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LotjaGi5g1v0112400.1

Overview

Field Value
Gene ID LotjaGi5g1v0112400
Transcript ID LotjaGi5g1v0112400.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 30S ribosomal protein S7; TAIR: AT2G37270.1 ribosomal protein 5B; Swiss-Prot: sp|O65731|RS5_CICAR 40S ribosomal protein S5; TrEMBL-Plants: tr|V7BV97|V7BV97_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0112400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:22274995..22278500) extracted from Lotus japonicus Gifu genome v1.2.

GTTTAAGTTTTGACAACAATTTTATAAATACCCAAACTATCTCCAACCTGCAGCTAGGGTTTATTCGAGTAGCAGTTTCT TCTTGCCGCCCACTCACGTTACCAAGTTCGTTCCCTCTTTGTTCTTCATCTCTCATCTCCTCTCTTCCTCTTTCGATTTC GCTTTTAATTTTATTCACTCTCTTTGTTCAATCGCCTTTGCAGCCATGTCTGACGTTATCGCCGAGCCTGCGATTGTTGC AGATCCCTCCCAAATCGATGTCAAGCTCTTCAACCGATGGAGCTATGATGATGTTCAGGTACATCATCTCTCTAGCGAGT TTTCATCATTTATAGCACAAAATGCACTATTATATGCTACATTATATCAGATTTGAACTATGCAGCATCTTAGTTACTCA GATTTGGACTGTATAAATTTAAATTCTTAATTTATTATTTTGATAACATGCTGTGTATGATAGTGTCCTGAAAATATTTT ATTTATATAGGGCTCATTGTATTCTTATCAGTTATCACTCAAATGTTGATTTTAATTTTGTTATTTTACATATTTGGGTT TTTTTTTTTTTGGTTTGTGTTGTTGTTAGGTTAATGACATTTCTTTGGCTGATTATATTGGAGTGGTGGCATCCAAGCAT GCCACATATGTTCCCCACACTGCTGGTAGGTACTCTGTGAAGAGGTTCAGGAAAGCTCAGTGCCCCATTATTGAGAGGCT CACCAACTCCCTCATGATGCACGGAAGAAACAATGGAAAGAAGCTTATGGCTGTTAGGATTATCAAGCATGCTATGGAAA TCATTCACTTGCTGACTGACTTGAACCCAATTCAGGTCATTGTTGATGCTGTCATCAACAGGTATGACTGCCGCCCCAAG AACTATTTTTTGTGTTTTGGTTTGTGTATAGATCTACAGTTATGCCTAAGTTGCTAGTTCATTTTGTGTTTGATATTGTG ATAAATTTTTATTTAGTAGATTTGATTTACGATTTGCTTGTGAAACTTCATGTCTGGCTCTATTTGGAGGATGGGATGAT GACCGTTTGTTTTCCTATTGGTTTGAGTGCCTGAATGATGGCAATTTGTATTAGCTCTATCTGACCATTCTCCTTATCTC CCTCTGCATTTTTTGACATTCCTTTAGTTGAAGGCAATGTCATGTTAAATGCATTTAGATGACTTTTGCTTTGGTTATCA TGCTCATTAGTTTCATGTTTTTATGCTTGGTATGAATGGTTATTGATTGAACTGGGAAAAAGGAAACCTGAAGTTTGATT TTAAAACTACTTTAGTTTAAGGTTTCGACTAACGGCTGTTGGAGTTAGAGAATGACATGATGATTAGTTATTTCCCTATT GGTTTGATTGCCTGGATGATGGCACTTCTGTATTAGCTCTATCTGATCATTCTCCTGAACAACAGAGCTCTGGTTATTGT TATGAACTAGGTCTGGTTTTGCATTTCTTTACTTTGTGAACTTTAGTTTCTGGAAGTTGAAACATTATTTTCTTTGGTAC TTGTATTAGCTCTATCTGATCATTCTCCTGAACAACAGAGCTCTGGTTATTGTTATGAACTAGGTCTGGTTTTGCATTTC TTTACTTTGTGAACTTTAGTTTCTGGAAGTTGAAACATTATTTTCTTTGGTACTTGTACTCATTAGTGTCATGTTTTATG CTTGTTTTAAATGGTTATTCTAAATTTGGGCTAGTTTTAAGGTTTAGACCAATGTCAGTTGGAGAATGACATGATGATTA ATTGTTTCCTTATTGGTTTGATTGCCTGGATGATGGCAGTTCTGTATTAGCTCTATCTGATCATTCTCCTAAACAAGTGT TATTTTTGGTTTAATTTCATTTGAACAACACACCATTTTGAAAAAATTGTTAATATCCCTTGATATAGTCTCTATTGCCT GTTTGCTTACATTTTAATTTACGATATTAGCTTTTCTTTGGTAGTTTCAAACAGAAGATTCATATTTTTCTTGAGTAATC TGTGTATGGTTGACATATTAAACAAAACATGTAATTAAAAAAGGGTTCACTAAATTTGAATGTTACAGAAATTGTGAATG AGTATTGGTATGCTACCTCGGTAATGTGGCAATGTGTACCCTGTTTGCAATTCTTAATATGTGCTGTTGAATAAACAATT AAACTATTTGTGTTCCATTTGTTTATCTGACTCACTTTATTTTGTTTATTATATTCAGTGGTCCTCGTGAAGATGCCACT CGAATTGGTTCTGCTGGAGTTGTAAGGCGTCAAGCAGTTGATATCTCACCACTTCGACGTGTTAATCAGGCCATCTATCT TTTGACAACTGGTGCACGTGAAGCTGCTTTCAGAAATATTAAAACAATTGCTGAATGCTTGGCTGATGAACTTATTAATG CAGCAAAGGGTTCATCCAACAGGTATGATTTTACAACTCTGTTAGTGGAGATGCATTTTCTCATGTATTTGTAGCATGTC TTGTTTTCTCTCTAGAATGAAACCCACTTAGCTTTTGTCCAAAATATTTTGGGTCCTTGTCACTGGGAAATCGAACATGC TGTAAACATCATCTTTTTTCAATTTTTTTAAACGGTGTTTGGATTTGGCTGAAATTGTTGCTCCATTTCAGTTATGCTAT CAAGAAAAAGGATGAAATTGAAAGAGTTGCCAAGGCCAATCGTTGATCAGCTCCTGCAAGCAATATGGGTGATCAGAAAG ATTTTGTTTTGGTCTTTGTACTTTATTTAATGGTACTTCGATCTTTAGTTACTTTTTAGCTGTTCGTTTCTCTGGTTCAC ATGTTATGAACAGTTTTTTGTTGCTTGGACGTAAATTTGTATTCCAAGATTGTGAGTTCAGTTCTAGCCTGCTTCATAAA TTTTACTATGATAATTGCAATGGCGTAGGCATCTTTGGCCCACAATGTTGTGTGTTTCGTTTCAAGTTAGATTTTTTTAT TTGGTAAATGGAAACATCTTTCCATAAATACTTCTGAATACCAGCTGGGTAGTACAACCAAGATCGAGGAGCAAGCTAAT AAAATCTAGAAGAGGCCCTAGCAAAAGTCTATCATAGTTTCCAAAAACATGCCCACATGGCTGCACAAGGGAGACATTTC CTAGATGAAGCACTCTTGTTGTACCAGTGGGGTCTAACATATCACTAACACATGCAAACTTATCTCTAACAGTATAAAGT AGGTTTTTTCTTGCAACAGTCAGGGCCTTAACACTGAACGGCCACATCATTAGTCATTCCCACTGCCTTGTCATAGCTTT AGCCCCTTAACTAAGGATGATTAGCGTAATTTGAACTATTACGGTGTTTGTCAATTGAATTATAGGATGGTTCCAGCCAA AAAGCTATTGTCAATTGGGCCATCGAATCTGTTCGCTGATCTACTCTTTTTTTTGAACTCAAGTTCGCTGATCTACTCTT AACATAGTAAAATTTCGATTAGATTTTGTTTTTTCAGCTATAAAGCTTTTTGTTGTATTTAACTCC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0112400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGACGTTATCGCCGAGCCTGCGATTGTTGCAGATCCCTCCCAAATCGATGTCAAGCTCTTCAACCGATGGAGCTA TGATGATGTTCAGGTTAATGACATTTCTTTGGCTGATTATATTGGAGTGGTGGCATCCAAGCATGCCACATATGTTCCCC ACACTGCTGGTAGGTACTCTGTGAAGAGGTTCAGGAAAGCTCAGTGCCCCATTATTGAGAGGCTCACCAACTCCCTCATG ATGCACGGAAGAAACAATGGAAAGAAGCTTATGGCTGTTAGGATTATCAAGCATGCTATGGAAATCATTCACTTGCTGAC TGACTTGAACCCAATTCAGGTCATTGTTGATGCTGTCATCAACAGTGGTCCTCGTGAAGATGCCACTCGAATTGGTTCTG CTGGAGTTGTAAGGCGTCAAGCAGTTGATATCTCACCACTTCGACGTGTTAATCAGGCCATCTATCTTTTGACAACTGGT GCACGTGAAGCTGCTTTCAGAAATATTAAAACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAGGGTTC ATCCAACAGTTATGCTATCAAGAAAAAGGATGAAATTGAAAGAGTTGCCAAGGCCAATCGTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0112400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSDVIAEPAIVADPSQIDVKLFNRWSYDDVQVNDISLADYIGVVASKHATYVPHTAGRYSVKRFRKAQCPIIERLTNSLM MHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTG AREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF002122
2 207 206 1.1E-40
IPR000235
Gene3D
G3DSA:1.10.455.10
5 207 203 2.5E-101
IPR036823
PANTHER
PTHR11205:SF36
15 207 193 4.2E-132 –
PANTHER
PTHR11205
15 207 193 4.2E-132
IPR000235
TIGRFAM
TIGR01028
19 207 189 5.2E-90
IPR005716
CDD
cd14867
20 207 188 2.74985E-136
IPR005716
SUPERFAMILY
SSF47973
20 207 188 6.02E-67
IPR036823
Pfam
PF00177
62 207 146 3.5E-36
IPR023798
ProSitePatterns
PS00052
73 99 27 -
IPR020606

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of
GO:0015935
Cellular component Small ribosomal subunit The smaller of the two subunits of a ribosome.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0112400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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