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IPR002942

Source: InterPro

Description

IPR002942 is a RNA-binding S4 domain.

<p>The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial small ribosomal subunit protein uS4, eukaryotic ribosomal uS4 (also known as S9), two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation [[cite:PUB00003444]]. The S4 domain probably mediates binding to RNA [[cite:PUB00001317]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Associated Lotus transcripts 46

Transcript Name Description Predicted domains Domain count
Lj0g3v0054209.1
– Ribosomal protein S4 [Lotus japonicus] gi|13518426|ref|NP_084786.1|
Domains
24
Lj0g3v0080839.1
– PREDICTED: 40S ribosomal protein S9-2-like [Glycine max] gi|356562820|ref|XP_003549666.1|
Domains
15
Lj0g3v0134749.1
– RNA-binding S4 domain-containing protein [Theobroma cacao] gi|508721123|gb|EOY13020.1|
Domains
11
Lj0g3v0134749.2
– RNA-binding S4 domain-containing protein [Theobroma cacao] gi|508721123|gb|EOY13020.1|
Domains
11
Lj0g3v0134749.3
– RNA-binding S4 domain-containing protein [Theobroma cacao] gi|508721123|gb|EOY13020.1|
Domains
9
Lj0g3v0199449.1
– PREDICTED: ribosomal protein S4, mitochondrial-like [Cicer arietinum] gi|502087980|ref|XP_004488697.1|
Domains
10
Lj0g3v0203509.1
– PREDICTED: tyrosine--tRNA ligase-like [Cicer arietinum] gi|502129554|ref|XP_004500343.1|
Domains
24
Lj0g3v0293459.1
– 40S ribosomal protein S4 [Medicago truncatula] gi|357468567|ref|XP_003604568.1|
Domains
22
Lj1g3v2251580.1
– PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer arietinum] gi|502131232|ref|XP_004500918.1|
Domains
16
Lj2g3v2806670.1
– PREDICTED: 40S ribosomal protein S4-1-like [Glycine max] gi|356559288|ref|XP_003547932.1|
Domains
21
Lj3g3v0461420.1
– PREDICTED: tyrosine--tRNA ligase-like [Cicer arietinum] gi|502129554|ref|XP_004500343.1|
Domains
19
Lj3g3v0461620.1
– PREDICTED: tyrosine--tRNA ligase-like [Cicer arietinum] gi|502129554|ref|XP_004500343.1|
Domains
24
Lj3g3v3237860.1
– PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3-like [Glycine max] gi|356535851|ref|XP_003536456.1|
Domains
10
Lj4g3v1330370.1
– Ribosomal protein S4 [Lotus japonicus] gi|13518426|ref|NP_084786.1|
Domains
9
Lj4g3v1635200.1
– PREDICTED: 40S ribosomal protein S9-2-like [Cicer arietinum] gi|502152082|ref|XP_004508755.1|
Domains
18
Lj5g3v1795760.1
– Pseudouridine synthase family protein isoform 2, partial [Theobroma cacao] gi|508726877|gb|EOY18774.1|
Domains
22
Lj5g3v1795760.2
– Pseudouridine synthase family protein isoform 3 [Theobroma cacao] gi|508726878|gb|EOY18775.1|
Domains
22
LotjaGi1g1v0074400.1
– 40S ribosomal protein S4; TAIR: AT2G17360.1 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1; TrEMBL-Plants: tr|A0A0S3R4D4|A0A0S3R4D4_PHAAN 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0074400
Domains
27
LotjaGi1g1v0074400.2
– 40S ribosomal protein S4; TAIR: AT5G07090.2 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1; TrEMBL-Plants: tr|A0A0R4J5K4|A0A0R4J5K4_SOYBN 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0074400
Domains
24
LotjaGi1g1v0074400.3
– 40S ribosomal protein S4; TAIR: AT2G17360.1 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1; TrEMBL-Plants: tr|A0A0L9UWB5|A0A0L9UWB5_PHAAN 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0074400
Domains
25
LotjaGi1g1v0218000.1
– 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|I3T2G7|I3T2G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0218000
Domains
19
LotjaGi1g1v0431800.1
– Pseudouridine synthase; TAIR: AT1G76050.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3ECD0|PUS2_ARATH RNA pseudouridine synthase 2, chloroplastic; TrEMBL-Plants: tr|V7ARA7|V7ARA7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0431800
Domains
19
LotjaGi1g1v0431800.2
– Pseudouridine synthase; TAIR: AT1G76050.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3ECD0|PUS2_ARATH RNA pseudouridine synthase 2, chloroplastic; TrEMBL-Plants: tr|V7ARA7|V7ARA7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0431800
Domains
19
LotjaGi1g1v0445300.1
– 40S ribosomal protein S4; TAIR: AT5G07090.1 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|P49204|RS42_ARATH 40S ribosomal protein S4-2; TrEMBL-Plants: tr|G7JLT2|G7JLT2_MEDTR 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0445300
Domains
28
LotjaGi1g1v0445300.2
– 40S ribosomal protein S4; TAIR: AT5G07090.2 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3; TrEMBL-Plants: tr|G7JLT2|G7JLT2_MEDTR 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0445300
Domains
26
LotjaGi1g1v0445300.3
– 40S ribosomal protein S4; TAIR: AT5G58420.1 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3; TrEMBL-Plants: tr|G7JLT2|G7JLT2_MEDTR 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0445300
Domains
25
LotjaGi3g1v0053200.1
– Tyrosine--tRNA ligase; TAIR: AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q9M876|SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072UXA5|A0A072UXA5_MEDTR Tyrosine--tRNA ligase; Found in the gene: LotjaGi3g1v0053200
Domains
24
LotjaGi3g1v0076100.1
– Ribosomal RNA large subunit methyltransferase J; TAIR: AT3G25470.1 bacterial hemolysin-like protein; Swiss-Prot: sp|P19672|YQXC_BACSU Putative rRNA methyltransferase YqxC; TrEMBL-Plants: tr|K7KE27|K7KE27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0076100
Domains
18
LotjaGi3g1v0153300.1
– RNA-binding S4 domain protein; TAIR: AT1G53120.1 RNA-binding S4 domain-containing protein; Swiss-Prot: sp|P71020|YLMH_BACSU Putative RNA-binding protein YlmH; TrEMBL-Plants: tr|C6TI80|C6TI80_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0153300
Domains
21
LotjaGi3g1v0492600.1
– 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0492600
Domains
14
LotjaGi3g1v0492600.2
– 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q921Y2|IMP3_MOUSE U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0492600
Domains
11
LotjaGi4g1v0130400.1
– 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0130400
Domains
14
LotjaGi4g1v0130400.2
– 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q921Y2|IMP3_MOUSE U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0130400
Domains
11
LotjaGi4g1v0130400.3
– 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0130400
Domains
14
LotjaGi4g1v0249100.1
– 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|V7CDF1|V7CDF1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0249100
Domains
19
LotjaGi4g1v0249100.2
– 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|V7CDF1|V7CDF1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0249100
Domains
19
LotjaGi4g1v0249100.3
– 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|A0A0B2SUR7|A0A0B2SUR7_GLYSO 40S ribosomal protein S9-2; Found in the gene: LotjaGi4g1v0249100
Domains
16
LotjaGi5g1v0122400.1
– Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|A0A072TH07|A0A072TH07_MEDTR Ribosomal protein S4; Found in the gene: LotjaGi5g1v0122400
Domains
11
LotjaGi5g1v0122400.3
– Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|A0A072TH07|A0A072TH07_MEDTR Ribosomal protein S4; Found in the gene: LotjaGi5g1v0122400
Domains
11
LotjaGi5g1v0122400.4
– Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|A0A072TH07|A0A072TH07_MEDTR Ribosomal protein S4; Found in the gene: LotjaGi5g1v0122400
Domains
11
LotjaGi5g1v0223500_LC.1
– Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|R4IUJ8|R4IUJ8_VICFA Ribosomal protein S4; Found in the gene: LotjaGi5g1v0223500_LC
Domains
11
LotjaGi5g1v0223500_LC.2
– Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|R4IUJ8|R4IUJ8_VICFA Ribosomal protein S4; Found in the gene: LotjaGi5g1v0223500_LC
Domains
11
LotjaGi5g1v0270600.1
– Ribosomal large subunit pseudouridine synthase B; TAIR: AT2G39140.1 pseudouridine synthase family protein; Swiss-Prot: sp|P35159|RLUB_BACSU Ribosomal large subunit pseudouridine synthase B; TrEMBL-Plants: tr|A0A151SE04|A0A151SE04_CAJCA Ribosomal large subunit pseudouridine synthase B; Found in the gene: LotjaGi5g1v0270600
Domains
25
LotjaGi5g1v0276400.1
– Pseudouridine synthase; TAIR: AT3G52260.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5M721|PUS5_ARATH RNA pseudouridine synthase 5; TrEMBL-Plants: tr|I1NHE4|I1NHE4_SOYBN Pseudouridine synthase; Found in the gene: LotjaGi5g1v0276400
Domains
12
LotjaGi6g1v0104800.1
– Tyrosine--tRNA ligase; TAIR: AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q9M876|SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072UXA5|A0A072UXA5_MEDTR Tyrosine--tRNA ligase; Found in the gene: LotjaGi6g1v0104800
Domains
24
LotjaGi6g1v0104800.2
– Tyrosine--tRNA ligase; TAIR: AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q9M876|SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072V2K0|A0A072V2K0_MEDTR Tyrosine--tRNA ligase; Found in the gene: LotjaGi6g1v0104800
Domains
23

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd00805 CDD 1 2.17