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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0122400 |
| Transcript ID | LotjaGi5g1v0122400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein S4; TAIR: AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|Q31708|RT04_ARATH Ribosomal protein S4, mitochondrial; TrEMBL-Plants: tr|A0A072TH07|A0A072TH07_MEDTR Ribosomal protein S4; Found in the gene: LotjaGi5g1v0122400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:25876711..25877998) extracted from Lotus japonicus Gifu genome v1.2.
TTGGATCGAGAGTTCAATAACTACCCCCTAGCCCTAGGGAAGCAGCCTCTCTTTGTCCTCCAAGACATCTCTCATGCCGT GCCAAGGCAGCGAAACCTTTCGCCCGGCGAAAGCGGTAATCTCTTTCCCGTTCCCGGCTTTTTAAGCTGTTAAACCAGCT TAGGAAAGATGAGAACTCGCAGCAGAGGGGGTTCGATTCCCTTTATACGCGATGTGGTGAATCAGACTGATTCAACGACG ACGAGATATGCGATTTAAAACTTGTCGTCTACTTTCAGGAAATGTTCGGAACAGAGAACTTACAATAATACAACGCCGCA TTCTCCGAAGATTGAGGAAGAAGAAGAGATCTATTAAGAGAAAGATTTATCCGAGAGAAAATCTTAACAGTTACATCCAA TCACAAACTACACGAAAGTTGCCCCTTTTTCATGGGGATTTACCCATCACAGAGATGCACAGAGGAACAGAACGAACTTC ATATATCCCTTTTCTACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTCGTGAAACTATTCCTC AAGCAAGGCAGCCGATAAGTCATCGAAGGGTTTGTGTGAATAATCGAATGGTAAGCATTACTCGTTTGAAAGTTTCCCAC GGTGATCTAATCTCTTTTCAAGAAAATGACGCGAGAATCCGCGGTGAAGAAATAAGGAGATCTTTCTATATCGAAATATC AGTTGAAAAAATAATAGGCAAATTCCTGGATCACCCGGTAAGAATGTGGAGAAGAACCAAAACAGAATGGTTCCACCTAC TAAAAACTAAGCGGGGATGCCGCCTACTACTAAAATCCCGGTTTTTGCAACAACAGTTGCGTTATTCTATGCAAGAAGAA GACTTTGAAAGAACAAAGAAGTTTGGATCCGAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGAAGAG GAATTTGTATCATTTCAAATCCCTATTCTTATCGAAGAGAAGAAACGAGAAAAACCGATATCTTCCTACTCGAACAAGAA GTCCTATAGTTTACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCTCATCCCCCCATCAGTTTACTATGAAGAGA AGAATCAAAAGGATCGAACTACCTACCCATTATTCGGAGGTGAATCATAGAACACCAAAAGCGGTGGTATTTTATGGACC TAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAA ACATATAA
CDS sequence (LotjaGi5g1v0122400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACAGAGGAACAGAACGAACTTCATATATCCCTTTTCTACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTCG TCTCCATTTTCGTGAAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATCGAAGGGTTTGTGTGAATAATCGAATGGTAA GCATTACTCGTTTGAAAGTTTCCCACGGTGATCTAATCTCTTTTCAAGAAAATGACGCGAGAATCCGCGGTGAAGAAATA AGGAGATCTTTCTATATCGAAATATCAGTTGAAAAAATAATAGGCAAATTCCTGGATCACCCGGTAAGAATGTGGAGAAG AACCAAAACAGAATGGTTCCACCTACTAAAAACTAAGCGGGGATGCCGCCTACTACTAAAATCCCGGTTTTTGCAACAAC AGTTGCGTTATTCTATGCAAGAAGAAGACTTTGAAAGAACAAAGAAGTTTGGATCCGAAAAAGTATGCTTAGGCAGTTCC TTCGCTGAGCACAACAGAATGAAGAGGAATTTGTATCATTTCAAATCCCTATTCTTATCGAAGAGAAGAAACGAGAAAAA CCGATATCTTCCTACTCGAACAAGAAGTCCTATAGTTTACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCTCAT CCCCCCATCAGTTTACTATGAAGAGAAGAATCAAAAGGATCGAACTACCTACCCATTATTCGGAGGTGAATCATAGAACA CCAAAAGCGGTGGTATTTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCT TCGGAGCGGAAACGGACGTGGCCAAAACATATAA
Protein sequence (LotjaGi5g1v0122400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHRGTERTSYIPFLLNPETRSDVIPVRLHFRETIPQARQPISHRRVCVNNRMVSITRLKVSHGDLISFQENDARIRGEEI RRSFYIEISVEKIIGKFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKSRFLQQQLRYSMQEEDFERTKKFGSEKVCLGSS FAEHNRMKRNLYHFKSLFLSKRRNEKNRYLPTRTRSPIVYNSSLYSNSTYCSSSPHQFTMKRRIKRIELPTHYSEVNHRT PKAVVFYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 198 | 196 | 2.2E-93 | – | |
| PANTHER | 3 | 198 | 196 | 2.2E-93 | ||
| SUPERFAMILY | 8 | 109 | 102 | 2.36E-20 | – | |
| ProSiteProfiles | 19 | 90 | 72 | 8.973 | ||
| SMART | 19 | 80 | 62 | 2.7E-5 | ||
| CDD | 20 | 71 | 52 | 6.49441E-10 | ||
| Gene3D | 20 | 101 | 82 | 3.1E-12 | ||
| Pfam | 22 | 66 | 45 | 2.0E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi5g1v0122400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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