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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR012972
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 7 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.526s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v1079640.1
n.a. PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max] gi|356551165|ref|XP_003543948.1| chr2 17604277 17609335 +
2 domain predictions
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Lj5g3v2169550.1
n.a. PREDICTED: notchless protein homolog [Glycine max] gi|356559633|ref|XP_003548103.1| chr5 31136956 31142473 +
2 domain predictions
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LotjaGi2g1v0265800.1
n.a. Ribosome biogenesis protein WDR12 homolog; TAIR: AT5G15550.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9LF27|WDR12_ARATH Ribosome biogenesis protein WDR12 homolog; TrEMBL-Plants: tr|I1LWS1|I1LWS1_SOYBN Ribosome biogenesis protein WDR12 homolog; Found in the gene: LotjaGi2g1v0265800 LjG1.1_chr2 73527940 73534307 +
2 domain predictions
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LotjaGi5g1v0112800.1
n.a. WD repeat-containing protein; TAIR: AT5G52820.1 WD-40 repeat family protein / notchless protein; Swiss-Prot: sp|Q9FLX9|NLE1_ARATH Notchless protein homolog; TrEMBL-Plants: tr|V7C3M9|V7C3M9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0112800 LjG1.1_chr5 22478363 22489037 -
2 domain predictions
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LotjaGi5g1v0112800.2
n.a. WD repeat-containing protein; TAIR: AT5G52820.1 WD-40 repeat family protein / notchless protein; Swiss-Prot: sp|Q9FLX9|NLE1_ARATH Notchless protein homolog; TrEMBL-Plants: tr|V7C3M9|V7C3M9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0112800 LjG1.1_chr5 22478949 22484798 -
2 domain predictions
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LotjaGi5g1v0112800.3
n.a. WD repeat-containing protein; TAIR: AT5G52820.1 WD-40 repeat family protein / notchless protein; Swiss-Prot: sp|Q9FLX9|NLE1_ARATH Notchless protein homolog; TrEMBL-Plants: tr|V7C3M9|V7C3M9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0112800 LjG1.1_chr5 22478949 22484804 -
2 domain predictions
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LotjaGi5g1v0112800.4
n.a. WD repeat-containing protein; TAIR: AT5G52820.1 WD-40 repeat family protein / notchless protein; Swiss-Prot: sp|Q9FLX9|NLE1_ARATH Notchless protein homolog; TrEMBL-Plants: tr|A0A0B2NZ96|A0A0B2NZ96_GLYSO Notchless protein like; Found in the gene: LotjaGi5g1v0112800 LjG1.1_chr5 22482547 22484798 -
2 domain predictions
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