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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0105900 |
| Transcript ID | LotjaGi5g1v0105900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing family protein; TAIR: AT2G35930.1 plant U-box 23; Swiss-Prot: sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23; TrEMBL-Plants: tr|A0A1J7IEZ1|A0A1J7IEZ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0105900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:19985630..19990715) extracted from Lotus japonicus Gifu genome v1.2.
TATCATCTCAAAGGATGCTTAAATTATCAATTAGAGTACCATGTTTTAAAGGGAAAATTACACTCACCTTCCATGATTGT CCTGACCTCTCATTAGTTTGTAAAATTCATTAATCTATCATCCTTCATATATTATTTTGAATAATAGAGGGGTATTGAGT GTTATAATAATAAATCTTAGAGTACCTGATCAGTACAACAATGATAAACCTCAAAGGATGTGAGTGTAATTTGCCATATA TATTTTAAATACACATCCACTCTCATTTTGTTTCATTTCACTTTCATTCTTTTTTCTATTGTTCACTTCTTTTTCCTATC ATATCTCTCACTCACTCTTTTTTTTCTATATCTATGTGGTTGTGGAATTTTGGATGTGAATTATATTTCATTTGGAATTT CTCTTCAAGAGACTTTCTATTTACACTCTATTAACAGAGTTAGCCAACTGCTGAATCTCGTATTTCTTTCTAATATTAAG GTATTCTCATAGTCAATATTTATAAGACTAATTCTCTCAAAACTCAGAAATCACATTAAATGAATACATATCTTCAAATG AATTATTCTAAATGAGCTCAGTTATTTAACAATGATGCTAAGAATTGTTTGTAATAGTAAAATTAAAATAAAGTAACTGT AATTTTTTAAAAAAATAATGATTAATTATAATTATACTCTTTAATATTTTTTGATACTTCAATTACACATTCATGCTTTT GAAAGTAATATTTTTTTTACATCAGAAATATAAATTGCATCTTCAAGAGATTGATTATGAACTTCCTTTATCTAAATCAT ATATCTCATACCCTATTTAAGTAAAAGAAATCGATGAGATAAAAAAAAATTCCAATACGTTTGGTCAAAGGAACTGTGAC AACTAGAATAAGCTATTAAGCATGCAGCTAATGTAGTTATGGTTAAAACTTAAAAAGGCCTCGCTATGATTTGCTGGTTA GTTCGTTGCAACATATCCACCACTCAAGGAATACAATTCTTTGGCTTACCTAAAAAAAACTCAAGGGAATATCTCAGTAT TTCTTGTTTGTTTTCTATTTTTGAGGGATCAATTAATATTTTTTTATGAATTCTCATATGTCAACGCTTTGAAAGTTCCA CTATTGTTTTTTTTTTTCATTTGCATTTTTTTTAAATGTCGGCCAACGGTCAACCCTCAAGGTATACTTAATCAAGCCTA GTGAGTTGGAGATGGAGAGAGAAACCAACTAACGGCCACCGCACTCTAAAGAGAAAGTCAAAAGGGGTAAAATGACATAA ATAATATTCCTCCATGCATATGTGTTCAATTCTTTTTAACCCCCTTTTCTTTATCCTTTTCCTTATTGATTTAAAAATAA AAGCAATTTCTTAAAATATACTTATTATAGAGAAGCTGGATGAGGGACATGCAGAGTTGGGATTTGGGATTGAAATGTTA ATTTTTTTGAGGAGTCTCTTATGCATATTTTGAAATTTTCTCCTTTTTTTTGCTATTTTTGTATTGTATGTGTCTAAATT TGTTCGTGTAGTTATTTGTTTATCTTTCAGTATTTTCATGTGGAAAAGAAATATCAAACATTCTCTTCAACGACATTTTA TGTTATTTTTGAAAAAGTATTTATCTTTATTTGTTCATTAAGTATAGTGACAATTTAGATTATCAAAAAAAAAAAGTATA GTGACAATTTAGGGTTCGAACTTAAAGGGTAAGTATGAAAATGATTTGTTTTGAGGGTTAAAACTCACTTTGATAATCAC TACGTCTCAAAAATGGAATTAATCTCTGCCTGTCACCTAATATATAATAGTTTTATTATTTTCTTAACTCCAATGTTCTT TTTGCCTAATTATATTACCTAATAAGAAAAATAACTTTTGAAAGTTTATGCATTAAAATATCTACCAAAAAAATTAAAAT ATAAATTTAACTAATTTTTGTTGTCTCTTTCCTATAATTAAATTACAATTTTATTTTTTTGTGCAAATTTAATTTTTCAA ATTTTCAATTTTTAGAATTTAGTTATTTCATAGATTTTATCTTGTATTTACTCAAATTTCTCACAAATCAAATGGACTAA ATTATTTTAAACCTTCTTCCACTAATAGTTGAAGAGTGCTAACAACAATTTTTTTGAATTTTTTTTAACAATCTTTCATT GATTAAAATATTCATGCGAGTCTTACTAAATTGTAATGTCTGCCAAAGCTATCATATTAATTGGGTAGGTCACTTCCCAA TGAACTTTCTTAATACGCACCTCCCAGTAATTAAACTCTGAATTAAATGCTTAAGAAGTCTAGTTATCTATTAATTGTGC TAGACCTAATTGGTAAAATTTATATTTTCTAAACTTTCAAAGTTATTCACATTCCACAGACATTATAAGTTTACCATATA TTTGGATAGAAAATGAGAAATAAACCAATGTTTTACACCATGTTTTAAATAGAAGAAGTAGGCAACATCTCTATATTTGC TAAGTTCTTCTATCTTTGTTAATGTTACTGACCAGGTAAAGTTGGTCATTCTTGAGCCCTTCGCATGATCCATATGGAAA TGTCATTACTATCCCTCCTCTAAGGCGGACTTTTGCGTGTATTGACTTTCCCACAGTCTGAACACGGATACTCTATAAAA CTATAAATAACAAGACCCTCAACATCCCTCTCTCATATCAAACGTAACCAAACCAAAAGCATTCACTTTTCATTTTTCAA AGTCCAAATTTGCAGCTGCTTCACCTGAATCATGGACGAGATTGAAGTGCCTCCATTCTTCCTCTGCCCAATTTCCTTAG AAATCATGAAGGACCCCGTCACAATCTCCACCGGAATCACCTACGACCGAGACAGCATCGAGAAATGGCTCTTCTCAGAG AACAACAAAACCTGCCCGGTCACCAAACAGGCCCTAAATCTCTCCGATTCAACCGGTCCCACGCCGAACCACACGCTCCG GAGACTCATCCAAGCGTGGTGCACAATCAACTCCTCTCACGGAGTCGAAAGGATCCCAACTCCAAAGCCTCCAGTGTCAA AAACCGCAATAAAAAAGCTTCTCATAGACGCTTCTCATTCAGACTCTCCTCAGTTGCAGATCCAATCTCTCGGAAGGCTC AAATCCATCGCTTCTGAGAGCGAAACCAACAGACGCTGCATTGAATCCGCTGGCGCGGTCGAGTGCTTAGCGTCTGTTGT AACAACCAGAACCAATTCTTTATCTTTAGATGATGAAATTGAAGGGTTTGACTTAAAATCAGGTCCTGCAGATGAAGCTT TGAGCATCCTCTTCACTCTTAATTTACAAGAATCAGGTTTGAAAACCCTCTTTAGCTACCAAAATGGTGAATTTGTACTC TCCTTGACGAGGATCATGCAGAAAGGACTCTACGAGTCGCGAACTTACGCAGTTTTGTTGCTGAAATCGATGTCTGAAGT GGCTGATTCAGCGAAGATAGCGAATCTGAGAGGTGAGTTGTTTGTGGAATTGGTACAAGTCTTGAAAGATCAGGTTTCCC TGAAGGCTTCCAAGGCGACGCTGAAGACGCTGATTCAGCTGGTTCCGTTCGGGAGGAACAGGATCAAAGCAGTGGAAGCT GGGGCGGTACCTGTTCTGGTCGAGCTTCTTCTGGATTGCAAGGACAGGAAGCCTTGTGAGATGATGATGGTGCTTTTGGA GATTTTATGTCAGTGCGCGGACGGGCGCGCGGAGCTTTTAAGCCATGGAGCGGGGCTAGCCATCGTGTCCAAGAAGATTC TCAGGGTTTCCACAATGGCGAACGATAGGGCTGTTAGGATTCTGCTATCGGTTTCACGATTCTCTGCGAAACCGAGTGTT TTGCAAGAGATGGTGCAGTTTGGGGTGGTGGCCAAACTGTGTTTGGTGCTTCAAGTGGATAGTGGCAACAAGGCCAAGGA GAAAGCAAGGGAGATACTCAAATTGCATGCTCGTGTTTGGAGAAACTCTCCTTGCATACCTAGCAATCTGCTTGCTTCAT ATCCAACAAGTGAGTGAAAATGAAATCGAATTTTGATCAAGGTTTGAAATTGCGGTTAAGATCCTTGAAATTGTAGAAAA TTACAGAAAATTGGGATCATAATTGCAGTACTCGCAAGATGCTCTTGAAGACCTCTAGAATCATGAGACTGTGCAGGCTG CAATCAAGATAGTAAAATGTGATTTAAAATTTTAGTTTTCACCTTCCTGTAAAAATTAGCTTTCAGAATTACACCTCTTT TCGGTTTTGCTTTTTCATTGTACAGAATTATTTGAAGAACAAGTCTGACAACAAAGAGATAGGAATTATGGGCACATAAA ACGTTGTTCATAAAGAGGAATGTGTGGATAGTGTGGGCAATTGGGCACATAAAATATTGTTCATATTTTTTTAATAAGCA AATATTGTTCATATATATGAATTTGTTTTGGATGACTTCACCACATAATGGATTTCTAAGTCTACAGAGTTTATCATCAT ATATACGGATAGCTACTTTTTTCACTTGCATTTTAAGTTTTGAATTACAATTACTCTTGTAATTATGTAAGCATGCATGT CTTGGTAAAAATATATGATAGTACTCTGAAGATATCTATTCTTGATATAGTTATCTGTTTATTTGGTTATTGTCATCCTA CTTTTTCTTTTAAAGTTTATTGGGCACCCAAACAATCTTAACTGCTATAAGGTAGTCAAAGATGTCGTGATATCAAGTGT GAGTAAAAGAGGTGGGTCAGCCGAGGCAAGTAGCTAGTCGACTATTGGGTATGAATAGGACGTTAGCCGAAGGAATAAAA TCAATTCATGGATAAGTACAAAAACCGAGGCTTAGAAAATAAGACATTTTTACGTTTATTCTCAGAAACTAGGGTTTTGT TACATGAAATATTGGATATGGATATTTTTCTTTAAAATAGGAATACAGGAAAGACTATTATCCAAGCTGACTAGGAATTG AAAGACATCACACCAACGATTTGTAGTGATTTGCATGAAATCTATAATATTTGGATGCAAAGGAGGTTTTATTTGTGTTT GAGAGTTGACAATTAGCATCAGCTAAGACAGACCCTAAAATCTTCC
CDS sequence (LotjaGi5g1v0105900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGAGATTGAAGTGCCTCCATTCTTCCTCTGCCCAATTTCCTTAGAAATCATGAAGGACCCCGTCACAATCTCCAC CGGAATCACCTACGACCGAGACAGCATCGAGAAATGGCTCTTCTCAGAGAACAACAAAACCTGCCCGGTCACCAAACAGG CCCTAAATCTCTCCGATTCAACCGGTCCCACGCCGAACCACACGCTCCGGAGACTCATCCAAGCGTGGTGCACAATCAAC TCCTCTCACGGAGTCGAAAGGATCCCAACTCCAAAGCCTCCAGTGTCAAAAACCGCAATAAAAAAGCTTCTCATAGACGC TTCTCATTCAGACTCTCCTCAGTTGCAGATCCAATCTCTCGGAAGGCTCAAATCCATCGCTTCTGAGAGCGAAACCAACA GACGCTGCATTGAATCCGCTGGCGCGGTCGAGTGCTTAGCGTCTGTTGTAACAACCAGAACCAATTCTTTATCTTTAGAT GATGAAATTGAAGGGTTTGACTTAAAATCAGGTCCTGCAGATGAAGCTTTGAGCATCCTCTTCACTCTTAATTTACAAGA ATCAGGTTTGAAAACCCTCTTTAGCTACCAAAATGGTGAATTTGTACTCTCCTTGACGAGGATCATGCAGAAAGGACTCT ACGAGTCGCGAACTTACGCAGTTTTGTTGCTGAAATCGATGTCTGAAGTGGCTGATTCAGCGAAGATAGCGAATCTGAGA GGTGAGTTGTTTGTGGAATTGGTACAAGTCTTGAAAGATCAGGTTTCCCTGAAGGCTTCCAAGGCGACGCTGAAGACGCT GATTCAGCTGGTTCCGTTCGGGAGGAACAGGATCAAAGCAGTGGAAGCTGGGGCGGTACCTGTTCTGGTCGAGCTTCTTC TGGATTGCAAGGACAGGAAGCCTTGTGAGATGATGATGGTGCTTTTGGAGATTTTATGTCAGTGCGCGGACGGGCGCGCG GAGCTTTTAAGCCATGGAGCGGGGCTAGCCATCGTGTCCAAGAAGATTCTCAGGGTTTCCACAATGGCGAACGATAGGGC TGTTAGGATTCTGCTATCGGTTTCACGATTCTCTGCGAAACCGAGTGTTTTGCAAGAGATGGTGCAGTTTGGGGTGGTGG CCAAACTGTGTTTGGTGCTTCAAGTGGATAGTGGCAACAAGGCCAAGGAGAAAGCAAGGGAGATACTCAAATTGCATGCT CGTGTTTGGAGAAACTCTCCTTGCATACCTAGCAATCTGCTTGCTTCATATCCAACAAGTGAGTGA
Protein sequence (LotjaGi5g1v0105900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEIEVPPFFLCPISLEIMKDPVTISTGITYDRDSIEKWLFSENNKTCPVTKQALNLSDSTGPTPNHTLRRLIQAWCTIN SSHGVERIPTPKPPVSKTAIKKLLIDASHSDSPQLQIQSLGRLKSIASESETNRRCIESAGAVECLASVVTTRTNSLSLD DEIEGFDLKSGPADEALSILFTLNLQESGLKTLFSYQNGEFVLSLTRIMQKGLYESRTYAVLLLKSMSEVADSAKIANLR GELFVELVQVLKDQVSLKASKATLKTLIQLVPFGRNRIKAVEAGAVPVLVELLLDCKDRKPCEMMMVLLEILCQCADGRA ELLSHGAGLAIVSKKILRVSTMANDRAVRILLSVSRFSAKPSVLQEMVQFGVVAKLCLVLQVDSGNKAKEKAREILKLHA RVWRNSPCIPSNLLASYPTSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 418 | 418 | 4.6E-195 | – | |
| PANTHER | 1 | 418 | 418 | 4.6E-195 | – | |
| Gene3D | 1 | 87 | 87 | 5.3E-27 | ||
| SUPERFAMILY | 3 | 85 | 83 | 2.96E-26 | – | |
| ProSiteProfiles | 5 | 83 | 79 | 35.314 | ||
| Pfam | 6 | 80 | 75 | 9.1E-19 | ||
| SMART | 9 | 76 | 68 | 2.1E-28 | ||
| CDD | 10 | 53 | 44 | 7.34127E-24 | – | |
| Gene3D | 92 | 400 | 309 | 7.0E-13 | ||
| SUPERFAMILY | 102 | 404 | 303 | 2.04E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi5g1v0105900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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