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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0117200 |
| Transcript ID | LotjaGi5g1v0117200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox associated leucine zipper protein; TAIR: AT5G06710.1 homeobox leucine zipper protein; Swiss-Prot: sp|A2YW03|HOX27_ORYSI Homeobox-leucine zipper protein HOX27; TrEMBL-Plants: tr|A0A0R0KY17|A0A0R0KY17_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0117200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:23951370..23954459) extracted from Lotus japonicus Gifu genome v1.2.
ATCTTTACTCCCACAAAGGCAAATAAAAGGGCCTTGTTGCCCTTGTTGTTTCTTTTTGAGAAGGAGCAAAACACTCAGGA GAGAGGTTTATCTGCCCTTTCCCTGTTCCCCATTATAAAGTAAAACCTACCAAGCTCTAGTTACTCAACCACACCATTGC ACTTAACAACCCCTTTTCTTCAAATTGAACCAACCATACATGGAACTTGCTCTGAGCTTAGGAGACACACCAAAACCTTT CACTTCACCAGATCCACCGGTTCAACTCAACCTTCTCCCTTTCACTCCGGTTCAAAGATCCCAACCATCTTCTTACCTTC AAATCCCCTGGCTCAACCAACCATGTAATAACACAACACATTCTCTTTCTTATTTCACTTAGACTGTGTTTGATTTTCAG TTTAGAAACCCTTTTAAGTGAAAGTAGTTTCAAACTGAAAACCAAACAGATTCTTAATTAGCCCCAAATCGTTACCCAAA CCACAGTTTGTCATTTTGTTTTGATTTTTATTTTTTAGCAGGCGGACCGGCGAGGTCGGTGGACGTGAACCGCTTTCCGG CGACGGTTACCGCGGCGGATGACGGCGACGACGGCGGCACCTCACTGTCGTCCCCGAACAGCGCGGTGTCGCCGTTTCAG GTGGATTTCAGCTTCAGAAATGGTAATGCAGAGTATGGAGGGAGGAACGAGGGTGAGGCTGAGCGAGCGAGTGACGACGA CGAGAACGGGTCAACTCGGAAGAAACTCAGACTCTCTAAGGAGCAATCGGCGTTTCTTGAAGAGAGCTTCAAAGAACAAA CCACTCTCACCCCTGTTAGTTCAACAACACCATTTTTTTTTGTGTGAATATTGTTGGTGATTATTTAATTATTTTTGAAA TTCATGTGCAGAAGCAGAAGCTTGAACTGGCAAAACAGTTAAATCTTCGTCCTCGTCAGGTGGAAGTTTGGTTTCAGAAC AGAAGAGCTAGGTGAGAAGATTGATTACCTTGTGGTTCTTATCCTTCAATTTTTTGTTTGAAACTTAATTTAATTTTAAT TTTTTTTAAAAGTATAAGAAAACTGTAAGTACCCAATTGCGCAATGGGTATGAGTGTCTGTCACAGTGATTAAAAATGAC TGTTTAAACACTCGAACCCATGAGAGGCAGAGTTTGATGTTTGATATTTAGAAGATGTACTTTTTGAGAGACATTTAGCT TTTACCACACCCAAGTCGAGCAGAATTGCTAGGAAGAGTATACATATGTGATAGTAAAAAACAAATTGTAAATTGTAAAA ATTGGGGGTTAGGTTAAAAGATGTTGTGACCAATGTTGTAAATGATTGCAGGACAAAGTTGAAGCAGACAGAGGTGGATT GTGAGTATTTGAAGAGATGCTGTGAGACTCTAACAGAGGAAAATAGGAGGTTGCAGAAAGAGCTTCAAGAACTGAGAGCA TTGAAAACTTCTCAGCCATTCTACATGCAGCTTCCAGCTACAACTCTCACCATGTGTCCCTCATGTGAACGGGTGGCTAC CAATTCCTGTGCCGGTACGGCCACCACCACCAACCAAATCCCAGTGGAGTTGTCTCTTGGAAAGCCCAGAATATTGCCCT TTCCTAATGGTCAAGCCCAAACACAGCAGGCCCAGACCCAGGTCCATAACACGGCTTCATGATTTGATCATATTGACATT TTTTGGTTTTTTGACATCTAATATAACTGACTAATCTCATAGTGGACAAGATATCCAGCTCCCTATTTAATTTATCCTTT GTACATAACTAAGCTTTACCTTTCATTCACCTGTTTTGTGTTACTTTCTTTGTGTTGAAAGAGTCACCTTTTTGTTCATT AACATGTTCGAGCTCACTTGGGTTAGCATAATGGTTAAGTTTTGAGTTTAACTTTCACCTTTCACATATTTGGGGGTGTG TCTAGTAAAATTTTCAATTGGGCGATAACCTTTCTTAGGAAGACACCTAAACTCACTCAGGAGTGAATATCTACTAATCT TTCCGCATGTCACTGGGGCAAACTCAAGAATCTGACTTGTTTTCTTTCTGATCTACCAATTATTTCTTAAAAGAACAAGA GTGCACCTAAGTCTTTTTTGTGAAATGACTCAAATGAGACATTTGGTCTGTTTATTTTTCTTTTCATTTTAGATCTATTG GACAAAAGAGGACGACGTCTTTGGTGGGTCAGTTAAAAACTGACTCACCATGGTGCAATCACTATTTCACATGATAATTA CAAAATTGTCCATTCTTTCTTTTTACTTTCCATTCTTCTCCTTTTCTTGCACCACCTCTACCCTCACCTGAAACGAAATC AGACCCATGTGAACATCAGCACCAATTGGATTTTCAAGGTTTTCCACTCAATATGTCATATCAATTTGGCAAAATTTTCA ATCTTTCTCCCTCTACCACTAATTCACCACTTCCTTCAAGGTTTGCTCAATTTTTCCAGATCCATCACGTTTTCTGGGCT ATCAATTGCATATTCTTAATTTGAGAATTAGGGTTGTGTTCTGCTCTGTTTATCCTCGCCGCCTACGACCTTTGCTCCCG CCGCCTCTTCCTCTCCCACGTCCCCTTCGATCCCTCTGAACTACCGCCCCATCCACCATCGCACTGAGACCTTTTTATTG TTCATCTGCACTGCACTGAAAATTTTGATGGAGGAGATCTGGAACCAAGATTTACTCATGTTCATAAGGTTCAGCAAAGA AAAGGAGAAATTCGTTGAAGGAATCTGGAAATATAAGATCTGGAAGTTTTTGTGGTTACGAATCTATGAAGGAGTACATC CGGTCCCGTTGTGCGGTGGTGGTGGTGGCCTGTCGAAGGTGAGGGGCGGAGGAGAGAGCTGTTGAGGATGGTGGTAGTTG ATATTGGGGTAAAGGACATTTTAATAAATTCAAGATTCAACCAAAATTAATCTCAACCATTTAATTTTAAACTATTATAT CTGATGGTTGTCATTCAACTGAACCACCGTGGTACAGTTAGTTTTTAACTGTACCACCGAACACAACACCACAAAAGAGC GTAGTATTAATTAACCATCACTGTTTTGAATGACCTTCCTCTAACTCTTC
CDS sequence (LotjaGi5g1v0117200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTTGCTCTGAGCTTAGGAGACACACCAAAACCTTTCACTTCACCAGATCCACCGGTTCAACTCAACCTTCTCCC TTTCACTCCGGTTCAAAGATCCCAACCATCTTCTTACCTTCAAATCCCCTGGCTCAACCAACCATGCGGACCGGCGAGGT CGGTGGACGTGAACCGCTTTCCGGCGACGGTTACCGCGGCGGATGACGGCGACGACGGCGGCACCTCACTGTCGTCCCCG AACAGCGCGGTGTCGCCGTTTCAGGTGGATTTCAGCTTCAGAAATGGTAATGCAGAGTATGGAGGGAGGAACGAGGGTGA GGCTGAGCGAGCGAGTGACGACGACGAGAACGGGTCAACTCGGAAGAAACTCAGACTCTCTAAGGAGCAATCGGCGTTTC TTGAAGAGAGCTTCAAAGAACAAACCACTCTCACCCCTAAGCAGAAGCTTGAACTGGCAAAACAGTTAAATCTTCGTCCT CGTCAGGTGGAAGTTTGGTTTCAGAACAGAAGAGCTAGGACAAAGTTGAAGCAGACAGAGGTGGATTGTGAGTATTTGAA GAGATGCTGTGAGACTCTAACAGAGGAAAATAGGAGGTTGCAGAAAGAGCTTCAAGAACTGAGAGCATTGAAAACTTCTC AGCCATTCTACATGCAGCTTCCAGCTACAACTCTCACCATGTGTCCCTCATGTGAACGGGTGGCTACCAATTCCTGTGCC GGTACGGCCACCACCACCAACCAAATCCCAGTGGAGTTGTCTCTTGGAAAGCCCAGAATATTGCCCTTTCCTAATGGTCA AGCCCAAACACAGCAGGCCCAGACCCAGGTCCATAACACGGCTTCATGA
Protein sequence (LotjaGi5g1v0117200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELALSLGDTPKPFTSPDPPVQLNLLPFTPVQRSQPSSYLQIPWLNQPCGPARSVDVNRFPATVTAADDGDDGGTSLSSP NSAVSPFQVDFSFRNGNAEYGGRNEGEAERASDDDENGSTRKKLRLSKEQSAFLEESFKEQTTLTPKQKLELAKQLNLRP RQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSCA GTATTTNQIPVELSLGKPRILPFPNGQAQTQQAQTQVHNTAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 13 | 247 | 235 | 7.6E-113 | – | |
| PANTHER | 13 | 247 | 235 | 7.6E-113 | – | |
| MobiDBLite | 64 | 83 | 20 | - | – | |
| MobiDBLite | 95 | 126 | 32 | - | – | |
| Gene3D | 99 | 176 | 78 | 1.1E-18 | – | |
| MobiDBLite | 103 | 126 | 24 | - | – | |
| SUPERFAMILY | 114 | 178 | 65 | 9.39E-19 | ||
| ProSiteProfiles | 117 | 177 | 61 | 17.734 | ||
| SMART | 119 | 181 | 63 | 2.9E-16 | ||
| Pfam | 121 | 175 | 55 | 9.1E-16 | ||
| CDD | 121 | 178 | 58 | 4.49196E-17 | ||
| ProSitePatterns | 152 | 175 | 24 | - | ||
| CDD | 170 | 209 | 40 | 0.00120193 | – | |
| SMART | 177 | 220 | 44 | 4.5E-26 | ||
| Pfam | 177 | 211 | 35 | 1.8E-10 | ||
| Coils | 183 | 213 | 31 | - | – | |
| MobiDBLite | 263 | 282 | 20 | - | – | |
| MobiDBLite | 264 | 282 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi5g1v0117200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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