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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0112800 |
| Transcript ID | LotjaGi5g1v0112800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD repeat-containing protein; TAIR: AT5G52820.1 WD-40 repeat family protein / notchless protein; Swiss-Prot: sp|Q9FLX9|NLE1_ARATH Notchless protein homolog; TrEMBL-Plants: tr|V7C3M9|V7C3M9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0112800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:22478949..22484804) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAATGCAGACAGAGACGACAGAGGTAGTGATGGAGAATAGGGAGATAATCAACAACGTGATGTGCCTTTTGACTGA CCCAGATGGAAATCCTCTTGGTGCTCCTATTTACCTGCCTCAGAATGCTGGTCCACAACAGCTTCAACAGATTGTCAACA AGCTTCTGAACAATGTAAATCCTTTTTCTATTCTAGCTTTCATTTTACATAAATTGGTTGTTTATTGCTGTTATTTTGAG TATCTATATTCTCATTTTAGGAGGAGAAATTGCCATATGCTTTCTACATATCGGACGAAGAGCTCCTTGTGCCACTTGAA ACATACTTGCAGAAAAACAAAGGTTAGTAGTCACATTTGGTTTCAACAAAGTTGTTCTTTTTACTTGTTTTTTGATTTTT ACTAATGTTTTTCTTTTTGTTTTCGATGTTAATTGAACATTATTTCAGTCTCGGTGGAGAAGGTATTGCCTATAGTTTGT CAACCTCAAGCTATTTTCCGGATTCGTCCAGTGAATCGCTGTTCGGCAACTATTTCTGGTATGCTAAATCATGTAAACAT CAATGTGGTTTGGTTCTTTAAGATCTTAATACTGTGTTATTGTCATGTTCTCTGGAATTCATGTCATTGGGATTGTTTGT AGGTCACGCGGAAGCTGTTCTGACGGTTGCCTTCAGTCCTGATGGGCGGCAACTGGCAAGTGGTTCTGGTGATACCACCG TTCGATTTTGGGACATGAACACTCAGACACCATTGTACACATGCACAGGTTTGGCATAGAAATGATAAGTTATTCTTGGA GTTTGCCGAACTTAATTTCTTTATGTTTAATTAAAGCAAAGAACAATTGACTGATGTTTAAGCATCCTACTCTCAGTATA ACTGAAGAGATCAATTTAAGTCATGCAGAAACTACAAGCTTGCGTCACTGGGTTGTCCTTGTGATTGTTGTGTTGCTAGA AAGAAATTCTTGAAAGACTGTGTAGGCTAAATCTATTTCTTTTAAATCTCTATTAACTGTGAGTATGCTACAAGGAAAGG CATGGGATAGTGTATCAATGCAGGGGGAGTTAGAGGATCAACACAAGGAGGACAAAAAGGGAAACACAGATATTATTACT GTTAAGTCTGGAGCTTAAATGAATGCTTAAGTGGCAAAGAATAGTGGGAGAACTTGGTTGCAAAGAAATGAGAATATTAG GGGGATGGATATGAAGTGTGAAGGCTGGCAGTTACCGAGTGAGGGTTTGGGGGATTGGGGTGGAAGTTACCAGTCTCTTG AATGTCCTGTGATATCTTTTTTTTTTCTCTTTTAAGGAATTGGTGCCTTGGAGGTCCACCTCTGTTATAATGAGCTAGTC TTCATTGCTCCATAAATAAATATATGTTTCTATCAAGCTCCTATTAGTTTTGCGCACACACTTTTGGATCTTTTATGAGA ATATTCCATATATAGCTCCGTACTGTGCATTTATGCAGGACACAAGAATTGGGTCCTCTGTATTGCATGGTCACCAGATG GCAAGCATCTTGTAAGCGGGAGCAAGGCTGGGGAACTTCAGTGCTGGGACCCACAAACTGGAAAGTCGTCAGGCAATCCA CTAACTGTAAGGTCTTTGACCCTGAATACCAATTTGTATTATAAATCATGTTTCATTTTTTTTCCTATGGAGATATTTTA GATGAACTACAAATTGTTTATTTTATTTTTATCTTTGGGGTACATAGTTGAACTGTTATTTTGGTTATTCAAAGTACTTA ATTTCATAACATGTTGTTTGAAGAGTTGTCAAGTATATCCATTCCATTATAATGTTTGTTGGAGATCAAAAATTGATGTA TACTAAATACAGGGCCACAAGAAATGGATAACTGGTATATCTTGGGAACCTGTCCACCTGAGTTCTCCTTGCCGTCGCTT TGTAAGTGCTAGCAAAGATGGGGATGCCCGTATATGGGATGTCACTTTAAAGAAATGTGTTATATGTCTCACTGGCCACA CACTTGCAATAACATGCGTCAAATGGGGTGGAGACGGTGTGATTTATACTGGGTATTCTCTCCATCTTTACTTCTGGTTT CTCTTAAGCTTTAGAATCAGTTTTTCTTTATACCCATTTTTTGATATTGCTTGAATTGGGATATTAGTAAAGTAGCTTTG CTGTATAGTTGTTTTTCTTCAAGTTCACAAAAGACTCATTTTTTATTTATCCAGTTTTGGTGTCTGTTTTCACAAGCTCA ACAATTCTTGGGCACTGATCTTTAGGAATATTATTGCCAAATGCCTCCTTTGGGAAAAACCTCATTGAAGTGAAATTCCC TTTTAGTTATTCTTGATCTCATCTTTCTATCTTCAAGTAGTCCTGATTACTGCTGGTTTGTGGTACGAGTTTTCCCCTTT CGTATTACAACTTAAAGCCTAACTGTTATTTTATTACAGCTCCCAGGATTGTACAATCAAGGTTTGGGAAACCACACAAG GAAAGCTAATACGTGAACTGAAGGTGAGTGAGTCTCGTCCCTTTGTACAGTTGAATGCTATTTGTGTTGTACCTTCTATT AATTTGCTCTAAACTCGGTTTTATGTACGCGTCCTATTTCTCACCTGGTGCTACCTTTTTCTTCATTTAAGTTTTTGGAT ATCGTCTTTTAAGTGCCTTTTATGCTACTAATTTGAACTTTCCTATTTCAGTCCTGAAATATTACAACTTACAAGTGTGT TTAATGTTGATTCATTGTTAGAATGTTAGTGTGAAGCTTTTATACTATCATTTAATGTGTCGATACTTGATATATGTTTT AAAAAAGTGACATTCCCAGTTTGATTATAAAACTCTTCGAACGATCATGTGTTACATCAGTAGAAGATAGTGTGAAAAAG GCTTATATTAACATTGGATCAGAATTAAATCTCTAGTACTTTGGTTTGTTGTTCATCCATGCTACCTAATCAGACAATTC AGAATCCTGTTTTTCAATTTTTTTATTTTAATAAATAAATTTAATAGGATTATTTTTTTGAAAACATATAAGAAGCTATA AATATTGTTTTTAATGAAACAAAAAATTTCAACTAAGTTGAGGGGTTGGGCAACTTTGTTCCTTCGAGTTTCTCTTATTT CTTGATTGTTCTGTTTTGTTCTTTTGTTTCCTTATACTCCATAGTCCATTCTACTATTTTCGGTCTCAACGATTTCTTAT ATTAAAAAAGTATATGTAATGCAGAATAGCAAAAGAAGAGTTCTGTCATGCAGGAAACTGACTGTTCTTTTTATATTTAT TTTTGCATCAGATAACCTTGTATCTGTTGTAAACTTCCTACTGATAACTTTTCTTTTTCTATACTTTTTTTTCCCTTCGT ATTTTGGTATTTATTTTAGGGACATGGACATTGGGTTAATTCTTTGGCATTGAGCACTGAGTATGTTCTTCGCACTGGAG CTTTTGATCATACTGGAAAACAATATTCGTCGCCTGAGGAAATGAAGAAGGTATCTATTAGTATTTTTGATAGTGATGTT AGCCCTTTTAACCGTAGTTATTGGTTACTAAACTGACACAATATTCGTCGCCTAATGAAATGAAGAAGGTATCTATTAGT ATTTTTGATAGTGATGTTAGCCTTTTTAACCGTAGTTATTGGTTACTAAACTGACATGCTCTGCCCGGTCAGAATTGTTA TCTAAACCCAGTCTGGGCAGGTTTTTTGAATCCTTGCCTTCATAAAGAAAGGCAAGCTGTAATGCCAGCAGGCAACTTGC TTCTTGCAAGATATTATAAATTTACATTATATTAATATATCCTCATAAAGTTGTAAAGAAAATATAGTTATATTTTACTG TTTTATCTAGATAAAGATGCTTAAAACATGGTCAATTAACACTAAATGTTCTAAAGCTCTAATATTCTTCCAAATTATTG TTGATATATTATTTTACGCTTTTAAAAATTTTCACCTCTCCCCAATAATTTCAGAAACTGAATTTCAGTGAGATGTAGTT GAACCCTAGGTAATGTTTTTGTCAAACAACCACTTAATCCCAAAAGCTTAAGCTGTTGGGTATGGGCAACTTTAATGGAT TTATATTATGTTCTAACACGCCCCCTCACGCAAGAGCCCTTTGGGCTTGAAGCGTGGATAAATGCACAGGCCCGCCTACC ATGTGCTTAATTAAATTCCACTTTTTAATTAGAAAGTGAGGGGAGCAAGGATCGAACTCTAGACCTCTTGGCCATAGAGG CTCTGATACCATGTCAAACAACCACTTAATCCCAAAAGCTTAAGTTGTTGGGTAAGGGCCACTTTAATGGATTTATATTA TAATCTAACAGTTTTTAATCAAGACAGGCAATTTATGGTGCAGCTGGTTCAAATGGATGGTTTGTTCCCATTTTAAAAAA ATTACTTGTTCCATTAATCTATATTTCTATAAAATTATATAACAGAGATATTTAAATTTACTAACATGATTGTTGTTATT TCCATTTATTTATCAGAAGAAAGTATATAGTTCCTTTTGTGCATAGGATTTTAAACTATAAAAAATGTGAGTTCAAATTA AAAAAACTAAAATAAAATATATTTTTATTGGCTTATTTTTTTGAATCAATAAACAACAACTATGGCATTGAGCTCGATTA AAAAAATAAGTTATGAGGGATATTATTGATAATTAGATCATCTTTTAATGATATCTTGTCATGTTCTTTTTGGTCTTCCT CTACCCCTCTTCACAAGACTAAAAACCATGTTATCAGATTGTAACTGTTACAAGTTCTTTGTCTAGGATCTTTTTCTTCC ATCTGTGTTTTCATAATGAGTTTATGCTGCTCGTCAATGTAGGTTGCTCTTGAAAGGTACCAAAAAATGAGAGGCGATGC CCCTGAAAGATTGGTCTCTGGATCTGATGATTTCACCATGTTCCTTTGGGAGCCCTTTGTCAACAAGCACCCCAAAACTC GTATGACAGGTCATCAGCAGGTACAAGTTTTTCCCTATATTTTTCTTTATAATTTTAATATTAATATTTCAATTCAATCA GAATAAACCTGAATGATCTTTTCTTCAAATTGCAATGTGACTTCCGTTTGTACCAGTGTTATTGCTTAATGAAACGGGAT TTTAAAGAGTTTTCTGATGTAACACAGCTGCTTGATAATTCCATCTTTTAGGCTTTATGATATAATTAAACTTCTTTGCT CACAGCTTGTAAACCATGTCTATTTTTCACCTGATGGGCAATGGGTGGCAAGTGCATCTTTCGATAAATCTGTGAAGTTA TGGAATGGCACTACGGGGAAATTTGTTGCTGCCTTTCGTGGCCATGTTGGGCCGGTTTACCAGATCAGGTATACACCATA AATCCTTCCATCTTATTTCGAACTATTTCATTTTAGAACTGTAATTAAATATATATTGGCCTTTACTGTGCAGCTGGTCT GCTGATAGTAGACTTATTCTAAGTGGCAGCAAGGACTCTACACTTAAGGTAAGCGCAATTTTAATTTTCCTTCACGGGAA GATTCATAAAAATATCATTTTACATATTTGGTTCGTTTGTACGTCCAAAGACATCAAATTTCATTTGCAAAACTGGAACT TTGACCTTTTGTTTGGTTTTCAAGGTTTGGGATATTAGGACTCGCAAGTTGAGGCAAGATCTTCCAGGCCATGCTGATGA AGTATGTCTGTTTATTTACCAAAAGCATGAATAGTTTTTGTTCAAAGTATTCCATCTGGTAGCTAACCTAAGTTTATTTT CTTGTGGGGAAGGTTTTTTCTGTTGATTGGAGTCCTGATGGGGAGAAGGTAGCCTCTGGTGGTAAGGATAAAGTGTTGAA GTTGTGGATGGGCTAG
CDS sequence (LotjaGi5g1v0112800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGACAGAGACGACAGAGGTAGTGATGGAGAATAGGGAGATAATCAACAACGTGATGTGCCTTTTGACTGACCCAGA TGGAAATCCTCTTGGTGCTCCTATTTACCTGCCTCAGAATGCTGGTCCACAACAGCTTCAACAGATTGTCAACAAGCTTC TGAACAATGAGGAGAAATTGCCATATGCTTTCTACATATCGGACGAAGAGCTCCTTGTGCCACTTGAAACATACTTGCAG AAAAACAAAGTCTCGGTGGAGAAGGTATTGCCTATAGTTTGTCAACCTCAAGCTATTTTCCGGATTCGTCCAGTGAATCG CTGTTCGGCAACTATTTCTGGTCACGCGGAAGCTGTTCTGACGGTTGCCTTCAGTCCTGATGGGCGGCAACTGGCAAGTG GTTCTGGTGATACCACCGTTCGATTTTGGGACATGAACACTCAGACACCATTGTACACATGCACAGGACACAAGAATTGG GTCCTCTGTATTGCATGGTCACCAGATGGCAAGCATCTTGTAAGCGGGAGCAAGGCTGGGGAACTTCAGTGCTGGGACCC ACAAACTGGAAAGTCGTCAGGCAATCCACTAACTGGCCACAAGAAATGGATAACTGGTATATCTTGGGAACCTGTCCACC TGAGTTCTCCTTGCCGTCGCTTTGTAAGTGCTAGCAAAGATGGGGATGCCCGTATATGGGATGTCACTTTAAAGAAATGT GTTATATGTCTCACTGGCCACACACTTGCAATAACATGCGTCAAATGGGGTGGAGACGGTGTGATTTATACTGGCTCCCA GGATTGTACAATCAAGGTTTGGGAAACCACACAAGGAAAGCTAATACGTGAACTGAAGGGACATGGACATTGGGTTAATT CTTTGGCATTGAGCACTGAGTATGTTCTTCGCACTGGAGCTTTTGATCATACTGGAAAACAATATTCGTCGCCTGAGGAA ATGAAGAAGGTTGCTCTTGAAAGGTACCAAAAAATGAGAGGCGATGCCCCTGAAAGATTGGTCTCTGGATCTGATGATTT CACCATGTTCCTTTGGGAGCCCTTTGTCAACAAGCACCCCAAAACTCGTATGACAGGTCATCAGCAGCTTGTAAACCATG TCTATTTTTCACCTGATGGGCAATGGGTGGCAAGTGCATCTTTCGATAAATCTGTGAAGTTATGGAATGGCACTACGGGG AAATTTGTTGCTGCCTTTCGTGGCCATGTTGGGCCGGTTTACCAGATCAGCTGGTCTGCTGATAGTAGACTTATTCTAAG TGGCAGCAAGGACTCTACACTTAAGGTTTGGGATATTAGGACTCGCAAGTTGAGGCAAGATCTTCCAGGCCATGCTGATG AAGTTTTTTCTGTTGATTGGAGTCCTGATGGGGAGAAGGTAGCCTCTGGTGGTAAGGATAAAGTGTTGAAGTTGTGGATG GGCTAG
Protein sequence (LotjaGi5g1v0112800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQTETTEVVMENREIINNVMCLLTDPDGNPLGAPIYLPQNAGPQQLQQIVNKLLNNEEKLPYAFYISDEELLVPLETYLQ KNKVSVEKVLPIVCQPQAIFRIRPVNRCSATISGHAEAVLTVAFSPDGRQLASGSGDTTVRFWDMNTQTPLYTCTGHKNW VLCIAWSPDGKHLVSGSKAGELQCWDPQTGKSSGNPLTGHKKWITGISWEPVHLSSPCRRFVSASKDGDARIWDVTLKKC VICLTGHTLAITCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYVLRTGAFDHTGKQYSSPEE MKKVALERYQKMRGDAPERLVSGSDDFTMFLWEPFVNKHPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTG KFVAAFRGHVGPVYQISWSADSRLILSGSKDSTLKVWDIRTRKLRQDLPGHADEVFSVDWSPDGEKVASGGKDKVLKLWM G
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 480 | 470 | 6.7E-253 | – | |
| PANTHER | 11 | 480 | 470 | 6.7E-253 | – | |
| Pfam | 22 | 79 | 58 | 1.7E-12 | ||
| SMART | 105 | 144 | 40 | 1.8E-11 | ||
| Pfam | 107 | 144 | 38 | 1.4E-8 | ||
| Gene3D | 108 | 481 | 374 | 1.1E-146 | ||
| CDD | 108 | 479 | 372 | 4.29118E-85 | – | |
| SUPERFAMILY | 111 | 479 | 369 | 1.02E-74 | ||
| ProSiteProfiles | 112 | 481 | 370 | 75.745 | ||
| ProSiteProfiles | 112 | 153 | 42 | 18.529 | ||
| ProSitePatterns | 131 | 145 | 15 | - | ||
| PRINTS | 131 | 145 | 15 | 2.6E-8 | ||
| SMART | 147 | 186 | 40 | 2.8E-11 | ||
| Pfam | 149 | 186 | 38 | 6.2E-7 | ||
| ProSiteProfiles | 154 | 195 | 42 | 12.981 | ||
| SMART | 190 | 234 | 45 | 0.0055 | ||
| Pfam | 196 | 234 | 39 | 5.7E-4 | ||
| ProSiteProfiles | 197 | 235 | 39 | 10.609 | ||
| SMART | 237 | 275 | 39 | 7.9E-9 | ||
| Pfam | 239 | 274 | 36 | 7.2E-6 | ||
| ProSiteProfiles | 244 | 284 | 41 | 12.747 | ||
| PRINTS | 262 | 276 | 15 | 2.6E-8 | ||
| ProSitePatterns | 262 | 276 | 15 | - | ||
| SMART | 278 | 353 | 76 | 0.0037 | ||
| Pfam | 279 | 352 | 74 | 0.089 | ||
| SMART | 357 | 396 | 40 | 5.0E-9 | ||
| ProSiteProfiles | 364 | 405 | 42 | 15.254 | ||
| Pfam | 364 | 396 | 33 | 2.0E-8 | ||
| ProSitePatterns | 383 | 397 | 15 | - | ||
| SMART | 399 | 438 | 40 | 8.9E-11 | ||
| Pfam | 401 | 438 | 38 | 6.7E-8 | ||
| ProSiteProfiles | 406 | 447 | 42 | 17.058 | ||
| PRINTS | 406 | 422 | 17 | 2.2E-7 | ||
| ProSitePatterns | 425 | 439 | 15 | - | ||
| PRINTS | 425 | 439 | 15 | 2.6E-8 | ||
| PRINTS | 425 | 439 | 15 | 2.2E-7 | ||
| SMART | 441 | 480 | 40 | 3.5E-9 | ||
| Pfam | 446 | 479 | 34 | 5.7E-7 | ||
| ProSiteProfiles | 448 | 481 | 34 | 15.287 | ||
| PRINTS | 462 | 479 | 18 | 2.2E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0112800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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