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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR022801
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 21 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.766s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0054209.1
n.a. ribosomal protein S4 [Lotus japonicus] gi|13518426|ref|NP_084786.1| chr0 17355034 17355806 -
2 domain predictions
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Lj0g3v0080839.1
n.a. PREDICTED: 40S ribosomal protein S9-2-like [Glycine max] gi|356562820|ref|XP_003549666.1| chr0 31399310 31401049 -
2 domain predictions
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Lj0g3v0199449.1
n.a. PREDICTED: ribosomal protein S4, mitochondrial-like [Cicer arietinum] gi|502087980|ref|XP_004488697.1| chr0 97789792 97792679 -
2 domain predictions
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Lj0g3v0292979.1
n.a. PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3-like [Glycine max] gi|356535851|ref|XP_003536456.1| chr0 152070691 152072751 +
2 domain predictions
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Lj3g3v3237860.1
n.a. PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3-like [Glycine max] gi|356535851|ref|XP_003536456.1| chr3 39908933 39912564 -
2 domain predictions
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Lj4g3v1330370.1
n.a. ribosomal protein S4 [Lotus japonicus] gi|13518426|ref|NP_084786.1| chr4 20292633 20293106 -
2 domain predictions
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Lj4g3v1635200.1
n.a. PREDICTED: 40S ribosomal protein S9-2-like [Cicer arietinum] gi|502152082|ref|XP_004508755.1| chr4 23997792 23999574 +
2 domain predictions
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LotjaGi1g1v0218000.1
n.a. 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|I3T2G7|I3T2G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0218000 LjG1.1_chr1 48242287 48244998 -
2 domain predictions
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LotjaGi3g1v0492600.1
n.a. 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0492600 LjG1.1_chr3 91083876 91087173 -
2 domain predictions
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LotjaGi3g1v0492600.2
n.a. 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q921Y2|IMP3_MOUSE U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0492600 LjG1.1_chr3 91084240 91086887 -
2 domain predictions
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LotjaGi4g1v0130400.1
n.a. 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0130400 LjG1.1_chr4 19089941 19094961 -
2 domain predictions
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LotjaGi4g1v0130400.2
n.a. 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q921Y2|IMP3_MOUSE U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0130400 LjG1.1_chr4 19090332 19092728 -
2 domain predictions
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LotjaGi4g1v0130400.3
n.a. 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0130400 LjG1.1_chr4 19090332 19092821 -
2 domain predictions
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LotjaGi4g1v0249100.1
n.a. 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|V7CDF1|V7CDF1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0249100 LjG1.1_chr4 60192487 60206796 +
2 domain predictions
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LotjaGi4g1v0249100.2
n.a. 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|V7CDF1|V7CDF1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0249100 LjG1.1_chr4 60204615 60206181 +
2 domain predictions
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LotjaGi4g1v0249100.3
n.a. 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|A0A0B2SUR7|A0A0B2SUR7_GLYSO 40S ribosomal protein S9-2; Found in the gene: LotjaGi4g1v0249100 LjG1.1_chr4 60204698 60205278 +
2 domain predictions
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LotjaGi5g1v0122400.1
n.a. Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|A0A072TH07|A0A072TH07_MEDTR Ribosomal protein S4; Found in the gene: LotjaGi5g1v0122400 LjG1.1_chr5 25855231 25878464 -
2 domain predictions
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LotjaGi5g1v0122400.3
n.a. Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|A0A072TH07|A0A072TH07_MEDTR Ribosomal protein S4; Found in the gene: LotjaGi5g1v0122400 LjG1.1_chr5 25876711 25877800 -
2 domain predictions
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LotjaGi5g1v0122400.4
n.a. Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|A0A072TH07|A0A072TH07_MEDTR Ribosomal protein S4; Found in the gene: LotjaGi5g1v0122400 LjG1.1_chr5 25876711 25877998 -
2 domain predictions
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LotjaGi5g1v0223500_LC.1
n.a. Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|R4IUJ8|R4IUJ8_VICFA Ribosomal protein S4; Found in the gene: LotjaGi5g1v0223500_LC LjG1.1_chr5 53018178 53019231 -
2 domain predictions
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LotjaGi5g1v0223500_LC.2
n.a. Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|R4IUJ8|R4IUJ8_VICFA Ribosomal protein S4; Found in the gene: LotjaGi5g1v0223500_LC LjG1.1_chr5 53018178 53019485 -
2 domain predictions
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