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LotjaGi5g1v0102000.1

Overview

Field Value
Gene ID LotjaGi5g1v0102000
Transcript ID LotjaGi5g1v0102000.1
Lotus japonicus genome version Gifu v1.2
Description Phenylalanine ammonia-lyase; TAIR: AT2G37040.1 PHE ammonia lyase 1; Swiss-Prot: sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1; TrEMBL-Plants: tr|A0PBZ5|A0PBZ5_LOTJA Phenylalanine ammonia-lyase; Found in the gene: LotjaGi5g1v0102000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:18399271..18401765) extracted from Lotus japonicus Gifu genome v1.2.

GGAAATTCAAAGCTCCCTCAAATATTTCTACATTCAACACAAAACAATCTCTCCCACATAAGCCAGCTCCAATTTTGTTA CAGATATTCAATCTTTCAAAGTGAAATATTAATCAGTTTGCATTATTAAGATGGCAGCAGCAACCCCCAATGGCCACAAC CAAAGCCACAACGGTTCCTTTTTCTGAACTGCTAAAGGCGGTAGTGATCCATTGAATTGGGGTATGGCAGCAGAGTCAAT GAAGGGGAGCCACCTTGACGAGGTCAAGCGCATGGTGGCAGAGTACCGGAAGCCGGTGGTCCGGCTGGGCGGAGAGACGC TGACCATAGCTCAGGTGGCTGCTGTTGCAGCACATGACCAGCACCATGGTGTGAGCGTTGAGCTGTGCGAGTCCGCTAGA GCTGGCGTTAAGGCGAGCAGTGACTGGGTGATGAATAGCATGAACAATGGAACTGACAGTTACGGCGTCACCACCGGTTT TGGCGCCACCTCCCATCGCAGAACCAATCAAGGCAATGCTTTGCAGCAAGAACTCATCAGGTACTAACTCAACTCCACAC ACGTAACTAACTACTAGCTAACTAGCTACCTGTTTAGTTTCCATCCACTTCCTATATTTGCTTAAATTGCTAAGTTTTAT ACATTCTTGTTATTCAGGTTTTTGAATGCCGGAATATTTGGCAATGGTACCGAGTCAAGCCACACGCTGCCACAACCTGC AACTAGAGCAGCAATGCTGGTGAGGATCAACACTCTTCTCCAAGGTTACTCAGGAATTAGATTTGAAATCCTAGAAGCCA TCACCAAGCTGCTTAACAACAGCATCACACCATGTTTACCGCTTCGTGGTACCGTCACAGCTTCTGGTGATCTGGTCCCT CTTTCTTACATTGCTGGCTTGCTTACTGGCCGACAAAACTCCAAAGCCGTTGGACCTTCTGGAGAGGTACTTAATGCCAA GGAAGCTTTCCAATTGGCTAGCATCGACTCGGGGTTCTTTGAATTGCAGCCTAAGGAAGGGCTTGCCCTTGTTAATGGCA CTGCTGTTGGTTCTGGGTTAGCTTCTATTGTTCTCTTTGAGGCTAACATATTGGCTATACTGGCTGAAGTTCTATCAGCT ATTTTTGCCGAAGTGATGCAAGGGAAACCTGAATTTACCGACCATTTGACACATAAGCTAAAGCACCACCCTGGACAAAT TGAGGCTGCTGCAATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAGCAGCAAAGAAGTTGCACGAGGTGGATC CCTTGCAAAAGCCAAAACAAGATCGATATGCGCTTAGAACTTCACCTCAGTGGCTTGGTCCTCTTATCGAAGTGATTCGA TTCTCAACAAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTTTGATTGATGTTTCCAGAAACAAGGCCTT ACATGGTGGTAATTTCCAAGGAACCCCAATAGGAGTTTCCATGGACAACACACGTCTAGCTCTTGCATCAATTGGCAAAC TTATGTTTGCTCAGTTCACTGAGCTTGTGGATGATCATTACAACAATGGGTTGCCTTCAAATCTCACTGCTAGTAGAAAT CCTAGTTTGGATTATGGTCTCAAGGGAGCAGAAATTGCCATGGCTTCTTATTGCTCTGAGCTCCAATATCTTGCCAATCC AGTCACAACCCATGTCCAAAGTGCTGAGCAGCACAACCAAGATGTAAACTCCTTGGGTTTGATTTCTTCTAGAAAAACAT ATGAAGCCATTGAGATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTG GAGGAGAACTTGAAATACTCGGTGAAGAACACTGTAAGTCAGGTTGCCAAGAGGACTCTTACCACAGGTGTCAATGGAGA ACTCCATCCTTCAAGGTTTTGTGAAAAAGATTTGCTGAAAGTGGTTGATAGAGAGACTGTATTTGCCTATATTGATGACC CCTGCAGTGCTACATATCCATTGATGCAAAAACTAAGGCAAGTGCTTGTGGATCATGCATTAGTAAATGAAGAAAACGAG AAGAACATGAACACGTCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTAAAGAGTCTCTTGCCAAAGGAGGTCGA AAGTGCAAGGGCTGCATATGAGAGTGGCAATCCAGCAATTCCAAACAAGATCAATGAATGTAGATCTTACCCGCTGTACA AGTTTGTGAGGGAGGGGTTGGGAACTGAGTTGCTAACCGGAGAAAAGGTCCGGTCACCGGGTGAGGAGTGTGACAAACTG TTCACAGCAATATGTGAGGGTAAAATCATTGATCCTCTTCTGGAATGCCTTGGGGAGTGGAACGGTGCCCCTCTTCCGAT TTGTTAACTTAACCATTTATTTTTTTAAATGATATCTTTGTATTTATGCAAGTATAATGTTAATCATTAGCTTTATCAAG CCTTGAGCATAATAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0102000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGCAGAGTCAATGAAGGGGAGCCACCTTGACGAGGTCAAGCGCATGGTGGCAGAGTACCGGAAGCCGGTGGTCCG GCTGGGCGGAGAGACGCTGACCATAGCTCAGGTGGCTGCTGTTGCAGCACATGACCAGCACCATGGTGTGAGCGTTGAGC TGTGCGAGTCCGCTAGAGCTGGCGTTAAGGCGAGCAGTGACTGGGTGATGAATAGCATGAACAATGGAACTGACAGTTAC GGCGTCACCACCGGTTTTGGCGCCACCTCCCATCGCAGAACCAATCAAGGCAATGCTTTGCAGCAAGAACTCATCAGGTT TTTGAATGCCGGAATATTTGGCAATGGTACCGAGTCAAGCCACACGCTGCCACAACCTGCAACTAGAGCAGCAATGCTGG TGAGGATCAACACTCTTCTCCAAGGTTACTCAGGAATTAGATTTGAAATCCTAGAAGCCATCACCAAGCTGCTTAACAAC AGCATCACACCATGTTTACCGCTTCGTGGTACCGTCACAGCTTCTGGTGATCTGGTCCCTCTTTCTTACATTGCTGGCTT GCTTACTGGCCGACAAAACTCCAAAGCCGTTGGACCTTCTGGAGAGGTACTTAATGCCAAGGAAGCTTTCCAATTGGCTA GCATCGACTCGGGGTTCTTTGAATTGCAGCCTAAGGAAGGGCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCTGGGTTA GCTTCTATTGTTCTCTTTGAGGCTAACATATTGGCTATACTGGCTGAAGTTCTATCAGCTATTTTTGCCGAAGTGATGCA AGGGAAACCTGAATTTACCGACCATTTGACACATAAGCTAAAGCACCACCCTGGACAAATTGAGGCTGCTGCAATCATGG AGCACATTTTGGATGGAAGTTCCTACATGAAAGCAGCAAAGAAGTTGCACGAGGTGGATCCCTTGCAAAAGCCAAAACAA GATCGATATGCGCTTAGAACTTCACCTCAGTGGCTTGGTCCTCTTATCGAAGTGATTCGATTCTCAACAAAGTCAATTGA GAGAGAGATTAACTCTGTGAATGACAACCCTTTGATTGATGTTTCCAGAAACAAGGCCTTACATGGTGGTAATTTCCAAG GAACCCCAATAGGAGTTTCCATGGACAACACACGTCTAGCTCTTGCATCAATTGGCAAACTTATGTTTGCTCAGTTCACT GAGCTTGTGGATGATCATTACAACAATGGGTTGCCTTCAAATCTCACTGCTAGTAGAAATCCTAGTTTGGATTATGGTCT CAAGGGAGCAGAAATTGCCATGGCTTCTTATTGCTCTGAGCTCCAATATCTTGCCAATCCAGTCACAACCCATGTCCAAA GTGCTGAGCAGCACAACCAAGATGTAAACTCCTTGGGTTTGATTTCTTCTAGAAAAACATATGAAGCCATTGAGATCCTT AAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAAATACTC GGTGAAGAACACTGTAAGTCAGGTTGCCAAGAGGACTCTTACCACAGGTGTCAATGGAGAACTCCATCCTTCAAGGTTTT GTGAAAAAGATTTGCTGAAAGTGGTTGATAGAGAGACTGTATTTGCCTATATTGATGACCCCTGCAGTGCTACATATCCA TTGATGCAAAAACTAAGGCAAGTGCTTGTGGATCATGCATTAGTAAATGAAGAAAACGAGAAGAACATGAACACGTCAAT CTTTCAAAAGATTGCAACTTTTGAGGATGAGTTAAAGAGTCTCTTGCCAAAGGAGGTCGAAAGTGCAAGGGCTGCATATG AGAGTGGCAATCCAGCAATTCCAAACAAGATCAATGAATGTAGATCTTACCCGCTGTACAAGTTTGTGAGGGAGGGGTTG GGAACTGAGTTGCTAACCGGAGAAAAGGTCCGGTCACCGGGTGAGGAGTGTGACAAACTGTTCACAGCAATATGTGAGGG TAAAATCATTGATCCTCTTCTGGAATGCCTTGGGGAGTGGAACGGTGCCCCTCTTCCGATTTGTTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0102000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAAESMKGSHLDEVKRMVAEYRKPVVRLGGETLTIAQVAAVAAHDQHHGVSVELCESARAGVKASSDWVMNSMNNGTDSY GVTTGFGATSHRRTNQGNALQQELIRFLNAGIFGNGTESSHTLPQPATRAAMLVRINTLLQGYSGIRFEILEAITKLLNN SITPCLPLRGTVTASGDLVPLSYIAGLLTGRQNSKAVGPSGEVLNAKEAFQLASIDSGFFELQPKEGLALVNGTAVGSGL ASIVLFEANILAILAEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEVDPLQKPKQ DRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFT ELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEIL KLMSSTFLIALCQAIDLRHLEENLKYSVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDRETVFAYIDDPCSATYP LMQKLRQVLVDHALVNEENEKNMNTSIFQKIATFEDELKSLLPKEVESARAAYESGNPAIPNKINECRSYPLYKFVREGL GTELLTGEKVRSPGEECDKLFTAICEGKIIDPLLECLGEWNGAPLPIC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.275.10
1 234 234 1.0E-92
IPR024083
SUPERFAMILY
SSF48557
2 688 687 1.02E-259
IPR008948
TIGRFAM
TIGR01226
2 677 676 0.0
IPR005922
PANTHER
PTHR10362
2 688 687 0.0
IPR001106
PANTHER
PTHR10362:SF45
2 688 687 0.0 –
CDD
cd00332
31 498 468 0.0
IPR001106
Pfam
PF00221
33 502 470 1.0E-151
IPR001106
ProSitePatterns
PS00488
170 186 17 -
IPR022313
Gene3D
G3DSA:1.20.200.10
235 677 443 2.2E-218 –
Gene3D
G3DSA:1.10.274.20
501 615 115 2.2E-218
IPR023144

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006559
Biological process L-phenylalanine catabolic process The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid.
Subterm of
GO:0016841
Molecular function Ammonia-lyase activity Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0102000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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