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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0120500 |
| Transcript ID | LotjaGi5g1v0120500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151U9A5|A0A151U9A5_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi5g1v0120500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:25165309..25169890) extracted from Lotus japonicus Gifu genome v1.2.
ATTCATTCTACAATTCTCTGATTCAATATGGTATCAAGAGCACTCTGAATTTTCTTCCGCTTCGTCTCTGTTTTCATCGC TCTTTTTGAGCGTTTTTCTTCATCTTCTTCGTGCTTGCCTCTGCAACACGAGCTTCAGGATCATGGAGAATTCCTCCAAT CCGTTTTTTCTGCACCATTCTGATAACCCTGGCTTGATTCTTGTGTCTCAACCTCTCAATGGCGAGAATTACAATTCCTG GAATCGTTCTATGATGATCGCTCTCAGTGTGAAGAACAAGCTTGGTTTCATCAATGGTGATTTTCCACGACCTGCAGATG ATGATCCGCTTCTCCAGTCTTGGATTCGTAATGATCATGTGGTCATGTCTTGGATCCTCAACTGTGTATCCAAGGACATC GTCTCTAGTGTCATCTGTTGTCGATCTGCAAAGGAGATCTGGCAAGATCTTCAAGATCGTTTTCATCAACCTAATGGTAC TCGGATCTATCAGTTGAAGAAGGATTTGCTGAATCTTCAACAGGAATCGCTCACTGTGACTCAGTTCTACACCAAACATA AGGCGATTTGGGATGAATTGCAAGATTATCTTCCTCAACGAAGCTGTGTTTGTGGTGAAAATCGAGTTCTGCTCGATTAT TTTCAACAAGAACAGATCATGCACTTTCTGATGAGCCTTAGTGATTCGTATAATCAGATTAAGAGTCATGTTTTGCTGAT GAATCCTTTGCCTCCTATGAATCGCGTTTTCTCGATGGTCCTGCAAGAGGAGAAACAACGCGAGATTGCTGCCAGATCTG CTGATCTGAATTCTGCTTTTGCTGCTCAGGCCACAAACTCTGGGAAATCTGGAAAGAAGGATCGTGACAGGCCTCTTTGT AGCTATTGTGGAAAGCTTGGTCACTCAGTTGATCGTTGTTTCAAGAAGCATGGTTATCCGCCAGGTCTCAATTTCAAGAA CAAGTCTTCTGCAGTTCATCATGTTGATTCATCTGAAGTTTCTGGATCATCAGTGCCTCAGGATCCTCCTATTACATCAA GTCAGTATCAACAATTACTGTCTCTGCTGACTGCACAACTTGCAACTTCCCCGATGCCTTCTTCGTCCACTTCTGAGCCT CTGCAGATTCCTTCACCAACTGATCTTAAAGGTTTTGTTTTCTCTGCTTCTTCTGATTTTTCTCACAAAACTTCTGTTTG GATTCTAGATTCTGGTGCTAGTTGTCATGTTTGTTTTCACCTTTCTAGTTTTGAGTCATATCATTCTGTTCGTTCACATA CCATTTCTTTGCCTGATAATACAAAAGCTCGAGTCACTCACATTGGTACAGTCAAATTAGGGAATTCTCTAATTCTTCAC AATGTTTGTTATGTGCCTACATTCACTGTCAATTTGTTGTCTGTTAGTGCTTTGTTAGAAAATCCAAAGTATTCAATTCA TTTTTTCCACAAAACTTTTGTGATACAGGAAAACAAATTGAAGACGATTGGCAGGGGTGACACCCACAATGGTCTTTACT ACTTGCACGCATCTTCCAACAATGTTTTTAGTGCATCAACCTCACCTTTATCTGTTTTGAATTCTCTTTGTAATCAATCT GTTTTTCCTTCTCATTGTAACAAATCCACTTGTACTGCTGCATTATGGCATGCACGCCTAGGGCACCCTTCCTATAATAG GCTAAGTTTGTTGTCTTCTACTATTCATGGTAAGATTCCATCTTCTATTAATGAAAATGTTTGTCCTGTTTGTCCTCTTG CAAAGCAAAAACGATTGCCTTTTGTTTCTGAAAATCATTTTGCTAATCATTCTTTTGATTTAATTCATTGTGATGTTTGG GGACCTTTTCATGTTCCCACTCATGTTGGCCATCGTTTTTTCCTGACCATTGTTGATGATCACTCGAGGTTTACTTGGAC TTTTCTCATCAAGCATAAATCTGAGGCACCACTTGCAATTATGGCTTTTTTCAAGATGGTGCAAACACAATTTGGGAAGG TCATCAAGATGGTTCGCACTGACAATGCTAAAGAGTTGCAGTTGACAGCTTTTCTTGAGAAACAGGGCACTTTACATCAG TTTTCTTGTGTGGAACGGCCACAACAGAATTCTGTAGTGGAGAGGAGACATCAGCAGTTGTTAAATGTTGCACGATCATT GCTTTTTCAGTCGCATATGCCGCTTGTTTTCTGGGGGGAATGCATATCCACAGCTACACATCTCATCAATTTGATTCCAA CACCGAATTTGCATAACAAGTCACCTTCCACATTGTTGTATCAACAAGATCCGTCTTATGACCATTTACGAGTTTTTGGG TGTCTTTGCTTTTCATCTACATTACCCTCCACAAGGCATAAATTTTCTCCTCGGGCTGTCCCTTGTGTGCTGGTTGGGTA CAAGCAAGGATACAAAGGGTACAAATTATACAATTTGACCACTAAGACTTTCCATATCTCTCGCGATGTGGTGTTCAACG AGAGCATTTTTCCTTTCCAAAATACACGGCCATATGTGTATTCTCAGGATCCTTTTTTGGTTCCACTTCCATAAGTAGGC CTTTCAGTACCACCATATGATGTTCCACAACCTGAATCTGTACCAGTCCCTTCAGCAGATCACATTCCTGCAACTCCTTT AGTTTCTGAAATAGTGGCACCTTCTCCTGATGCAATAGTCCCACCCCTTGCGGTCCGCAGGTCCACTCGTGTGAGACATC CACCAGGGTATTTGGCTGATTATGATTGTCCACAACAGACAACACCTCATCCACTTTCCACATACTACTCTTATGACAAG CTTACACCTTCTTACAAGGTCTATTCTGTCAAAGTTGCATCCCACTATGAGCCAACTTATTTTCATCAAGCAATTCAGTA TCCTGAGTGGCAGCAAGCCATGCGTACCGAATTAGCTGCTATGGAAGCAAATCAGACATGGGATGTTGTCTCTCTACCTC CTGGCAAACATGAGATTGGAAGTAAATGGGTTTACAAGCTCAAACTTCATCCTGATGGTTCCATTGACCGACACAAAGCT CGCCTTGTAGCTAAAGGCTACACCCAGCAGAATGGAATTGATTACATGGATACCTTTTCCCCTGTTGCGAAGATCACTAC TGTTCGCATGTTACTTGCCTTAGCTGCTATGTACAAGTGGGAACTATTTCAGCTAGACATTAACAACGCTTTTTTGAATG GTGATCTATTTGAAGAAGTATACATGAAGATCCCTCAAGGATATGATGTCAAGGGGGAGAATCTGACATGTAGATTGAAG AAATCAATCTATGGCTTGAAGCAAGCTTCACGCCAGTGGTTCGCAAAGTTCTCTTCTGTTCTTACTCAACATGGTTTTCA GCATTCTTATCATGATTACTCATTATTTACCAAAGGGTCTGGAGACACTTTTGTTGTTTTACTGGTGTATGTCGATGACA TTATTGTCTCGGGTCCTAATGCCACAGAAATAGACTCAGTCAAGCAATTGCTTAAATCCGCTTTCAAGCTGAAAGATTTA GGCAAACTGAAGTTTTTCCTTGGCCTGGAAATAGCATATTCTGCTACTGGGATTTCTTTATCTCAACGGGCATATGCTTT GAGTCTTTTGCACGACACTGGATTCACCGATTGCAGGCCGACATCTTTACCAATGGATCCTAACCTCAAGTTGTCTTCGG ATACCAGACCTGAACTGGCTGACTCATCTCAATATCGCAGGCTCATTGGACGCCTTTTATATCTTACCATTTCAAGGCCT GATATAGCATTCACTGTGAACAAGTTGAGCCAGTTTCTTTCTAAACCAACAACAACACATTTGGATGCCTTGCATCACTT GCTGCGGTATTTGAAAACAACCCCTGGCCAAGGCTTTTTTTTTCTCGGGCAGCAACCCCCTCTCTCACAGCTTACACCGA TGCTGATTGGGGTAATTGTGTTGATACTCGTCGCTCCACAACAGGCTTCTGCATATTTTTTGGTTCATCCCTCATCTCAT GGAAATCCAAGAAGCAAGCCACGGTGTCTCGTTCTTCTGCCGAAGCAGAATATCGGGCACTTGCAGCCGTGTCTAGTGAA CTGAAGTGGCTCCAAGGCTTGTTACGTGATTTCCAGGTCCCATGTTCTTCAGCCATGGTGTTATGTGACAGCCAGTCTGC CATCCATATTGCGTCTAATCCCACATTTCACGAAAGAACCAAACATATCGACATTGACTGTCATTTTGTCCGCGAGCTGG TACAACAAGGTGTGCTCAAGTTGATTCATGTCAGATCCAAACAGCAGCTTGCAGATGTCTTAACTAAGCCTCTGCCCTTG TCACCTTTTCAACCTCTTCTCTGCAAGATGGGTTTGCTTAACATCTACACTCCATCTTGAGGGGGAGTATTGGAGTATTA ATCTGATTCTAGATTAGTTAGTTTGTTAAGTTAACTGATAATTAGTTTTACTTAATTTGTTATAGTCAGTTAGATACAGC TGGCATGAGCTGTTAGGTAGTTAGTCAGTTAGATACAGCTGACATGAGCTGTTAGGTTCAGTTTTGATAGTTACTTTATG GCTTAATTGCACTTTTGCTCCC
CDS sequence (LotjaGi5g1v0120500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAATTCCTCCAATCCGTTTTTTCTGCACCATTCTGATAACCCTGGCTTGATTCTTGTGTCTCAACCTCTCAATGG CGAGAATTACAATTCCTGGAATCGTTCTATGATGATCGCTCTCAGTGTGAAGAACAAGCTTGGTTTCATCAATGGTGATT TTCCACGACCTGCAGATGATGATCCGCTTCTCCAGTCTTGGATTCGTAATGATCATGTGGTCATGTCTTGGATCCTCAAC TGTGTATCCAAGGACATCGTCTCTAGTGTCATCTGTTGTCGATCTGCAAAGGAGATCTGGCAAGATCTTCAAGATCGTTT TCATCAACCTAATGGTACTCGGATCTATCAGTTGAAGAAGGATTTGCTGAATCTTCAACAGGAATCGCTCACTGTGACTC AGTTCTACACCAAACATAAGGCGATTTGGGATGAATTGCAAGATTATCTTCCTCAACGAAGCTGTGTTTGTGGTGAAAAT CGAGTTCTGCTCGATTATTTTCAACAAGAACAGATCATGCACTTTCTGATGAGCCTTAGTGATTCGTATAATCAGATTAA GAGTCATGTTTTGCTGATGAATCCTTTGCCTCCTATGAATCGCGTTTTCTCGATGGTCCTGCAAGAGGAGAAACAACGCG AGATTGCTGCCAGATCTGCTGATCTGAATTCTGCTTTTGCTGCTCAGGCCACAAACTCTGGGAAATCTGGAAAGAAGGAT CGTGACAGGCCTCTTTGTAGCTATTGTGGAAAGCTTGGTCACTCAGTTGATCGTTGTTTCAAGAAGCATGGTTATCCGCC AGGTCTCAATTTCAAGAACAAGTCTTCTGCAGTTCATCATGTTGATTCATCTGAAGTTTCTGGATCATCAGTGCCTCAGG ATCCTCCTATTACATCAAGTCAGTATCAACAATTACTGTCTCTGCTGACTGCACAACTTGCAACTTCCCCGATGCCTTCT TCGTCCACTTCTGAGCCTCTGCAGATTCCTTCACCAACTGATCTTAAAGGAAAACAAATTGAAGACGATTGGCAGGGGTG A
Protein sequence (LotjaGi5g1v0120500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENSSNPFFLHHSDNPGLILVSQPLNGENYNSWNRSMMIALSVKNKLGFINGDFPRPADDDPLLQSWIRNDHVVMSWILN CVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLLNLQQESLTVTQFYTKHKAIWDELQDYLPQRSCVCGEN RVLLDYFQQEQIMHFLMSLSDSYNQIKSHVLLMNPLPPMNRVFSMVLQEEKQREIAARSADLNSAFAAQATNSGKSGKKD RDRPLCSYCGKLGHSVDRCFKKHGYPPGLNFKNKSSAVHHVDSSEVSGSSVPQDPPITSSQYQQLLSLLTAQLATSPMPS SSTSEPLQIPSPTDLKGKQIEDDWQG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 237 | 235 | 6.1E-71 | – | |
| PANTHER | 3 | 237 | 235 | 6.1E-71 | – | |
| Pfam | 11 | 58 | 48 | 2.8E-21 | ||
| Pfam | 67 | 213 | 147 | 1.6E-14 | – | |
| SUPERFAMILY | 229 | 267 | 39 | 1.99E-5 | ||
| MobiDBLite | 313 | 346 | 34 | - | – | |
| MobiDBLite | 313 | 330 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0120500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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