Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PS50889

Source: ProSiteProfiles

Description

S4 RNA-binding domain profile.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Associated Lotus transcripts 40

Transcript Name Description Predicted domains Domain count
Lj0g3v0054209.1
– Ribosomal protein S4 [Lotus japonicus] gi|13518426|ref|NP_084786.1|
Domains
24
Lj0g3v0080839.1
– PREDICTED: 40S ribosomal protein S9-2-like [Glycine max] gi|356562820|ref|XP_003549666.1|
Domains
15
Lj0g3v0134749.1
– RNA-binding S4 domain-containing protein [Theobroma cacao] gi|508721123|gb|EOY13020.1|
Domains
11
Lj0g3v0134749.2
– RNA-binding S4 domain-containing protein [Theobroma cacao] gi|508721123|gb|EOY13020.1|
Domains
11
Lj0g3v0134749.3
– RNA-binding S4 domain-containing protein [Theobroma cacao] gi|508721123|gb|EOY13020.1|
Domains
9
Lj0g3v0199449.1
– PREDICTED: ribosomal protein S4, mitochondrial-like [Cicer arietinum] gi|502087980|ref|XP_004488697.1|
Domains
10
Lj0g3v0203509.1
– PREDICTED: tyrosine--tRNA ligase-like [Cicer arietinum] gi|502129554|ref|XP_004500343.1|
Domains
24
Lj0g3v0293459.1
– 40S ribosomal protein S4 [Medicago truncatula] gi|357468567|ref|XP_003604568.1|
Domains
22
Lj1g3v2251580.1
– PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer arietinum] gi|502131232|ref|XP_004500918.1|
Domains
16
Lj3g3v0461420.1
– PREDICTED: tyrosine--tRNA ligase-like [Cicer arietinum] gi|502129554|ref|XP_004500343.1|
Domains
19
Lj3g3v0461620.1
– PREDICTED: tyrosine--tRNA ligase-like [Cicer arietinum] gi|502129554|ref|XP_004500343.1|
Domains
24
Lj3g3v3237860.1
– PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3-like [Glycine max] gi|356535851|ref|XP_003536456.1|
Domains
10
Lj4g3v1330370.1
– Ribosomal protein S4 [Lotus japonicus] gi|13518426|ref|NP_084786.1|
Domains
9
Lj4g3v1635200.1
– PREDICTED: 40S ribosomal protein S9-2-like [Cicer arietinum] gi|502152082|ref|XP_004508755.1|
Domains
18
Lj5g3v1795760.1
– Pseudouridine synthase family protein isoform 2, partial [Theobroma cacao] gi|508726877|gb|EOY18774.1|
Domains
22
Lj5g3v1795760.2
– Pseudouridine synthase family protein isoform 3 [Theobroma cacao] gi|508726878|gb|EOY18775.1|
Domains
22
LotjaGi1g1v0218000.1
– 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|I3T2G7|I3T2G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0218000
Domains
19
LotjaGi1g1v0431800.1
– Pseudouridine synthase; TAIR: AT1G76050.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3ECD0|PUS2_ARATH RNA pseudouridine synthase 2, chloroplastic; TrEMBL-Plants: tr|V7ARA7|V7ARA7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0431800
Domains
19
LotjaGi1g1v0431800.2
– Pseudouridine synthase; TAIR: AT1G76050.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3ECD0|PUS2_ARATH RNA pseudouridine synthase 2, chloroplastic; TrEMBL-Plants: tr|V7ARA7|V7ARA7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0431800
Domains
19
LotjaGi1g1v0445300.1
– 40S ribosomal protein S4; TAIR: AT5G07090.1 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|P49204|RS42_ARATH 40S ribosomal protein S4-2; TrEMBL-Plants: tr|G7JLT2|G7JLT2_MEDTR 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0445300
Domains
28
LotjaGi1g1v0445300.2
– 40S ribosomal protein S4; TAIR: AT5G07090.2 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3; TrEMBL-Plants: tr|G7JLT2|G7JLT2_MEDTR 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0445300
Domains
26
LotjaGi1g1v0445300.3
– 40S ribosomal protein S4; TAIR: AT5G58420.1 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3; TrEMBL-Plants: tr|G7JLT2|G7JLT2_MEDTR 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0445300
Domains
25
LotjaGi3g1v0053200.1
– Tyrosine--tRNA ligase; TAIR: AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q9M876|SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072UXA5|A0A072UXA5_MEDTR Tyrosine--tRNA ligase; Found in the gene: LotjaGi3g1v0053200
Domains
24
LotjaGi3g1v0076100.1
– Ribosomal RNA large subunit methyltransferase J; TAIR: AT3G25470.1 bacterial hemolysin-like protein; Swiss-Prot: sp|P19672|YQXC_BACSU Putative rRNA methyltransferase YqxC; TrEMBL-Plants: tr|K7KE27|K7KE27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0076100
Domains
18
LotjaGi3g1v0153300.1
– RNA-binding S4 domain protein; TAIR: AT1G53120.1 RNA-binding S4 domain-containing protein; Swiss-Prot: sp|P71020|YLMH_BACSU Putative RNA-binding protein YlmH; TrEMBL-Plants: tr|C6TI80|C6TI80_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0153300
Domains
21
LotjaGi3g1v0492600.1
– 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0492600
Domains
14
LotjaGi3g1v0492600.2
– 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q921Y2|IMP3_MOUSE U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0492600
Domains
11
LotjaGi4g1v0130400.1
– 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0130400
Domains
14
LotjaGi4g1v0130400.2
– 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q921Y2|IMP3_MOUSE U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0130400
Domains
11
LotjaGi4g1v0130400.3
– 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0130400
Domains
14
LotjaGi4g1v0249100.1
– 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|V7CDF1|V7CDF1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0249100
Domains
19
LotjaGi4g1v0249100.2
– 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|V7CDF1|V7CDF1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0249100
Domains
19
LotjaGi5g1v0122400.1
– Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|A0A072TH07|A0A072TH07_MEDTR Ribosomal protein S4; Found in the gene: LotjaGi5g1v0122400
Domains
11
LotjaGi5g1v0122400.3
– Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|A0A072TH07|A0A072TH07_MEDTR Ribosomal protein S4; Found in the gene: LotjaGi5g1v0122400
Domains
11
LotjaGi5g1v0122400.4
– Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|A0A072TH07|A0A072TH07_MEDTR Ribosomal protein S4; Found in the gene: LotjaGi5g1v0122400
Domains
11
LotjaGi5g1v0223500_LC.1
– Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|R4IUJ8|R4IUJ8_VICFA Ribosomal protein S4; Found in the gene: LotjaGi5g1v0223500_LC
Domains
11
LotjaGi5g1v0223500_LC.2
– Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|R4IUJ8|R4IUJ8_VICFA Ribosomal protein S4; Found in the gene: LotjaGi5g1v0223500_LC
Domains
11
LotjaGi5g1v0270600.1
– Ribosomal large subunit pseudouridine synthase B; TAIR: AT2G39140.1 pseudouridine synthase family protein; Swiss-Prot: sp|P35159|RLUB_BACSU Ribosomal large subunit pseudouridine synthase B; TrEMBL-Plants: tr|A0A151SE04|A0A151SE04_CAJCA Ribosomal large subunit pseudouridine synthase B; Found in the gene: LotjaGi5g1v0270600
Domains
25
LotjaGi6g1v0104800.1
– Tyrosine--tRNA ligase; TAIR: AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q9M876|SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072UXA5|A0A072UXA5_MEDTR Tyrosine--tRNA ligase; Found in the gene: LotjaGi6g1v0104800
Domains
24
LotjaGi6g1v0104800.2
– Tyrosine--tRNA ligase; TAIR: AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q9M876|SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072V2K0|A0A072V2K0_MEDTR Tyrosine--tRNA ligase; Found in the gene: LotjaGi6g1v0104800
Domains
23

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd00805 CDD 1 2.50