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LotjaGi5g1v0101300.1

Overview

Field Value
Gene ID LotjaGi5g1v0101300
Transcript ID LotjaGi5g1v0101300.1
Lotus japonicus genome version Gifu v1.2
Description Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9; TrEMBL-Plants: tr|A0A0L9U8M9|A0A0L9U8M9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0101300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:18223895..18228294) extracted from Lotus japonicus Gifu genome v1.2.

AATTGAAAGTTTCCGATCTTCAAAATCATGCTGCCATCAAAGCCTCAATCTCTGATCGTCAAGCGATCGGTGTGGTCTTC CAACCTTGAATCGGAGTTTGAATTGATTCGCTCAATCATTGATTCATACCCTTTCATCTCCATGGACACAGAGTTTCCCG GCATTGTCTTCCGCCCAAAGACCGGTGGCGGAGCTGAAACTTGGCACCGATCGCCGGAGGATCACTACAGCGTGTTGAAA TCGAATGTGAACCGCCTGAATCTGATCCAGGTCGGTGTGACTCTCTCTGATCGCGATGGAAATCTTCCGAATCTTGGAAC ATTGCAGCAATTCCTTTGGGAATTCAATTTCAGCGATTTCAATGTCAAGACTGATCTCCAGGCTCCAGATTCTATTGTGC TTCTTCGTACTCAGGGCATTGATTTTGAGGAGAACAACAAATCAGGGATCAAAATTGTGCGTTTCGCCGAGCTCATGATG TCTTCTGGGCTTGTGTGCAATCCAAATGTTAGCTGGATTACCTTTCATGGTGCGTATGATTTTGGGTATCTAGTGAAGGC GCTAACACATCGTGCTTTGCCAGAATGCTTAGCTGATTTCCTGTTGCTGGTTAGGGTTTTCTTTGGTGATAGAGTGATTG ATGTGAAACATTTGATGAAGTTTTGCTCTGGACTCTATGGCGGATTGAATAACGTTTCTAAGAAACTGGATGTGAAGAGG GTTGTTGGGAAGAGCCACCAGGCTGGTTCAGACAGTTTGCTGACTATGCATGCTTTTGAAAAGATCAGAAAGGTTTATTT TGACAACAAAGATGATGGGCTGGTCAAGTTTGCTGGTGTCTTGCATGGCTTAGAGGTTTAAAATACCCCAAATGGGTTAT AATTTCTCTATTGTTTTCATTATTGACTTTTCTTTTTATTCTCAATATTGATGACATTTGTTTATGAATGAGATTAGGTT TATACATTCTTTGAATTCTATGCCCTTGCAACTCTTTTCCCTCTGTCTTTTAGTTCTTTTACTAGTTAAGAAATAGAGTT TTTGAAAATAATAAGAGTGAGTGTGATATACTACTACAAAATGTGAATTTACTAATAATCTGTTCATCTGTTGAGTTAGA ATATGGTATTAAATATTTGGTTTGGTGAGACTTTCTAGGTTGATTTGAGGAATGCTTTATATTTTGCTTCTATTGATTAG GTATTATAAGTTCTTGTGGTTTTTTGCTTGAAAGGAGGAACTGAACTGATAATTTTCAAGCTGGGGGTGCTAAGTAGGGA TTAAGAACTTCTATCTTCGTTTGGTCTCTCTGATGGCCTCTTTGGACATAAATCTGATTTGCATGAGTATTTGTATTGGT TGTGACTCAGACTTGTATTTGTGGAGTGGAATTGAATAAAAACGAAAATGAAAATGAAAAAAGAAAAGGATGATGGAATT GAAATGATCAAGGGTTGGAAATAGAGAGTGTTGAATGATTTTCAGAAGTTGAAATGGAGAGTAGGGCCTCCACCTTTGAG AAGGATAAGCCTTTGGGAGTGAAGATCGCACAAGAAAAGCTTCTTGATAAGATCAATAGCTAGATTCAATCCAGAACCCA AGAGTATGAAAACTCAAAATTATATTGTCAAAATCTGATCATTACAATGGTGTGAAGTTCCCTTTATAGGAGAAAATTCA GGCTAGGGTAAGTTTTGATCAAAGTAACTCTATCAATGGGGGAATCCTATGCTGAAAATTACACAAATCAAATGGATGAA TTCTTGTGTTTTTTATCAACTTAAGTGTGCCATTAGTGTGCTGAAACTCCCTAGGTGAATGCTCTTGATGACTAGAAAAC ATCACATTTACTGCTCTTAATGCAGTTTTATTCCCCTTGTCTTGTAACTCCTCCTTTGACCTTGAAATGCTTTTATCTTT CTTGTCTCTTAGCTTATCCAATTTCAATCAGCTCTTTACTCTGAATTATTCCTCCTTGGAAACCATTGAACTTATTTGAA AACACACATAGTTGTAGAAGAAGTATGGGCCCCTCTCTTTCACTCTTATGCACGTACCAACCACTTAAAGTGGATTAAAA ACACAAAAAATAAAACACATAATTCATAACATAGTGAATTTGGTCCCAACTAAATAAATTGGTAATTTGCACATTTATAT GCAAGTGGGTCTGGCTTCCATTCTTGTGCTTGAATGACCATCATGGGTTTTGGTGCAGCCATGTCTCTTGATATCCAAGT GTCTTAGTCATGAATTGGACTAAGCTTTCTTGATGCTTCCTTGCCATAGACCTGGTCATTAGTCTTCCTAAGCTTTGGAT AACTTCTAGTTGTTCTTGATCCTCATCACTCCCCCCCTCTTGAAGAGAATTCGACCTTGAATTGAAATCTTCATCACCTA ACTCAAAATGAGTCAAATCAGCAACATTGAAAGTAGCTCTTACACCATACTCACCTGGCAGATCAATTTTGTAAGCATTA TCATTCACTTTGGCTACTACTTGAAAATTTCCATCTCCCCTTGGAAATAGCTTAGACTTCCTTTGAGTGGGAAACCTTTC TTTCCTCATATGAATCCATACCCAATCTTCATGTTCAAAAGTAACCTTCTTACGCCCCTTATTGGCACTTTTGGCATAAC TTTCATTTTTCTTTTCAATTTACAATCTGATTGTTCATACAATTTTCTTACAAATTCATCTTTAGCTTTGCCCTCCTCAT GTTTTATCAAAGATCTGTTGGGCATTGGTAAAAGATCAAGCGGATTTAAAGGATTAAATCCATAAACAATTTCATATGGG GAATGCTTTGTGGTGCTATGGACAACCCTATTATAAGCAATTTCAACATGGGGCAGTCATGTTTCCCATGTTTTCAAATT CTCTGCAAGTAAAACCCTGAGAAGAGTAGACAGAGTTTTGTTTACATACTACAATTTTAAATAAAATAAAAAAGATTAAA ACTAAAGCTGAAAAATCCAATCCTAACCGTTGTGAGTTGAATCATATCAAACCTGAGTTGAATATGAAGGCATATCCATT AAATGAAAATAGAAACCGATGAGATTCAATAAGATAAATATTCCCTCAAAAACTGATCTTATCCAATAAAAGAACATCCT TCCATATTGCATAATCCTTTGGGAAGAGTTTGGAAAAAAAATCCTCCAAAAAATTACTCTAATTTATATAATATAAGAAG TATTGAGCCGGTGTACCGGATAATATAGTAAGTATTGATATTAGTAGGGAAAAAAATTTAAAGAATAACCATCTAATAAC ACTTTCCAAATAGGATTATTATTTTTATCATCGCAATACTTAGTATACTAAATTACTAATATATTTTCCAACAAAAAAAT AACTAATACATTTAAATCCCTCAACCTCTCTACTTTTATGTCTTCTTGCATTCGTGAAAACCTAGAATTGAAAGTTTCCG ATCTTCAAAATCATGCTGCCATCAAAGCCTCAATCTCTGATCGTCAAGCGATCGGTGTGGTCTTCCAACCTTGAATCGGA GTTTGAATTGATTCGCTCAATCATTGATTCATACCCTTTCATCTCCATGGACACAGAGTTTCCCGGCATTGTCTTCCGCC CAAAGACCGGTGGCGGAGCTGAAACTTGGCACCGATCGCCGGAGGATCACTACAGCGTGTTGAAATCGAATGTGAACCGC CTGAATCTGATCCAGGTCGGTGTGACTCTCTCTGATCGCGATGGAAATCTTCCGAATCTTGGAACATTGCAGCAATTCCT TTGGGAATTCAATTTCAGCGATTTCAATGTCAAGACTGATCTCCAGGCTCCAGATTCTATTGTGCTTCTTCGTACTCAGG GCATTGATTTTGAGGAGAACAACAAATCAGGGATCAAAATTGTGCGTTTCGCCGAGCTCATGATGTCTTCTGGGCTTGTG TGCAATCCAAATGTTAGCTGGATTACCTTTCATGGTGCGTATGATTTTGGGTATCTAGTGAAGGCGCTAACACATCGTGC TTTGCCAGAATGCTTAGCTGATTTCCTGTTGCTGGTTAGGGTTTTCTTTGGTGATAGAGTGATTGATGTGAAACATTTGA TGAAGTTTTGCTCTGGACTCTATGGCGGATTGAATAACGTTTCTAAGAAACTGGATGTGAAGAGGGTTGTTGGGAAGAGC CACCAGGCTGGTTCAGACAGTTTGCTGACTATGCATGCTTTTGAAAAGATCAGAAAGGTTTATTTTGACAACAAAGATGA TGGGCTGGTCAAGTTTGCTGGTGTCTTGCATGGCTTAGAGGTTTAAAATACCCCAAATGGGTTATAATTTCTCTATTGTT TTCATTATTGACTTTTCTTTTTATTCTCAATATTGATGACATTTGTTTATGAATGAGATTAGGTTTATACATTCTTTGAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0101300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGCCATCAAAGCCTCAATCTCTGATCGTCAAGCGATCGGTGTGGTCTTCCAACCTTGAATCGGAGTTTGAATTGAT TCGCTCAATCATTGATTCATACCCTTTCATCTCCATGGACACAGAGTTTCCCGGCATTGTCTTCCGCCCAAAGACCGGTG GCGGAGCTGAAACTTGGCACCGATCGCCGGAGGATCACTACAGCGTGTTGAAATCGAATGTGAACCGCCTGAATCTGATC CAGGTCGGTGTGACTCTCTCTGATCGCGATGGAAATCTTCCGAATCTTGGAACATTGCAGCAATTCCTTTGGGAATTCAA TTTCAGCGATTTCAATGTCAAGACTGATCTCCAGGCTCCAGATTCTATTGTGCTTCTTCGTACTCAGGGCATTGATTTTG AGGAGAACAACAAATCAGGGATCAAAATTGTGCGTTTCGCCGAGCTCATGATGTCTTCTGGGCTTGTGTGCAATCCAAAT GTTAGCTGGATTACCTTTCATGGTGCGTATGATTTTGGGTATCTAGTGAAGGCGCTAACACATCGTGCTTTGCCAGAATG CTTAGCTGATTTCCTGTTGCTGGTTAGGGTTTTCTTTGGTGATAGAGTGATTGATGTGAAACATTTGATGAAGTTTTGCT CTGGACTCTATGGCGGATTGAATAACGTTTCTAAGAAACTGGATGTGAAGAGGGTTGTTGGGAAGAGCCACCAGGCTGGT TCAGACAGTTTGCTGACTATGCATGCTTTTGAAAAGATCAGAAAGGTTTATTTTGACAACAAAGATGATGGGCTGGTCAA GTTTGCTGGTGTCTTGCATGGCTTAGAGGTTTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0101300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLPSKPQSLIVKRSVWSSNLESEFELIRSIIDSYPFISMDTEFPGIVFRPKTGGGAETWHRSPEDHYSVLKSNVNRLNLI QVGVTLSDRDGNLPNLGTLQQFLWEFNFSDFNVKTDLQAPDSIVLLRTQGIDFEENNKSGIKIVRFAELMMSSGLVCNPN VSWITFHGAYDFGYLVKALTHRALPECLADFLLLVRVFFGDRVIDVKHLMKFCSGLYGGLNNVSKKLDVKRVVGKSHQAG SDSLLTMHAFEKIRKVYFDNKDDGLVKFAGVLHGLEV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10797:SF10
6 277 272 7.4E-133 –
SUPERFAMILY
SSF53098
6 275 270 1.18E-75
IPR012337
PANTHER
PTHR10797
6 277 272 7.4E-133
IPR039637
Gene3D
G3DSA:3.30.420.10
12 275 264 8.6E-99
IPR036397
Pfam
PF04857
15 142 128 5.9E-11
IPR006941

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004535
Molecular function Poly(A)-specific ribonuclease activity Catalysis of the exonucleolytic cleavage of poly(A) to 5'-AMP.
Subterm of
GO:0030014
Cellular component CCR4-NOT complex The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0101300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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