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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0122400 |
| Transcript ID | LotjaGi5g1v0122400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|A0A072TH07|A0A072TH07_MEDTR Ribosomal protein S4; Found in the gene: LotjaGi5g1v0122400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:25876711..25877800) extracted from Lotus japonicus Gifu genome v1.2.
CCCTTTATACGCGATGTGGTGAATCAGACTGATTCAACGACGACGAGATATGCGATTTAAAACTTGTCGTCTACTTTCAG GAAATGTTCGGAACAGAGAACTTACAATAATACAACGCCGCATTCTCCGAAGATTGAGGAAGAAGAAGAGATCTATTAAG AGAAAGATTTATCCGAGAGAAAATCTTAACAGTTACATCCAATCACAAACTACACGAAAGTTGCCCCTTTTTCATGGGGA TTTACCCATCACAGAGATGCACAGAGGAACAGAACGAACTTCATATATCCCTTTTCTACTCAATCCAGAAACAAGATCGG ACGTTATTCCGGTTCGTCTCCATTTTCGTGAAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATCGAAGGGTTTGTGTG AATAATCGAATGGTAAGCATTACTCGTTTGAAAGTTTCCCACGGTGATCTAATCTCTTTTCAAGAAAATGACGCGAGAAT CCGCGGTGAAGAAATAAGGAGATCTTTCTATATCGAAATATCAGTTGAAAAAATAATAGGCAAATTCCTGGATCACCCGG TAAGAATGTGGAGAAGAACCAAAACAGAATGGTTCCACCTACTAAAAACTAAGCGGGGATGCCGCCTACTACTAAAATCC CGGTTTTTGCAACAACAGTTGCGTTATTCTATGCAAGAAGAAGACTTTGAAAGAACAAAGAAGTTTGGATCCGAAAAAGT ATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGAAGAGGAATTTGTATCATTTCAAATCCCTATTCTTATCGAAGA GAAGAAACGAGAAAAACCGATATCTTCCTACTCGAACAAGAAGTCCTATAGTTTACAACTCTTCTTTATATAGTAATTCG ACCTATTGCTCCTCATCCCCCCATCAGTTTACTATGAAGAGAAGAATCAAAAGGATCGAACTACCTACCCATTATTCGGA GGTGAATCATAGAACACCAAAAGCGGTGGTATTTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAG ATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAAACATATAA
CDS sequence (LotjaGi5g1v0122400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGATTTAAAACTTGTCGTCTACTTTCAGGAAATGTTCGGAACAGAGAACTTACAATAATACAACGCCGCATTCTCCG AAGATTGAGGAAGAAGAAGAGATCTATTAAGAGAAAGATTTATCCGAGAGAAAATCTTAACAGTTACATCCAATCACAAA CTACACGAAAGTTGCCCCTTTTTCATGGGGATTTACCCATCACAGAGATGCACAGAGGAACAGAACGAACTTCATATATC CCTTTTCTACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTCGTGAAACTATTCCTCAAGCAAG GCAGCCGATAAGTCATCGAAGGGTTTGTGTGAATAATCGAATGGTAAGCATTACTCGTTTGAAAGTTTCCCACGGTGATC TAATCTCTTTTCAAGAAAATGACGCGAGAATCCGCGGTGAAGAAATAAGGAGATCTTTCTATATCGAAATATCAGTTGAA AAAATAATAGGCAAATTCCTGGATCACCCGGTAAGAATGTGGAGAAGAACCAAAACAGAATGGTTCCACCTACTAAAAAC TAAGCGGGGATGCCGCCTACTACTAAAATCCCGGTTTTTGCAACAACAGTTGCGTTATTCTATGCAAGAAGAAGACTTTG AAAGAACAAAGAAGTTTGGATCCGAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGAAGAGGAATTTG TATCATTTCAAATCCCTATTCTTATCGAAGAGAAGAAACGAGAAAAACCGATATCTTCCTACTCGAACAAGAAGTCCTAT AGTTTACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCTCATCCCCCCATCAGTTTACTATGAAGAGAAGAATCA AAAGGATCGAACTACCTACCCATTATTCGGAGGTGAATCATAGAACACCAAAAGCGGTGGTATTTTATGGACCTAACATA GGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAAACATATA A
Protein sequence (LotjaGi5g1v0122400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRFKTCRLLSGNVRNRELTIIQRRILRRLRKKKRSIKRKIYPRENLNSYIQSQTTRKLPLFHGDLPITEMHRGTERTSYI PFLLNPETRSDVIPVRLHFRETIPQARQPISHRRVCVNNRMVSITRLKVSHGDLISFQENDARIRGEEIRRSFYIEISVE KIIGKFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKSRFLQQQLRYSMQEEDFERTKKFGSEKVCLGSSFAEHNRMKRNL YHFKSLFLSKRRNEKNRYLPTRTRSPIVYNSSLYSNSTYCSSSPHQFTMKRRIKRIELPTHYSEVNHRTPKAVVFYGPNI GHIPHDIRLKDPNLPLRSGNGRGQNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 265 | 264 | 1.3E-136 | – | |
| PANTHER | 2 | 265 | 264 | 1.3E-136 | ||
| SUPERFAMILY | 27 | 178 | 152 | 2.36E-23 | – | |
| ProSiteProfiles | 88 | 159 | 72 | 8.973 | ||
| SMART | 88 | 149 | 62 | 2.7E-5 | ||
| CDD | 89 | 140 | 52 | 6.57376E-10 | ||
| Gene3D | 89 | 170 | 82 | 4.7E-12 | ||
| Pfam | 91 | 135 | 45 | 2.7E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi5g1v0122400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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