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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0135400 |
| Transcript ID | LotjaGi5g1v0135400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit E; TAIR: AT3G57290.1 eukaryotic translation initiation factor 3E; Swiss-Prot: sp|Q9C5Z3|EIF3E_ARATH Eukaryotic translation initiation factor 3 subunit E; TrEMBL-Plants: tr|V7BI41|V7BI41_PHAVU Eukaryotic translation initiation factor 3 subunit E; Found in the gene: LotjaGi5g1v0135400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:32092547..32096523) extracted from Lotus japonicus Gifu genome v1.2.
AAAATATATTGATGTGTGCGTATAAAAAAAAACTAGGAGGTGTAGTTGGGCCTTTGCAAGGAGCGGTAAATAACAGGGCT GTGAAGCCCTCTCCCCCCATCGAAATAAAAAGGAGTAGTAAATAACTAAATATTTTTGCTATATGGGTAAATAAGTAAAT ATTAATATTGATATATTGATATGTTTTTTGATAGTTTAAGAATCTCTTGGATAAAAAAAGGCTAACGGGTTTGTTCTACT TCTAAACCCTAATTTTGCGTTGCTCTCTCTGCATCTGGTCACTGAGTCGCTTCTCTCCTCCGCCGTCAATCATTCATTCT CTCACCGGAACATGGCGGAATACGATCTGACACCGCGGATGGCGCCGAATCTGGACCGGCACTTGGTGTTCCCACTGTTG GAGTTCCTTCAAGAGAGACAGCTTTACAACGACGACCACATCCTCAAGGCGAAGATCGAGCTTCTCAACAACACCAACAT GGTCGACTACGCCATGGACATCCACAAGAGCCTCTACCACACTGAAGACGTGCCTCAAGATATGGTTGAACGCCGTGTCG ATGTCGTCTCCCGCCTGAAGTCGCTCGAGGAGGCCGCCGCCCCCCTCGTCGCGTTCCTCCAGAACGCTGCCGCTGTTCAG GAACTTAGGGCTGACAAACAGTATAATCTTCAGATGCTCAATGAACGATACCAGGTTTCTTCATCATCTTGTTTTTTTTG TAAATAATGATAAAATTCATTTTATGTCTTTGATTGTTTGTTTGTTTAAATTTGATAATTTTCTGAAAAATAAACGGATT ATTTGTGAGAAATAATGGGTTCCCAAGAATACCAGATAGTTTTTATTAACCCTAGAGTATTGTTGTTATGTATCTCTCTC TCTAGAGTATTGTTCAGTACTCAAATTTTTAGGCATTGTGGTTTGGATTTATCAATTTATTTTTGAAATTGTTTTTTTGG TAATCCTATTTTTTTCATTGGCAAGACTTCCTTCAGATTGGACTTTGTTCCTTGCCACTTGTAGTAACTAACTTGGTTCA TAGTTTTGAATTTTAGGGTGTTTGAAGCACGCAGGCACGGATTAGAATTTCAAAATCGTATGTTGATGCCAAACTTTCAG TGTTTGGATATGTATTTTTTTTTATTTTTAAAGTTTTGTTTACTTGTTTTTTGCTGCATCATGAGTGGTTATGGGTGTTT TATAGAAGTTTTTGGTGAAATTGACCTGGTGTGATACAAGTTTCAAAGGGGTATTGAATTATATAAGCATTCTTCTACCG TTCAATCTCACATTTTTTATTTTATTTTATGATTTAGGTTTCAATCTAACTATTTTATTAAATGGGACTGCTACTGAGGA TGTAAAGCTATGGACTTGGACCTTGTGATGTGCTTAACTGTCCTTTGTAAATAACCCCCCCTTTTAACTCAACAGTATCT TAGATGCTTAATTAATGTCCTTGCACTGTTTGATTTGTTTCGACAATTTGTTCTTTTCAGGCGCATTTCTTGTTTGCTGT TTTTGCTGGAATTTGGTTGTGTTTAATTTCTGACTCCTTTAATGATGGTTCTGTTGTAACAGATCGGTCCTGCACAGATA GAGGCATTGTACCAATATGCCAAATTTCAGTTTGAGTGTGGAAATTACTCTGGTGCTGCTGACTATCTTTATCAGTACAG AGCTTTGTGCACTAATAGTGAAAGGAGTCTAAGTGCATTGTGGGGAAAGCTGGCAGCTGAAATACTGATGCAGAACTGGG ACATTGCTCTTGAAGAGCTCAATCGGTTGAAGGAAATCATTGACTCTAAGGTTGTGGGTCAGTTGGTCTTTTGAGTAGCT TCTCATGCTGGTTTGTAATGTTCATATTAAGATATACTTACTAGTGGTGATCTTTGTTGCAGAATTTCGCATCACCTTTG AATCAGGTGCAGAGCAGAATATGGTTGATGCATTGGAGTCTGTTCATCTTTTTCAACCATGACAATGGAAGAACACAGAT TATTGATCTGTTTAATCAGGACAAGTATGCGTTATTGATTGCTCTGGTTTGTGGGATATTTTCTATGTTTTTATATTTGC TGTTAATGTGCCTAAAAGCGATCTGCTTCCTCTCTCTGGGTTCACTTCCTTTCTTTATCTTCTGGGCTTAGTATTTGTGA TGATGCTTTCTAATATATGATATCATTTTCAGGTATCTTAATGCCATCCAAACTAGTGCTCCACACCTTTTACGATACTT GGCCACAGCATTTATTGTCAACAAGCGCAGGAGGCCTCAATTCAAAGATTTCATTAAAGTTATTCAACAAGAGCAACATT CTTATAAGGATCCCATTACTGAGTTTTTGGCTTGTGTTTATGTCAACTATGACTTTGATGGGGCACAAAAGAAGATGAGG GAGTGTGAAGAAGTAAGTGGTCTTAAAATAATTTTGTCCAAGATAGTTACTACATATAGCTCTTTGTGTTGATTATAATA TGCTCTCCATTCGTAAAAATGCAGGTGATTCTCAATGATCCCTTCCTTGGTAAACGGGTTGAAGAGAGCAACTTCTCGAC TGTACCATTAAGGGATGAGTTCCTTGAAAATGCTAGGCTATTTATTTTTGAGACATACTGTAGAATACACCAACGCATTG ACATGGGGTATGCATCAGTTTCTGATATAAGATGTTGTAGCCTCCCTTAGGTTTTGGAATATGCCGCAATCTTCATAGCT CCATCCCCGTATTATTTAAAACTTTTGTGATGTGCCATAATTTCGTACCTTATGAAAAGCACACTTTATGCCATTGATCT TTGACTGTATCAAAATCAAAGGCACAAAATTTAAGTTGTGCCATAAATGTTTCAGCCATAGCTCCTCTCTTCCTCATTTT TATGTCGGAAGTTTTATTTTGTGTGAAGTTTTATTTTTCTTTTGATGATTACTTCCCCTGCTCTACTTTTCATACATCAC AACTGCATAGTATATTTAATGTAGTAACGCAAACTTCTAAGATTAGGTTGCCTAATTGCTTATACTTTTGACAGAGTTCT TGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGATTGTGAATCTGATCCGTAACTCAAAGCTTGATGCCA AAATTGACTCTCAAACTGGAACTGTTATCATGGAACCCACCCATCCAAACGTGTAAGTAGACATTGGTGACTGATTTGAT AGTGAAGGGTGGCCTTCATTGCTTTCTATTGATTGGACTAGTGTCTCCCCTTCTTTTTACCATGTCCTTTATTATCCTAC AACTTTAAGACCCTTAATCTTCAAAATGGTACATCTCCAGGTATGAGCAGCTGATAGACCATACCAAGGCCCTTAACGGG CGCACTTACAAGTTGGTCAGTCAACTTTTGGAACATGCACAAGGACAAGCTGCCCGGTAACTGACTTTCTAGGAAGACTG AGGAGAGCTTTTGTTTTTCTTTTCCCCTGCGTTGATATTTGTTTATTTAAAAATTACATTGCAAAATTATGTTAGATCTC TTATTTTTAGTGTTGATGCAGACATGTAATATTGTTAAATTACCATTTTGCTTAATGTCTGCCATAAATTTCTTCACTGC TGAAACATGGATACATTTGCCATTTGGCATCAATTTGGTAACTCTTATTTCTTTTGTTTTTGCCAATTTTTGTCAACCTG TTTTTCTCTTTCTTAACTACTGTAAGAGCATCTCCAATGGAGGGTTGCCAGTTGAGTTGCTTAAATGCTATTCTGGTGGG TCCATGCTGCCACATAGGATTTAAACAACTCATAAACAACCCAGACAGAATGCACTCCAGTGCATGATTACTTATTTTAC TTTTAGTTAGGGCCTACTATACTCTATATATTTATATTTTTTAATTCCACATTAAAATTTAAATATTAATTCAATGTAAT TAATTAATTAATCTTCTTATTAACTAATTTACTAATTAAATACTATTTTTTTCTTTT
CDS sequence (LotjaGi5g1v0135400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAATACGATCTGACACCGCGGATGGCGCCGAATCTGGACCGGCACTTGGTGTTCCCACTGTTGGAGTTCCTTCA AGAGAGACAGCTTTACAACGACGACCACATCCTCAAGGCGAAGATCGAGCTTCTCAACAACACCAACATGGTCGACTACG CCATGGACATCCACAAGAGCCTCTACCACACTGAAGACGTGCCTCAAGATATGGTTGAACGCCGTGTCGATGTCGTCTCC CGCCTGAAGTCGCTCGAGGAGGCCGCCGCCCCCCTCGTCGCGTTCCTCCAGAACGCTGCCGCTGTTCAGGAACTTAGGGC TGACAAACAGTATAATCTTCAGATGCTCAATGAACGATACCAGATCGGTCCTGCACAGATAGAGGCATTGTACCAATATG CCAAATTTCAGTTTGAGTGTGGAAATTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAGCTTTGTGCACTAATAGT GAAAGGAGTCTAAGTGCATTGTGGGGAAAGCTGGCAGCTGAAATACTGATGCAGAACTGGGACATTGCTCTTGAAGAGCT CAATCGGTTGAAGGAAATCATTGACTCTAAGAATTTCGCATCACCTTTGAATCAGGTGCAGAGCAGAATATGGTTGATGC ATTGGAGTCTGTTCATCTTTTTCAACCATGACAATGGAAGAACACAGATTATTGATCTGTTTAATCAGGACAAGTATCTT AATGCCATCCAAACTAGTGCTCCACACCTTTTACGATACTTGGCCACAGCATTTATTGTCAACAAGCGCAGGAGGCCTCA ATTCAAAGATTTCATTAAAGTTATTCAACAAGAGCAACATTCTTATAAGGATCCCATTACTGAGTTTTTGGCTTGTGTTT ATGTCAACTATGACTTTGATGGGGCACAAAAGAAGATGAGGGAGTGTGAAGAAGTGATTCTCAATGATCCCTTCCTTGGT AAACGGGTTGAAGAGAGCAACTTCTCGACTGTACCATTAAGGGATGAGTTCCTTGAAAATGCTAGGCTATTTATTTTTGA GACATACTGTAGAATACACCAACGCATTGACATGGGAGTTCTTGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGA GATGGATTGTGAATCTGATCCGTAACTCAAAGCTTGATGCCAAAATTGACTCTCAAACTGGAACTGTTATCATGGAACCC ACCCATCCAAACGTGTATGAGCAGCTGATAGACCATACCAAGGCCCTTAACGGGCGCACTTACAAGTTGGTCAGTCAACT TTTGGAACATGCACAAGGACAAGCTGCCCGGTAA
Protein sequence (LotjaGi5g1v0135400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEYDLTPRMAPNLDRHLVFPLLEFLQERQLYNDDHILKAKIELLNNTNMVDYAMDIHKSLYHTEDVPQDMVERRVDVVS RLKSLEEAAAPLVAFLQNAAAVQELRADKQYNLQMLNERYQIGPAQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNS ERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKNFASPLNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYL NAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQHSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLG KRVEESNFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLAEKLNLNYEEAERWIVNLIRNSKLDAKIDSQTGTVIMEP THPNVYEQLIDHTKALNGRTYKLVSQLLEHAQGQAAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 373 | 373 | 4.4E-219 | – | |
| PANTHER | 1 | 373 | 373 | 4.4E-219 | ||
| PIRSF | 1 | 437 | 437 | 5.3E-178 | ||
| Hamap | 2 | 429 | 428 | 48.713 | ||
| Pfam | 5 | 137 | 133 | 3.3E-49 | ||
| SMART | 5 | 137 | 133 | 5.9E-74 | ||
| Gene3D | 132 | 432 | 301 | 8.6E-9 | – | |
| ProSiteProfiles | 219 | 403 | 185 | 24.311 | ||
| Pfam | 285 | 399 | 115 | 1.3E-19 | ||
| SUPERFAMILY | 332 | 403 | 72 | 1.36E-12 | ||
| SMART | 332 | 416 | 85 | 1.8E-12 | ||
| SMART | 332 | 416 | 85 | 1.8E-12 | – | |
| Coils | 362 | 382 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Cellular component | Eukaryotic translation initiation factor 3 complex | A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. |
Expression pattern of LotjaGi5g1v0135400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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