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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0099800 |
| Transcript ID | LotjaGi5g1v0099800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT2G36100.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DI57|CASP5_LOTJA Casparian strip membrane protein 5; TrEMBL-Plants: tr|A0A151U3S8|A0A151U3S8_CAJCA CASP-like protein; Found in the gene: LotjaGi5g1v0099800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:17990518..17992126) extracted from Lotus japonicus Gifu genome v1.2.
CTCAATATAAGTTTCAATCATCAAGAAACATTTGCATTGTCCAGTTTCATCAATTCATATAGTCTTCTAGTACATACTTA GAATACAAGCCTCTTCTCTCATTTTCAAAGCCAAATATGTCAACTACTATTGATATGCCTGGGTCAAGCAAAGCTGCTAA AGCTGGAAAACCTGTTTTAGTTACAACACCGTCAAGGCCAGGAGGATGGAAGAAAGGGGTAGCCATAATGGACTTCATAC TGAGGTTAGGTGCCATAGCTGCTGCTCTGGGTGCCGCCGCCACCATGGGATTAAGTGATCAAACTCTCCCTTTCTTCACT CAGTTCTTTCAGTTTGAAGCTAGCTACGATAGCTTTACTACCTTTCAGTATGTGACCTTCAAAATATTAATCATGGAAGT TCTATTTAGTGAAATGAGAAAAACTAATGCTAATTAATAATCAAAATGCAGGTTTTTTGTTATTACAATGGCATTGGTGG CTGGATACCTGGTCCTATCCCTTCCTTTGTCTATAGTAGCTATTGTGCGCCCTCATGCAGCTGGACCAAGGCTTTTCCTC ATCATCCTAGACACTGTAAGCTCTCCAACCTTTAATTTTGTCAGTAACCAATATGAATCTTATAAGATATAGGTCAAGCT TCTACTAGCGTGTCAGCTTCTATCTTTCTTCAAAATCAATTATGGCACCAAGAAGTTACTATCAAAACTTATCTCCTTTC CAAACATACACATTATTTAACAAATGAAACACTTCTATGACAAAATAATGATACATAAGGTTTTTGTACTAAATCCTTTC CCCTCATTTGGTCTCTCGTTCTATGTCCTTACAATTAAATTGTGTAATGTAATTTAAAAGCCGTTCATGTAAGGTAATAA TTGTCGTACTCATATCTACATGACACAATTTGATTGTTGGGACACACAAGGGAACACTAAATGAGGATTTAAGATCTCCC TCCAAGGTTTTTAAATTCTGTGCAAAATTTTGACCGCAATTTAAAACCATGAATGACAAAAGATGTTACTAGATTTTTTG GCTGTACACAACTCTATAATATATGTTGGCATTGTTTATCTGTTGATTTTGTGTGTTCAATTTTAGGTGTTTCTTACTCT AGCCACTGCTAGTGGTGCTTCAGCTGCTTCAATAGTTTACTTAGCACACAACGGCAATCAGGACACCAACTGGATAGCCA TCTGCAACCAATTTGGTGACTTCTGCGCGCAGACCAGTGGAGCTGTCGTCTCATCGCTCGTTGCTGTCCTTGTCTTTGTA TTGTTGATTGTCATGTCTGCTCTCGTTCTTGGGAAGAAGCATTGAAAATTCAGATGCAGGGGCTTGGCTAATTATGTGTG TTATTATTGTGAATGTAACTTAATCTGTTTCCTAAATCTCCTATGGTTGTGAAGGTTTCCTTGAACATGATGTGCCTATT TGAAATTAATGCAATGTTTCATTTGGTCAGATCATGGAATTTGCCTATTTTTATAACATATTTTATGTAATTTTGAAGTG CCCTTCTAATTTTTTCTTTCCAGTTCTTTTCTCAACTTCTCAGCCCTGTTTTTATTTGTTCCTCTTTATTATCCGGGAAA CTTGTGAAA
CDS sequence (LotjaGi5g1v0099800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACTACTATTGATATGCCTGGGTCAAGCAAAGCTGCTAAAGCTGGAAAACCTGTTTTAGTTACAACACCGTCAAG GCCAGGAGGATGGAAGAAAGGGGTAGCCATAATGGACTTCATACTGAGGTTAGGTGCCATAGCTGCTGCTCTGGGTGCCG CCGCCACCATGGGATTAAGTGATCAAACTCTCCCTTTCTTCACTCAGTTCTTTCAGTTTGAAGCTAGCTACGATAGCTTT ACTACCTTTCAGTTTTTTGTTATTACAATGGCATTGGTGGCTGGATACCTGGTCCTATCCCTTCCTTTGTCTATAGTAGC TATTGTGCGCCCTCATGCAGCTGGACCAAGGCTTTTCCTCATCATCCTAGACACTGTGTTTCTTACTCTAGCCACTGCTA GTGGTGCTTCAGCTGCTTCAATAGTTTACTTAGCACACAACGGCAATCAGGACACCAACTGGATAGCCATCTGCAACCAA TTTGGTGACTTCTGCGCGCAGACCAGTGGAGCTGTCGTCTCATCGCTCGTTGCTGTCCTTGTCTTTGTATTGTTGATTGT CATGTCTGCTCTCGTTCTTGGGAAGAAGCATTGA
Protein sequence (LotjaGi5g1v0099800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTTIDMPGSSKAAKAGKPVLVTTPSRPGGWKKGVAIMDFILRLGAIAAALGAAATMGLSDQTLPFFTQFFQFEASYDSF TTFQFFVITMALVAGYLVLSLPLSIVAIVRPHAAGPRLFLIILDTVFLTLATASGASAASIVYLAHNGNQDTNWIAICNQ FGDFCAQTSGAVVSSLVAVLVFVLLIVMSALVLGKKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 39 | 39 | - | – | |
| PANTHER | 16 | 195 | 180 | 6.7E-97 | – | |
| PANTHER | 16 | 195 | 180 | 6.7E-97 | – | |
| Pfam | 33 | 181 | 149 | 1.8E-42 | ||
| TIGRFAM | 40 | 191 | 152 | 6.6E-38 | ||
| TMHMM | 40 | 59 | 20 | - | – | |
| Phobius | 40 | 60 | 21 | - | – | |
| Phobius | 61 | 79 | 19 | - | – | |
| Phobius | 80 | 106 | 27 | - | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| Phobius | 107 | 117 | 11 | - | – | |
| Phobius | 118 | 145 | 28 | - | – | |
| TMHMM | 119 | 141 | 23 | - | – | |
| Phobius | 146 | 170 | 25 | - | – | |
| TMHMM | 171 | 193 | 23 | - | – | |
| Phobius | 171 | 193 | 23 | - | – | |
| Phobius | 194 | 197 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0099800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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