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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0117600 |
| Transcript ID | LotjaGi5g1v0117600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Growth-regulating factor; TAIR: AT2G42040.1 WRC protein; Swiss-Prot: sp|Q9FRG8|GRF9_ORYSJ Growth-regulating factor 9; TrEMBL-Plants: tr|A0A151QTU9|A0A151QTU9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0117600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:24185394..24188739) extracted from Lotus japonicus Gifu genome v1.2.
GTTGCGGGGCCCACCAATCCCCTTCTTAAAAGTATAAACGATAGAGCCACCCACTCCTTCAATCTCATCGATCACCTCTC TCAGTCCTCTCTTATTCTTTCAATAAAATCTTTTTTTTTTCTTTTTTCATTTAATTTCTTATTTTTCCTATTTGCCAGTT CTCCCTCTCCCACCCTGGCATCCTCGTCCGTACTCTGTCTTTTTCCTGTCCCTCTCTCTTCCACCGGCAACCTCCCCACC CAGTCACCCTCCCCACACGTGCCTCCCATCCCAGACCTCCATCACACGTGCCGCCTCACCCACACAACACACCCCTTTCC GTGGTGCAACAAATAAAAAGCCACCACCACCAGACAGAAATCCAGAGCTGCACAGCACAGCATATACGGAGAGAGAAACT GTGTGTCTGTGAAGTGTCTGTTTGTGTTCGCTGGAAATGAGAGTAAAAAAAATTCATTCAAGAGCATGAATTTTTCTTCG GGCATGAAGTAAATGGATATCTACTATTGTAAGTGGCAGAATAACCTTGTTGATTCAGTTTTTGTCGCTTCGATTAGTTA ACAAATTTTCCCGTGTGTGCGCTTTTTCACTCTCTTTTATTGCTTTCCCAGAAATCTGAACTGAGAGATCGATTCTGTGG TGTTTGAGCTTGAGTTTGTTGGTGTGTGTTTGGGTTTGAATCTGGGTGTGGGATAGGAGAAGTTCCCATCTTGCACCGAT GAGGATCCGGAAGAGGCAAGTGTCTCTTTCTCTTTTGCCAGTGACACACTCAGATCCCAACCTGATTAGCCGGTCACCGG TCCTGGTGCAACTCCACGGTGCTGCAACCACCTCACCGAAACCTTCTTGCACTCATGCCTCAGCTACTGCACTGATGCTC CTCTCAGATCCTCCTGGGCCGTCCGATCATCCTCGCAGACCGATCGAGAAACCAACCGACGGCTGTGATGATCCCTTCAG TGATAGCGAAGCAAACAGGAGGCAGCACAAGAAGCAAGAATGTTTGGTTAGTAAAAAAAATCACATGAAATCATTTTAAT TTTCACTTTTTTTATTTTTTGGGGTGTGAGTTTGTGAATTTAGTGCACTTTGGTCCAACCTTTGGGAAGGGGTTGGTGTA ATTTTGTATTTTTTTTTTCAATTTTACACTCACAAAGGGGCAGTAACTAACCATGTGTTAGTGGATCCTATATTGTTTTC TTGGCGTGTTTGATTTGCAGGTGGAAGATGGAGGAGGGGGACATAAGGTTAATGATTCCAGGTAAGAATGAAACCAAGAC ATGAATTATATAAAATTATATTTTTGATAAATTATTTCCTCTCTTGTTCTTTCATGAAATGTGGCAGTAAATTACTAAGG TGAAAACATGGAGACCCGTATAAGAGTATTTTAACCGGCATGGGAAAAGAAATAATATTTTTTATAATTATTTATTGACC AGCAATACTGTTAGTGGATATACTGTTGAAAGTGTATTAATTATAAGCTTTTTGTAGCCAGCATACCCTCCCATCTAATC CAATGGTTTTTTTCTCAAAATTAGCTAGCTACCATTTGGCATTATGGTGCACTTGCAGTAGAACCAAATGCTGGTCCCAG AGAGCAACATATTCTGTCAAAATATTACATTCCTTCTTCTTTTTCCACACACCCTTTCCCTTTCGGCCGCAAATTTTGAG TGTGCATCTATAAATGTGTGTGGTTATGAGTCTCTTATCTGGGGTCTTCTTTGTTTGTAGGAAAGAAGTCGTCTTGTGTT CAGAAATAATGCCAGCTAAGACGATCTTCTCACCTTCAATCCCTTATAGTTCTAAACAAGGTAACAAAACATGCATGTTT TGAAATAATGCATTAATATGTCACTTGTTGACTTGACTCAAGACTATCATGATCACTTCTACATACTTTTTCTTTCGTCT AATTTTTACTCACTTTTTTCTTCATATTTTTCTATTCTTTTTCCATTCACACTCATCATATTTCTCACTTTTCTGAGTTT TGTATGCTATCTCTATCTGGGTGTAATTTGGGGCATCAATGTGCTATTCTCGTTGATATGGCAGATGGGAGATGGTGCGA GGCAGAGAAAGCCTTTCCTCTAAAGAAACGAAGAGGGAGCTTTGAGAATGTAACCAAGGTCAACAATAACAACAATGATA ACAGTAGTAATAAGAAAAAGAAGAAGACGAGGATGAAGATGAGCAAGAAATGCTCAGTGCAAGATGACAGCGATGACAAC AATGAAGAGAGTGAAGAAGAGGAAGAAGAAAAGGCCGTGAAAACAAAGAAGAGAGTGAGGGGTGGTGCAATTATGGAAGG GTCACGGTGCAGTCGTGTGAATGGGAGGGGATGGAGGTGCTGTCAACAAACACTGGTTGGATATTCACTTTGCGAGCATC ACTTGGGGAAAGGAAGGTTGAGAAGCATGACAAGTGTGGGAAACAGATCTTCTGCTACCACAACACATGGTGCTGCTGAA CTGAAGAAGAATCACGTGCAAGACCACACGGCATTATCTAAATCTTCACCTTCATTCCCTGAGAAGAAAACCAAGTGTGC TGGAAGTGAAAGTGATGAAGAAGATAATGATGATGAGAAGAAGCCACTTATTGTCACGAAGAAGAAGCTTGGAATGGTGA AAGCGCGTTCGATAAGCAGCTTGCTTGGACAAGCTAACCAACCTTGAAATTGTTGGAATATTTAATCAAGTAAGGACTAT CTGAACTGAGTGATGAAAACAATATAATCAACGGTTTATTATTTCATGCATAGAAATTAAATAATAATGACCATGTCTTA TAATTGATTTGCATTGGTGTTATGGTTCCCTAATATTGTTTTTTCCATGTGTTTTCCATGCCATCGATCGTTTTCTTGTA TATATCTTGTGATGATATTTATTATTTATCAATTATTCTTATTTCCAATATGAGATATATACTCTTATTATCAAAGAATT GGGTCTAGGCACGATTGATTTCATAGTTGATTGCAGTATTTGTGTATATATGCACCCATCCACTTGATTAAATTATATAA CGGAGCTAGTTATATTATACTTCAGAGGTGGACTGGATCAAAGATCACGGTGTCTTCTTTGACCAACGAAACATCCGGAA ATTAGTGTATGATCACGTGATACACCTCTATTTTTTTTCATGTATCATTTTAATTTTTATTTTCTTCTTATCTCTCATGT ATTTACATCACACTATTACTTATTATATCACTTATTTTTCTTTATTCTATTTCTATTTCTCACTAATAAGTAGAGGTGAA AAGTGGAGAGTTTTGCGAAGAGAACAAATTTGCATTGTGATCAACAAGATAAGTAAGTTTATAAAA
CDS sequence (LotjaGi5g1v0117600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGATCCGGAAGAGGCAAGTGTCTCTTTCTCTTTTGCCAGTGACACACTCAGATCCCAACCTGATTAGCCGGTCACC GGTCCTGGTGCAACTCCACGGTGCTGCAACCACCTCACCGAAACCTTCTTGCACTCATGCCTCAGCTACTGCACTGATGC TCCTCTCAGATCCTCCTGGGCCGTCCGATCATCCTCGCAGACCGATCGAGAAACCAACCGACGGCTGTGATGATCCCTTC AGTGATAGCGAAGCAAACAGGAGGCAGCACAAGAAGCAAGAATGTTTGGTGGAAGATGGAGGAGGGGGACATAAGGTTAA TGATTCCAGGAAAGAAGTCGTCTTGTGTTCAGAAATAATGCCAGCTAAGACGATCTTCTCACCTTCAATCCCTTATAGTT CTAAACAAGATGGGAGATGGTGCGAGGCAGAGAAAGCCTTTCCTCTAAAGAAACGAAGAGGGAGCTTTGAGAATGTAACC AAGGTCAACAATAACAACAATGATAACAGTAGTAATAAGAAAAAGAAGAAGACGAGGATGAAGATGAGCAAGAAATGCTC AGTGCAAGATGACAGCGATGACAACAATGAAGAGAGTGAAGAAGAGGAAGAAGAAAAGGCCGTGAAAACAAAGAAGAGAG TGAGGGGTGGTGCAATTATGGAAGGGTCACGGTGCAGTCGTGTGAATGGGAGGGGATGGAGGTGCTGTCAACAAACACTG GTTGGATATTCACTTTGCGAGCATCACTTGGGGAAAGGAAGGTTGAGAAGCATGACAAGTGTGGGAAACAGATCTTCTGC TACCACAACACATGGTGCTGCTGAACTGAAGAAGAATCACGTGCAAGACCACACGGCATTATCTAAATCTTCACCTTCAT TCCCTGAGAAGAAAACCAAGTGTGCTGGAAGTGAAAGTGATGAAGAAGATAATGATGATGAGAAGAAGCCACTTATTGTC ACGAAGAAGAAGCTTGGAATGGTGAAAGCGCGTTCGATAAGCAGCTTGCTTGGACAAGCTAACCAACCTTGA
Protein sequence (LotjaGi5g1v0117600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRIRKRQVSLSLLPVTHSDPNLISRSPVLVQLHGAATTSPKPSCTHASATALMLLSDPPGPSDHPRRPIEKPTDGCDDPF SDSEANRRQHKKQECLVEDGGGGHKVNDSRKEVVLCSEIMPAKTIFSPSIPYSSKQDGRWCEAEKAFPLKKRRGSFENVT KVNNNNNDNSSNKKKKKTRMKMSKKCSVQDDSDDNNEESEEEEEEKAVKTKKRVRGGAIMEGSRCSRVNGRGWRCCQQTL VGYSLCEHHLGKGRLRSMTSVGNRSSATTTHGAAELKKNHVQDHTALSKSSPSFPEKKTKCAGSESDEEDNDDEKKPLIV TKKKLGMVKARSISSLLGQANQP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 8 | 13 | 6 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 343 | 325 | - | – | |
| MobiDBLite | 53 | 107 | 55 | - | – | |
| MobiDBLite | 63 | 107 | 45 | - | – | |
| PANTHER | 84 | 342 | 259 | 4.6E-69 | ||
| PANTHER | 84 | 342 | 259 | 4.6E-69 | – | |
| MobiDBLite | 156 | 211 | 56 | - | – | |
| ProSiteProfiles | 219 | 263 | 45 | 20.691 | ||
| Pfam | 221 | 261 | 41 | 1.9E-15 | ||
| MobiDBLite | 257 | 319 | 63 | - | – | |
| MobiDBLite | 258 | 275 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Developmental process | A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. |
Expression pattern of LotjaGi5g1v0117600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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