Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0122100 |
| Transcript ID | LotjaGi5g1v0122100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bromo-adjacent-like (BAH) domain protein; TAIR: AT5G11470.1 bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|Q9LYE3|ASI1_ARATH Protein ANTI-SILENCING 1; TrEMBL-Plants: tr|A0A151TDS8|A0A151TDS8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0122100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:25701570..25705459) extracted from Lotus japonicus Gifu genome v1.2.
CTTCCCACTTTCTAAAAAGTGAGGTTAGGGGCTTTTAAAAAACAAAAAATCTAGAATATTCTAAGGAGAAAGTAGAAAAA TAAAGGTATAAAAGAGTAAATCTAGCGTAACCCAGGACAGCCGACAGAATTGCCGCCGTCGTGTCATAAGGTTGTTGCCG TGCTAGGGTTTAACTGTGTTGTTGCTCTACCTCAGATTTAGCTCGCACATCCCTGCTAACTTGTTTCATCCTCTTCTCTT CTCTTCTCTTCTCAGACAGACTGACATGGCAGAAGAGAGCATCGAGTTCAAGTGGGGGAAGAAGCGAGGAATCGGAGGGA AAAGGAAGGACGTGCAGTTCTACGAGTCTTTCACCTACGACGGCGTGGACTACGCGCTTTACGACACCGTTTACCTCGAC AGTGGCGGCGAGTTCGAGCCTTTCGTCGGCAAGCTCATCAAGATCTTTGAGAATCGCGACAAGTCGAAGAAAGTGAAGGT GCAGTGGTATTTCCGTCCCGGCGAGATTCGCAAGTTCGTCGAAGGGATCGAGACGCGCCACAACGAGTTGTTTTTTGCGT GTGGTGAAGGCCTTGGACTTGCCAATGTCAATCCTCTGGTAATTCGATTTCCATCTTTTTTTAATGCTAATTTTATGCTT GCCAATGTCAATTCTCGGGCAATTTGATTTCCATGATTTTTGAATCTTCTCAAATTTGGGTTTGAATTTATGCTAATTTT ATGTTTTATATGATTTTTTTGGGTACAACTTATGTTTTATATGATGATCCCCTTTGTTGTGTTCTGTGATTATTGAAATT TGACATATCCCTCTGTCTTTGATACTAATGCTTTCTGGGTTCCAAGTGTTAGAATTGGCCGCATGTAGGGGATGGGTAGT TCTTTTGAGTGAAGGCTCAGGGTTCAAACCCTGGTGAGTTAACTAATTTACTAACAATTAACAACTAACATTCGCCTGTA AAAAAAATTATAAAAAATGTGGCTTTCATTTTCAGCACATATCTTTGAATGTAGAAAGTATTGAGAAGTCACACATTGAT CAGAGATGTAACCTAGTAAATGTTTATTTAGAGTAGAGTTAGGCCTAAGAGCATCCGCAACAAAGAAACTTTGACATGTC ATCTAAAATAAAGTTTCTTAACTGTTGCAGAAAATGAAGTTTCTCCACGTGACAAGCAACTTTGCTCCAACTTTGTTCAA AGTTTCTCTTCCAAATTTAATGATTAAAAAATAAATAAAAAACAAGAATTAATTAAAATGAAATATAAATAATGAAAATA TAAAGAGGTGAGGTATATTATGGGGTCCATTTAAGAAACTTTTTAGAGTTGCTGGTGGAGTAAAAAGTGAGTAGAGTTGA TTAAAGCTGTTTAAATGACGTGGCATTATCAAAATTTAAATTAGAAACTCTAATGAGTTTCTTGGATAATGATGGTCTAA CCTTAATACTAAGAGAAACAAAAACAAGTTCATTTATAATTGTTAACAAAAACAGAAAATATTTTCTCAATTTGTCCATT GACTTGAAAATTCAGAGGTAAAAATCCAATGGTCTTGGATTTCATTTTCATTTTCTTTTCAAGTGTCCTATTATGATAAC GAGTTGAATTTCATGATTGGGGATCTGGTTCAGATATATCTATTTGAACTTTAGTGATTTTATTATTTCGTATCTATTTT ATTTTGATTGGGGGTAGATACAATACTTTCATTTGAGTAAGCCATTCAATTTCTCTTAATTTACTTTACACTAGCCAATC TAACTCAAACTCACTATTTTGTAAACCATATCAGGAAGCTATTGCAGGAAAATGCAATGTTGTTTGCATTTCTAAAGACA TCAGGAATTCACAGCCATCAGATGAAGCACTTCAAAAGGCTGATTTTGTATTCCATCGTTTCTTTGATGTTGGGCAGCGC AAAATATTGGATACTATAGATGACAAGAGTGCTGGAATTGAAGGTATGTATGTGGTTTAGTTCATTTAAAAAGTGTTCTG TTTGATTGATTAGTTTCTGAATAGCATGATTTACCTCTGTGCACAAGGGATTTCTTACACACTTGGCATTCCAACTTGTT TTTTGTATTATCCTTACCTCGTGCTTTATGAGATTAGATAAAATTTGCTTTTAAGGAAGGTATAACTCACAAGATTGTCC ATGATAGCTTCTGTTATAGTATTTTGCAGTCAAATTTATGTAATTGGGAGGGATTTTGAGAAACTAAAAAGGTTATCTTC TTTCGCTTTTTATTTGTCTTCCATGATGTGTCCCCACTTTTTTCTCTGTTGGATTAATCCTTGCTTATGCCTGATGGTGT GGCCCTTGCCACAAGGTGCTGAAAGTTAGATTCCAACCCTTACTGTGCAAGGAAAGTTAGCCAACATGGAGCACTGTTGA CTTGATTTTTTTCATCATTACTAATGAGATTGTTTAGATGTTACGCATAGCGATAATTCATATTTTCACAGGAGGTGTAA GGAGTAAGGACCTAAACAATAAAGAATAAGTCTGACTCAGCTGGTTGTAAATTGCTTGCTGTATATCTAATTGGGTGTTT TTCTCATCTGTTGCAGTAAAAGATATATTTAACAAATGAGATCGTGAAATCCTTGTTCATGTTGTGAAACTGCGTGTAGA CAAGAAAGAAGTTAGTGGTAATACTATGGCTGGTAGTAAAGTGGCTTTGCAGCTCAATATAAAAACTGCCAGCTTGTAAT TGAAAAGGTAGCTGGCAAATATTTTCACACATTAGTTAACTCAAAATGCTTCCGAAATGGAGGGAAACAACTGTATAGAG ATTTATAGACGAGGAACTATCTATGCTGAGAAGTTATCATTCAGATCTGTTATTGATTTGGAAGGAGCTGAACATGATGT TAGTGTAAGTGAACTTCCTTTCCAAGAAGATGGAACTGAGCAAGCAGCTAGTGTCTTCTAGTTACAAGCACTCACGCAGC TTATGAATCTTGTAGAATTACCAAATATGGAACACAAACATGATAATTATTTATTAAATTCGGTTCCTCTAAATTAATAT TAGTTTTATGGCCTTGTGAACCTCATGTCCTTTTTATGTCGCTTCTTTATTTTGTTATATTTTCTTCTGGATTCGCTTCT TATAATTATTATTAGTCATATAGATTGTGTTCTATATTTTCAAATAACTACTAGAACCGACTAACTTGTGAATACTGACA TTTTAACACCCCACCCAAACATTTTATTCCTAAAACTACCCTTCTCCCCTTTCTTCACTAACGCACTTCCTCTTTCATTC TACTTCACTTTCCCTTTCTCTTCCTTTATCCTTCCCTTTCTTCACCATCCTTTACTTTCCCATTCATTTTCTTCTTTTCT TCATTTTCATCTCCTCTTCTTCCAAGTTGTGTTGTGATTTGTTGTCCTTCTATGTTCATTACCATTCATAACATTGCGTC CTACTTTCTGGTCTAATTCAAATCCATTCATGCCTTCTTGAAGAGACTTTCATGGGATGCACCACCATGGGAAGATCATT CAATGGAGTTGAATCTAAATTATCATTCAATGGAGTTGAATCTAAATTATGAGATTGAAGGTCTGATTATTCGTTTCAAT GATTTGAATGTATTTAGAAAATGGTCAGTTAAACACAAGGTTTGAGAGATTTCATGGCTTGATACTACTTATGTGTGTCC TTCTCTAGACAAGTTACAAACAAAGGGTCGGCACGAAAGTCCTTTCGTGTACGGGTTGTGGAGGGACTTGCGGTAATGAT TCCTTCGACAATACAAACTTTACTACAACGATGTTGTGCCAAATATAAGTTGTGTTTTAATTCTCGAAAAATAAACTTAG GCTTAAATAAGTGTTTGGTCCCTAGCCTTTACACCACTTTTGGTTTAGTC
CDS sequence (LotjaGi5g1v0122100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAGAGAGCATCGAGTTCAAGTGGGGGAAGAAGCGAGGAATCGGAGGGAAAAGGAAGGACGTGCAGTTCTACGA GTCTTTCACCTACGACGGCGTGGACTACGCGCTTTACGACACCGTTTACCTCGACAGTGGCGGCGAGTTCGAGCCTTTCG TCGGCAAGCTCATCAAGATCTTTGAGAATCGCGACAAGTCGAAGAAAGTGAAGGTGCAGTGGTATTTCCGTCCCGGCGAG ATTCGCAAGTTCGTCGAAGGGATCGAGACGCGCCACAACGAGTTGTTTTTTGCGTGTGGTGAAGGCCTTGGACTTGCCAA TGTCAATCCTCTGGAAGCTATTGCAGGAAAATGCAATGTTGTTTGCATTTCTAAAGACATCAGGAATTCACAGCCATCAG ATGAAGCACTTCAAAAGGCTGATTTTGTATTCCATCGTTTCTTTGATGTTGGGCAGCGCAAAATATTGGATACTATAGAT GACAAGAGTGCTGGAATTGAAGTAAAAGATATATTTAACAAATGA
Protein sequence (LotjaGi5g1v0122100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEESIEFKWGKKRGIGGKRKDVQFYESFTYDGVDYALYDTVYLDSGGEFEPFVGKLIKIFENRDKSKKVKVQWYFRPGE IRKFVEGIETRHNELFFACGEGLGLANVNPLEAIAGKCNVVCISKDIRNSQPSDEALQKADFVFHRFFDVGQRKILDTID DKSAGIEVKDIFNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 170 | 169 | 2.6E-33 | ||
| PANTHER | 3 | 174 | 172 | 2.6E-98 | – | |
| PANTHER | 3 | 174 | 172 | 2.6E-98 | – | |
| ProSiteProfiles | 34 | 159 | 126 | 15.66 | ||
| SMART | 34 | 160 | 127 | 4.9E-6 | ||
| Pfam | 35 | 153 | 119 | 6.1E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
Expression pattern of LotjaGi5g1v0122100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…