Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0100000 |
| Transcript ID | LotjaGi5g1v0100000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT2G36100.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DI40|CASP1_VIGUN Casparian strip membrane protein 1; TrEMBL-Plants: tr|A0A151U3S8|A0A151U3S8_CAJCA CASP-like protein; Found in the gene: LotjaGi5g1v0100000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:18029914..18031205) extracted from Lotus japonicus Gifu genome v1.2.
CCATATTCTCTCTATAAAAGCTTCTACCAATTAAACATCTCCATCATCACCAGGTCTTATATTTTCATACATATATGCAG TTTCAAATATATTTTCAATACAATAGAAAGCTTCTTCTCTCAAGTTTCTAAAGCTAAAAATGTCGACCACCATTGATGTT CCAGAATCAAGTAAAGCTGCTAAAGCTGTTTCAGTTGCAACCCCAATAAGGCCAGGAGGATGGAAGAAAGGGATAGCCAT AGTGGACTTTGTTCTAAGGTTAGGTGCAATAGCTGCAGCTCTAGGTGCTGCTACCACAATGGCAACAGCCGATCAGACCC TCCCCTTCTTCACTCAGTTCTTTCAGTTCGAAGCTAGTTATGATAGCTTTACTACCTTCCAGTACGTATAACACTGAAGG CTCTATCTTTCTTTATTTAATTATACGAAAATGATTGATTCGTGTACCATTATTTTGTGGTAGACACTCATATACCTACA ATTTAATTATAGATGTTTGGTGTCTGTCACAAAATGATGGTACACAAACAAGCACGGTTATTTACAAGAAAAGTGAATGC TTAGTTATCAAATGAATGCAGGTTTTTCGTGATTACAATGGCATTGGTGGGTGGCTACCTAGTCCTTTCCCTGCCTTTGT CTATAGTAACCATCATCCGTCCTTATGCTGTTGGACCAAGGCTTTTCCTCATCATCCTAGACACTGTAATTATATATCAT CCATTCATCCCTAACCATTCAGCTCTTTCTAGGTGTACATTAATTTATCGCATTGACATATTGAAATTAAAATTTTCTTG TACGTTTTTGTTTATAAATTTGTAGGTGTTTCTGACTTTGGCAACTGCTAGTGCTGCTTCTGCTGCTGCGGTGGTTTACG TGGCTCACAACGGCAATCAAGACTCCAACTGGCTTGCCATCTGCAATCAGTTTGGAGATTTCTGTGCGCAAACCAGTGGA GCTGTCGTGTCATCACTCGTTGCGGTGGTTGTCCTCGTCTTGTTGATTGTTATGTCTGCTTTGGCTCTTGGAAAACATTA ATTAGGATCTTTTGATCGATTCAATCATATGCAGGGGCTTAAGTTGCCTGTATTTTATGTTGTTATGTTTGGTTTTGTTT GTTGGGGTGTTCCACAAGTTTTCTCAGGTGCATTAATTTTCTTTTTTTATCTTGTTGGGTTACCGGTGGGCAAAGTGTCC CAACGTTGATTTCCTTTTATGAATTACTGAAATGTAAATTAAATTGGTTGCTCGCACTAATTTTGAAATCACTAAAGACA TTTAAGATTTCC
CDS sequence (LotjaGi5g1v0100000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGACCACCATTGATGTTCCAGAATCAAGTAAAGCTGCTAAAGCTGTTTCAGTTGCAACCCCAATAAGGCCAGGAGG ATGGAAGAAAGGGATAGCCATAGTGGACTTTGTTCTAAGGTTAGGTGCAATAGCTGCAGCTCTAGGTGCTGCTACCACAA TGGCAACAGCCGATCAGACCCTCCCCTTCTTCACTCAGTTCTTTCAGTTCGAAGCTAGTTATGATAGCTTTACTACCTTC CAGTTTTTCGTGATTACAATGGCATTGGTGGGTGGCTACCTAGTCCTTTCCCTGCCTTTGTCTATAGTAACCATCATCCG TCCTTATGCTGTTGGACCAAGGCTTTTCCTCATCATCCTAGACACTGTGTTTCTGACTTTGGCAACTGCTAGTGCTGCTT CTGCTGCTGCGGTGGTTTACGTGGCTCACAACGGCAATCAAGACTCCAACTGGCTTGCCATCTGCAATCAGTTTGGAGAT TTCTGTGCGCAAACCAGTGGAGCTGTCGTGTCATCACTCGTTGCGGTGGTTGTCCTCGTCTTGTTGATTGTTATGTCTGC TTTGGCTCTTGGAAAACATTAA
Protein sequence (LotjaGi5g1v0100000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTTIDVPESSKAAKAVSVATPIRPGGWKKGIAIVDFVLRLGAIAAALGAATTMATADQTLPFFTQFFQFEASYDSFTTF QFFVITMALVGGYLVLSLPLSIVTIIRPYAVGPRLFLIILDTVFLTLATASAASAAAVVYVAHNGNQDSNWLAICNQFGD FCAQTSGAVVSSLVAVVVLVLLIVMSALALGKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | - | – | |
| PANTHER | 14 | 193 | 180 | 2.0E-96 | – | |
| PANTHER | 14 | 193 | 180 | 2.0E-96 | – | |
| Pfam | 30 | 178 | 149 | 1.4E-41 | ||
| TIGRFAM | 37 | 189 | 153 | 1.4E-39 | ||
| Phobius | 37 | 57 | 21 | - | – | |
| TMHMM | 38 | 60 | 23 | - | – | |
| Phobius | 58 | 76 | 19 | - | – | |
| Phobius | 77 | 103 | 27 | - | – | |
| TMHMM | 80 | 102 | 23 | - | – | |
| Phobius | 104 | 114 | 11 | - | – | |
| TMHMM | 115 | 137 | 23 | - | – | |
| Phobius | 115 | 142 | 28 | - | – | |
| Phobius | 143 | 167 | 25 | - | – | |
| TMHMM | 168 | 190 | 23 | - | – | |
| Phobius | 168 | 190 | 23 | - | – | |
| Phobius | 191 | 193 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0100000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…