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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0112400 |
| Transcript ID | LotjaGi5g1v0112400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S7; TAIR: AT2G37270.1 ribosomal protein 5B; Swiss-Prot: sp|Q9ZUT9|RS51_ARATH 40S ribosomal protein S5-1; TrEMBL-Plants: tr|A0A151QZT3|A0A151QZT3_CAJCA 40S ribosomal protein S5; Found in the gene: LotjaGi5g1v0112400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:22275815..22278283) extracted from Lotus japonicus Gifu genome v1.2.
ATCGCCGAGCCTGCGATTGTTGCAGATCCCTCCCAAATCGATGTCAAGCTCTTCAACCGATGGAGCTATGATGATGTTCA GGTACATCATCTCTCTAGCGAGTTTTCATCATTTATAGCACAAAATGCACTATTATATGCTACATTATATCAGATTTGAA CTATGCAGCATCTTAGTTACTCAGATTTGGACTGTATAAATTTAAATTCTTAATTTATTATTTTGATAACATGCTGTGTA TGATAGTGTCCTGAAAATATTTTATTTATATAGGGCTCATTGTATTCTTATCAGTTATCACTCAAATGTTGATTTTAATT TTGTTATTTTACATATTTGGGTTTTTTTTTTTTTGGTTTGTGTTGTTGTTAGGTTAATGACATTTCTTTGGCTGATTATA TTGGAGTGGTGGCATCCAAGCATGCCACATATGTTCCCCACACTGCTGGTAGGTACTCTGTGAAGAGGTTCAGGAAAGCT CAGTGCCCCATTATTGAGAGGCTCACCAACTCCCTCATGATGCACGGAAGAAACAATGGAAAGAAGCTTATGGCTGTTAG GATTATCAAGCATGCTATGGAAATCATTCACTTGCTGACTGACTTGAACCCAATTCAGGTCATTGTTGATGCTGTCATCA ACAGGTATGACTGCCGCCCCAAGAACTATTTTTTGTGTTTTGGTTTGTGTATAGATCTACAGTTATGCCTAAGTTGCTAG TTCATTTTGTGTTTGATATTGTGATAAATTTTTATTTAGTAGATTTGATTTACGATTTGCTTGTGAAACTTCATGTCTGG CTCTATTTGGAGGATGGGATGATGACCGTTTGTTTTCCTATTGGTTTGAGTGCCTGAATGATGGCAATTTGTATTAGCTC TATCTGACCATTCTCCTTATCTCCCTCTGCATTTTTTGACATTCCTTTAGTTGAAGGCAATGTCATGTTAAATGCATTTA GATGACTTTTGCTTTGGTTATCATGCTCATTAGTTTCATGTTTTTATGCTTGGTATGAATGGTTATTGATTGAACTGGGA AAAAGGAAACCTGAAGTTTGATTTTAAAACTACTTTAGTTTAAGGTTTCGACTAACGGCTGTTGGAGTTAGAGAATGACA TGATGATTAGTTATTTCCCTATTGGTTTGATTGCCTGGATGATGGCACTTCTGTATTAGCTCTATCTGATCATTCTCCTG AACAACAGAGCTCTGGTTATTGTTATGAACTAGGTCTGGTTTTGCATTTCTTTACTTTGTGAACTTTAGTTTCTGGAAGT TGAAACATTATTTTCTTTGGTACTTGTATTAGCTCTATCTGATCATTCTCCTGAACAACAGAGCTCTGGTTATTGTTATG AACTAGGTCTGGTTTTGCATTTCTTTACTTTGTGAACTTTAGTTTCTGGAAGTTGAAACATTATTTTCTTTGGTACTTGT ACTCATTAGTGTCATGTTTTATGCTTGTTTTAAATGGTTATTCTAAATTTGGGCTAGTTTTAAGGTTTAGACCAATGTCA GTTGGAGAATGACATGATGATTAATTGTTTCCTTATTGGTTTGATTGCCTGGATGATGGCAGTTCTGTATTAGCTCTATC TGATCATTCTCCTAAACAAGTGTTATTTTTGGTTTAATTTCATTTGAACAACACACCATTTTGAAAAAATTGTTAATATC CCTTGATATAGTCTCTATTGCCTGTTTGCTTACATTTTAATTTACGATATTAGCTTTTCTTTGGTAGTTTCAAACAGAAG ATTCATATTTTTCTTGAGTAATCTGTGTATGGTTGACATATTAAACAAAACATGTAATTAAAAAAGGGTTCACTAAATTT GAATGTTACAGAAATTGTGAATGAGTATTGGTATGCTACCTCGGTAATGTGGCAATGTGTACCCTGTTTGCAATTCTTAA TATGTGCTGTTGAATAAACAATTAAACTATTTGTGTTCCATTTGTTTATCTGACTCACTTTATTTTGTTTATTATATTCA GTGGTCCTCGTGAAGATGCCACTCGAATTGGTTCTGCTGGAGTTGTAAGGCGTCAAGCAGTTGATATCTCACCACTTCGA CGTGTTAATCAGGCCATCTATCTTTTGACAACTGGTGCACGTGAAGCTGCTTTCAGAAATATTAAAACAATTGCTGAATG CTTGGCTGATGAACTTATTAATGCAGCAAAGGGTTCATCCAACAGGTATGATTTTACAACTCTGTTAGTGGAGATGCATT TTCTCATGTATTTGTAGCATGTCTTGTTTTCTCTCTAGAATGAAACCCACTTAGCTTTTGTCCAAAATATTTTGGGTCCT TGTCACTGGGAAATCGAACATGCTGTAAACATCATCTTTTTTCAATTTTTTTAAACGGTGTTTGGATTTGGCTGAAATTG TTGCTCCATTTCAGTTATGCTATCAAGAAAAAGGATGAAATTGAAAGAGTTGCCAAGGCCAATCGTTGA
CDS sequence (LotjaGi5g1v0112400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCACGGAAGAAACAATGGAAAGAAGCTTATGGCTGTTAGGATTATCAAGCATGCTATGGAAATCATTCACTTGCT GACTGACTTGAACCCAATTCAGGTCATTGTTGATGCTGTCATCAACAGTGGTCCTCGTGAAGATGCCACTCGAATTGGTT CTGCTGGAGTTGTAAGGCGTCAAGCAGTTGATATCTCACCACTTCGACGTGTTAATCAGGCCATCTATCTTTTGACAACT GGTGCACGTGAAGCTGCTTTCAGAAATATTAAAACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAGGG TTCATCCAACAGTTATGCTATCAAGAAAAAGGATGAAATTGAAAGAGTTGCCAAGGCCAATCGTTGA
Protein sequence (LotjaGi5g1v0112400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTT GAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 128 | 128 | 5.4E-86 | – | |
| PIRSF | 1 | 128 | 128 | 8.0E-30 | ||
| PANTHER | 1 | 128 | 128 | 5.4E-86 | ||
| CDD | 1 | 128 | 128 | 7.29452E-93 | ||
| TIGRFAM | 1 | 128 | 128 | 4.0E-62 | ||
| SUPERFAMILY | 1 | 128 | 128 | 3.53E-50 | ||
| Gene3D | 1 | 128 | 128 | 5.9E-67 | ||
| Pfam | 7 | 128 | 122 | 2.1E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Cellular component | Small ribosomal subunit | The smaller of the two subunits of a ribosome. |
Expression pattern of LotjaGi5g1v0112400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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