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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0136500 |
| Transcript ID | LotjaGi5g1v0136500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIB; TAIR: AT3G10330.1 Cyclin-like family protein; Swiss-Prot: sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2; TrEMBL-Plants: tr|A0A151U2X6|A0A151U2X6_CAJCA Transcription initiation factor IIB; Found in the gene: LotjaGi5g1v0136500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:32525900..32529492) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGGACGCTTACTGCGGCGATTGCAAGCGGCAGACGGAGGTGGTGTTCGATCACTCGGCGGGCGACACCGTGTGCTC GGAGTGCGGCCTGGTGCTCGAGTCCCACTCCATCGATGAAACCTCCGAGTGGCGCACCTTCGCCAACGAGTCCGGCGACA ACGACCCCGTCCGTGTTGGCGGCCCCTCCAACCCTCTCCTGACCGACGGCGGCCTTTCCACCATGATTTCTAACCCTAAA GGCGGCTCCGGCGATTTCCTCTCCTCCTCCCTCGGCCGCTGGCAGAATCGCGGCTCCAACCCCGATCGTACCCTCATCCT CGCCTTCAAGACCATCGCCACCATGTCTGATAGGTTAATCTACCCTTGAATCTGTTGTTTTTGTTTTGGAATTTTTCATT TTCACTAGAAAGGGGAATGTGATTTCATTGTAAAACTTGGTTCAATCCAAGATGAGGAACAGTTTTGGGGATAACTCTGG ATCTCAAAACTGCTCTAGGTTTCAATATGCATAAGATAGCATTTGTTATATTTTGAAAATGACCCATTGTAACTGATGTT GTTGATGAATTTTCAGGTTGGGACTCGTTGCAACCATCAAGGTAGGTCATATTATCACTGAGGATAGCCTATGTCTTTTC TGTCTCTTTTGGTCATTGTTATTACAGGACAAGATTCATGAAACTTCCATCCATTGCATTGCATATGATTGTTTTAATTG ACCTTATGGGTGGACCTCAGAGGGAAAGCTTATTGAAATTGTACTATATTCAAATGATTAACACACCAAATTGGTCTGGT GATTAGAGAAGTCATTGAAGGTAGTGTGCCATAAGGTGTTGTGGCTGTAAGTTTGGAAGCCTATTGTGGTACAATGGTTT CCAATTGCACTGGTTATGAGGACATTGATTGACATTCCTCATTTTATGTGTCATGGTTTGATTACAGAACATGTTTTGTT AACCTTGGTGGATTCGGCTCGTCTAAAGTGACATAATCACTATAGAGAGTGAAGTGAGTTATCATAACCGTTGATTGAGA AATTAATGGTTGAGATTGTGATCAGATGCTTGCACATATATAACAAACTGTGGACATTCATTCACATTCCTTGTATTACC TGTTGTGGTTTGATTACAAAACAAGTTTTTTTTAACCTTCATTTATTTGTATGCGCTGCCTATGATTTCTGCTGTTAGGC TAAACTGAAATGTAAATGTCTATCTGGATCAAATTCTATATCTAAACTTAACTATTTTTTTTTAAATTTTAACTCTAAAT GTTATTCCCAAGTATTTAACTTTGATGACAAACTATTTTCTTCTTTTTCTAATGTTAACACCTTCTAGGCCTTACAAACC CCTTTGCATGCTCCTTGCTTGATATATGTTGTTGCAGAAGTACTGAGAGCCAAAGATAAAATATTAAATATACTTTTGAA GTAGTTTGACTGGCTTAAGAATTTTCTCTGAAGATTACTGTGCATAAAGCTATTGAATCTTGCATAGGCATGTTGTTTCA AAGAGTGATATATGCAAAGCAATTAGTAAATCTATGCTATATGATGTGGAAAAAGACTAGATAGTTTTCTTGCTGCCCTC ACAGAACCAAGTTTATAATTCTTTCATTGTTTCAACGTTTATTTTAATTTTACCTTTGTTTGAAGGATCGTGCAAATGAG ATATATAAGAGGGTTGAAGATCAAAAGTCTAGTAGAGGGAGAAATCAAGACGCTTTATTGGCTGCTTGTCTCTACATTGC TTGCCGACAGGAAGACAAACCTCGTACTGTAAAGGGTACAGCTTATGATTCTTTTAACATCTGGATGCTTCACAATTTAT CTTTCCATCTGTAAATGAGCTTCCCTGAACATATGGATTTCAACTAGAAATTTGCTCTATTGCCAATGGGGCTACAAAGA AGGAAATTGGCCGAGCAAAAGAATACATAGTGAAACAACTGGGTTTGGAGAAGGGTCAGTCTGTGGAGATGGGTACAATA CATGCTGGGGACTTTATGGTGAGTTTTCCTTATTGACTTCAAGCATATCTTGCTAGTTTGGGCTGTTTAATCTTGAAGAT ATCTCATCTAAACTTGTACTAGATTTCTTTGATGATACTAACAATATTTTCATCTCCAATAGAGGAGATTCTGTTCCAAT CTCGGCATGAATAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTTCAGAAATCAGAAGAATTTGATATAAGGTATATTTT GGTTTATCTCATATTTTCAAAGAGATTTAAATTGATGTCCACTGCTAACGCTGGTTTGCCAAATTCCGCTTAGAGGAGAT TCTGTTCCAATCTTGATTTTGCTTCAAGAGGAAACTTGGGGGGGGGGGGGGGGGAGTTGAGACACTGGAGTGTGTTAGTT ATAAAATTAAAATTAAACAAGAGGGCTATTAGCTCAAGATTAGAGATTTATAAGTTAGAAGTTATAACTTATCTAGAATG TGCTGATCAGCTGCAAAACTACACTTTCCCATTTTCCATTGAAAACAACGGTTGAGATGTGAAAACTGACGAATGAGTAG CACATGTTGAGAAGTAGGAACTCTTAGAAGTGTTGAAAAAAACATGGGTGTGAAGTGGAATCTGACACCTGGCCTGGCCT GGTGAGGACAGTTAGTGATCTCTGGTGGAATAAGAACACACAGAGGAGGAGTGGCTCTTGGCAAGGCTTCTAGGCGGAGG GAAACATGATTGAACCGATCTTTGTATCAGAATGTGACTATACAGTTAAGGAAAACTTATAAGGTTTGATAGGTAGTAGG TACTACTTATATATAAAAAAAAACTTATAACAATAAGTTGCATTTTCTTTTCTGGTGCCCATGAAATAAAAACTCCAAAA TTAGTGTGCTTGCTTAGGAGCCATATGAGATGAGTGACCTCCTGTGAAATTTTCTCAAGGAGTGTGTGCGCGTGGACAAC GGCGTTGGAAAAACTCGTCTTATAGGGAAGACAGTCATATAATCGGGATGTTACATGGCAATCTAGTATGATGCAGCATT TGCATAATTCATATTATTATGCAGTTCATTTCAACTTGATTTATATTCACCAGATAAAATAATTTAGATTGTTCTCTGCG TCTATAAACTAGTTCAACTTGTTTTTGGTTTAATAATCTCCAGAGATATACAATTATACCTGACTATCGGTACTATTGAT TTCTTTAATCTGTCAGGAGGAGTCCTATATCAATTACTGCAGCTGTTATCTACATCATAACTCAACTCTCTGATGATAAA AAACCTCTCAAAGGTACGTGACACTACTTTATGGGTTTTTGGTCTGTGAAAATTGTTTCTTCAATTTCACAGGTTTTGAT GGAATTTTTTTTAATATGGGATTAAAATTTAGAATGAGTATCTGAAGGAAAATCCGGTGGATGCATCCATTCTGTTAACT GCTACTTGTCTTAATGCAGATATATCAATTGCAACAGGAGTTGCAGAAGGAACAATTAGGAACTCCTACAAGGATCTTTA TCCCCATGTTTCAAAAATAATACCAACTTGGTATGCTAAGGAGGAGGATTTGAAGAACCTTTCCAGTCCTTGA
CDS sequence (LotjaGi5g1v0136500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGACGCTTACTGCGGCGATTGCAAGCGGCAGACGGAGGTGGTGTTCGATCACTCGGCGGGCGACACCGTGTGCTC GGAGTGCGGCCTGGTGCTCGAGTCCCACTCCATCGATGAAACCTCCGAGTGGCGCACCTTCGCCAACGAGTCCGGCGACA ACGACCCCGTCCGTGTTGGCGGCCCCTCCAACCCTCTCCTGACCGACGGCGGCCTTTCCACCATGATTTCTAACCCTAAA GGCGGCTCCGGCGATTTCCTCTCCTCCTCCCTCGGCCGCTGGCAGAATCGCGGCTCCAACCCCGATCGTACCCTCATCCT CGTTGGGACTCGTTGCAACCATCAAGGATCGTGCAAATGA
Protein sequence (LotjaGi5g1v0136500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDAYCGDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPSNPLLTDGGLSTMISNPK GGSGDFLSSSLGRWQNRGSNPDRTLILVGTRCNHQGSCK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 107 | 107 | 2.3E-48 | – | |
| PANTHER | 1 | 107 | 107 | 2.3E-48 | ||
| ProSiteProfiles | 2 | 34 | 33 | 9.07 | ||
| SUPERFAMILY | 4 | 50 | 47 | 5.53E-14 | – | |
| Gene3D | 5 | 113 | 109 | 2.4E-31 | – | |
| Pfam | 6 | 47 | 42 | 4.3E-15 | ||
| PRINTS | 19 | 39 | 21 | 3.2E-23 | ||
| PRINTS | 41 | 54 | 14 | 3.2E-23 | ||
| MobiDBLite | 48 | 79 | 32 | - | – | |
| PRINTS | 55 | 76 | 22 | 3.2E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Transcription preinitiation complex assembly | The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), required for transcription. |
Expression pattern of LotjaGi5g1v0136500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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