTTGTAATTTAA
Protein sequence (LotjaGi5g1v0098200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIDLRLPSGEHDKEDEETTTIDNMLEGEEKLHNGGIDSRNMVDAGIEVHALNGGDLNSPSVDMVMFKEDTNLEPLSGME FESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKT DCKASMHVKRKPDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLGLELGEAK LMLDFFIQMQNMNSNFFYAVDLGEDQRLKSFVWIDAKSRHDYTNFCDVVSFDTTYIRNKYKMPLGLFVGVNQHYQFILLG CALISDESATTFSWLFRTWLKGVGGQAPKVIITDHDQTLKSVISEIFPNACHCVCLWHVLGKVSENLAPVIKKQDNFMAK FEKCIFRSLTGDDFEKRWRKIVDRFELQEDECMQSLFEDRKLWAPTFMRDVFLGGMSTAHRSESVNSFFDKYVHKKTSVQ DFVKLYEAILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGICTHAIFKKIQAEVIGAVACHPKIDRQDETIIVHRVH DMETNKDFFVVVNEVKSEVSCICRLFEYKGYLCRHALVVLQYSGQSVFPSQYILKRWTKDAKVRNIMGEESDHMLARVQR YNDLCQRALKLSEEGSLSQESYSLAFHALNEAHKACVGFNNSSKSPAEAGMSGAHGQLSTEEDTQSRNVGKSNKKKNPTK KKKMNSEAEVMTVGALDNLQPMDKFSTRAAVTLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPMSSIANSHDGY YGAHQNMPGLAQLDFLRTSFTYGIRVSVVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 782 | 781 | 0.0 | – | |
| PANTHER | 2 | 782 | 781 | 0.0 | ||
| Pfam | 89 | 191 | 103 | 2.0E-27 | ||
| MobiDBLite | 132 | 164 | 33 | - | – | |
| Pfam | 288 | 379 | 92 | 1.4E-27 | ||
| ProSiteProfiles | 568 | 604 | 37 | 9.705 | ||
| Pfam | 569 | 602 | 34 | 7.8E-6 | ||
| SMART | 579 | 606 | 28 | 4.6E-8 | ||
| MobiDBLite | 686 | 727 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0098200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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