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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0136500 |
| Transcript ID | LotjaGi5g1v0136500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIB; TAIR: AT3G10330.1 Cyclin-like family protein; Swiss-Prot: sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2; TrEMBL-Plants: tr|A0A151U2X6|A0A151U2X6_CAJCA Transcription initiation factor IIB; Found in the gene: LotjaGi5g1v0136500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:32525642..32530434) extracted from Lotus japonicus Gifu genome v1.2.
AACTCATACAACCAAAACCACATGAGTTTCCTAAACAAGTCAAACTCAAGGCAAAACCCAACCCAACCCAACCCACTCCC AAATCCCAATTACCATTATTTGCTTAAGCATGTATCCCAAACACAAATCTTCCTATAAATATCCAACCGCTGTCCAAATC GTCAGCTCCGATCTTCCGTGATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTT CACGCTCTCTGAACCAAAATGTCGGACGCTTACTGCGGCGATTGCAAGCGGCAGACGGAGGTGGTGTTCGATCACTCGGC GGGCGACACCGTGTGCTCGGAGTGCGGCCTGGTGCTCGAGTCCCACTCCATCGATGAAACCTCCGAGTGGCGCACCTTCG CCAACGAGTCCGGCGACAACGACCCCGTCCGTGTTGGCGGCCCCTCCAACCCTCTCCTGACCGACGGCGGCCTTTCCACC ATGATTTCTAACCCTAAAGGCGGCTCCGGCGATTTCCTCTCCTCCTCCCTCGGCCGCTGGCAGAATCGCGGCTCCAACCC CGATCGTACCCTCATCCTCGCCTTCAAGACCATCGCCACCATGTCTGATAGGTTAATCTACCCTTGAATCTGTTGTTTTT GTTTTGGAATTTTTCATTTTCACTAGAAAGGGGAATGTGATTTCATTGTAAAACTTGGTTCAATCCAAGATGAGGAACAG TTTTGGGGATAACTCTGGATCTCAAAACTGCTCTAGGTTTCAATATGCATAAGATAGCATTTGTTATATTTTGAAAATGA CCCATTGTAACTGATGTTGTTGATGAATTTTCAGGTTGGGACTCGTTGCAACCATCAAGGTAGGTCATATTATCACTGAG GATAGCCTATGTCTTTTCTGTCTCTTTTGGTCATTGTTATTACAGGACAAGATTCATGAAACTTCCATCCATTGCATTGC ATATGATTGTTTTAATTGACCTTATGGGTGGACCTCAGAGGGAAAGCTTATTGAAATTGTACTATATTCAAATGATTAAC ACACCAAATTGGTCTGGTGATTAGAGAAGTCATTGAAGGTAGTGTGCCATAAGGTGTTGTGGCTGTAAGTTTGGAAGCCT ATTGTGGTACAATGGTTTCCAATTGCACTGGTTATGAGGACATTGATTGACATTCCTCATTTTATGTGTCATGGTTTGAT TACAGAACATGTTTTGTTAACCTTGGTGGATTCGGCTCGTCTAAAGTGACATAATCACTATAGAGAGTGAAGTGAGTTAT CATAACCGTTGATTGAGAAATTAATGGTTGAGATTGTGATCAGATGCTTGCACATATATAACAAACTGTGGACATTCATT CACATTCCTTGTATTACCTGTTGTGGTTTGATTACAAAACAAGTTTTTTTTAACCTTCATTTATTTGTATGCGCTGCCTA TGATTTCTGCTGTTAGGCTAAACTGAAATGTAAATGTCTATCTGGATCAAATTCTATATCTAAACTTAACTATTTTTTTT TAAATTTTAACTCTAAATGTTATTCCCAAGTATTTAACTTTGATGACAAACTATTTTCTTCTTTTTCTAATGTTAACACC TTCTAGGCCTTACAAACCCCTTTGCATGCTCCTTGCTTGATATATGTTGTTGCAGAAGTACTGAGAGCCAAAGATAAAAT ATTAAATATACTTTTGAAGTAGTTTGACTGGCTTAAGAATTTTCTCTGAAGATTACTGTGCATAAAGCTATTGAATCTTG CATAGGCATGTTGTTTCAAAGAGTGATATATGCAAAGCAATTAGTAAATCTATGCTATATGATGTGGAAAAAGACTAGAT AGTTTTCTTGCTGCCCTCACAGAACCAAGTTTATAATTCTTTCATTGTTTCAACGTTTATTTTAATTTTACCTTTGTTTG AAGGATCGTGCAAATGAGATATATAAGAGGGTTGAAGATCAAAAGTCTAGTAGAGGGAGAAATCAAGACGCTTTATTGGC TGCTTGTCTCTACATTGCTTGCCGACAGGAAGACAAACCTCGTACTGTAAAGGGTACAGCTTATGATTCTTTTAACATCT GGATGCTTCACAATTTATCTTTCCATCTGTAAATGAGCTTCCCTGAACATATGGATTTCAACTAGAAATTTGCTCTATTG CCAATGGGGCTACAAAGAAGGAAATTGGCCGAGCAAAAGAATACATAGTGAAACAACTGGGTTTGGAGAAGGGTCAGTCT GTGGAGATGGGTACAATACATGCTGGGGACTTTATGGTGAGTTTTCCTTATTGACTTCAAGCATATCTTGCTAGTTTGGG CTGTTTAATCTTGAAGATATCTCATCTAAACTTGTACTAGATTTCTTTGATGATACTAACAATATTTTCATCTCCAATAG AGGAGATTCTGTTCCAATCTCGGCATGAATAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTTCAGAAATCAGAAGAATT TGATATAAGGTATATTTTGGTTTATCTCATATTTTCAAAGAGATTTAAATTGATGTCCACTGCTAACGCTGGTTTGCCAA ATTCCGCTTAGAGGAGATTCTGTTCCAATCTTGATTTTGCTTCAAGAGGAAACTTGGGGGGGGGGGGGGGGGAGTTGAGA CACTGGAGTGTGTTAGTTATAAAATTAAAATTAAACAAGAGGGCTATTAGCTCAAGATTAGAGATTTATAAGTTAGAAGT TATAACTTATCTAGAATGTGCTGATCAGCTGCAAAACTACACTTTCCCATTTTCCATTGAAAACAACGGTTGAGATGTGA AAACTGACGAATGAGTAGCACATGTTGAGAAGTAGGAACTCTTAGAAGTGTTGAAAAAAACATGGGTGTGAAGTGGAATC TGACACCTGGCCTGGCCTGGTGAGGACAGTTAGTGATCTCTGGTGGAATAAGAACACACAGAGGAGGAGTGGCTCTTGGC AAGGCTTCTAGGCGGAGGGAAACATGATTGAACCGATCTTTGTATCAGAATGTGACTATACAGTTAAGGAAAACTTATAA GGTTTGATAGGTAGTAGGTACTACTTATATATAAAAAAAAACTTATAACAATAAGTTGCATTTTCTTTTCTGGTGCCCAT GAAATAAAAACTCCAAAATTAGTGTGCTTGCTTAGGAGCCATATGAGATGAGTGACCTCCTGTGAAATTTTCTCAAGGAG TGTGTGCGCGTGGACAACGGCGTTGGAAAAACTCGTCTTATAGGGAAGACAGTCATATAATCGGGATGTTACATGGCAAT CTAGTATGATGCAGCATTTGCATAATTCATATTATTATGCAGTTCATTTCAACTTGATTTATATTCACCAGATAAAATAA TTTAGATTGTTCTCTGCGTCTATAAACTAGTTCAACTTGTTTTTGGTTTAATAATCTCCAGAGATATACAATTATACCTG ACTATCGGTACTATTGATTTCTTTAATCTGTCAGGAGGAGTCCTATATCAATTACTGCAGCTGTTATCTACATCATAACT CAACTCTCTGATGATAAAAAACCTCTCAAAGGTACGTGACACTACTTTATGGGTTTTTGGTCTGTGAAAATTGTTTCTTC AATTTCACAGGTTTTGATGGAATTTTTTTTAATATGGGATTAAAATTTAGAATGAGTATCTGAAGGAAAATCCGGTGGAT GCATCCATTCTGTTAACTGCTACTTGTCTTAATGCAGATATATCAATTGCAACAGGAGTTGCAGAAGGAACAATTAGGAA CTCCTACAAGGATCTTTATCCCCATGTTTCAAAAATAATACCAACTTGGTATGCTAAGGAGGAGGATTTGAAGAACCTTT CCAGTCCTTGAATTGTAGAGCAAATTAATATTTATTGAACATGTTATGTTATTAGAGCATTCTGTTTTGGATGCACTGAA CTGTTAGTTAAAAGTTAAAGTGCGCACTAAACCGTTATTGAAGAGTTAATGCTGTACAAACGGTGAACCCACCTGCATCA ATTGAGTTTTCTTGACCCTTCCTCTTTTTGTTATGTGTTAACTAATTTGGAAAACACCAATGCTTTGTTCACACCTCATT TCTACCTCACTAAAGTGAGAAAGAAATACGATGAGTGATGTGATGGAAAAGAAGAGAGATAAAAGAAAAAGTTGTGTAAT TTAGATGGAAGAAAATGGGTGTGAATGTATTGAAGTTGTGTGTAAAAGTTCTTGGTTTTCTAGAGCCTTCAAAGTCAATT AGGTGTGAAACTGCTTGATTGTATATTGGTGCCTGCTGTGGTGCCTCTTCCCAGATGCAGGTATGGTGCCTCTACCTAGT TGGACCAATAGTAACAAAACATGTATTAAGTGAGGTGTCTTTTTCATATATCCTGAATTGATTTTTAAATAATATTGTTT TAGAAAAAAAAAAGTTTATATAATTGCTAACTGGTCCTTAACTAAATCAATTACAACTGTAAAAGTAATTTTTTAACCTC TCCTGTTCAAGTGATATTAAAATTGTTCTTCTCATGGGAAGGAGGAGAGACAAGTTGCAATTTCTCCCTCACCAGCAACC CTAAATCCTCTTTCTCAAAGCCACCCACTTCCTCTTTCAACCCTAAATCCTCTTTCCCCTCAGTCCCTCACCATGTCACT GAATAACCCCACTCAGGTGGGTCCTCACTGCCGCACCAAAACACTCAAAAAATGCAATCTTTGAGTTCGAATCCCTGAAA CCCAGAATCGCTTTTCTGACGTCTTCGCCACAGACGCCGGCCACGACCATGAAAGGTGCGAAACAGATGCCAT
CDS sequence (LotjaGi5g1v0136500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGACGCTTACTGCGGCGATTGCAAGCGGCAGACGGAGGTGGTGTTCGATCACTCGGCGGGCGACACCGTGTGCTC GGAGTGCGGCCTGGTGCTCGAGTCCCACTCCATCGATGAAACCTCCGAGTGGCGCACCTTCGCCAACGAGTCCGGCGACA ACGACCCCGTCCGTGTTGGCGGCCCCTCCAACCCTCTCCTGACCGACGGCGGCCTTTCCACCATGATTTCTAACCCTAAA GGCGGCTCCGGCGATTTCCTCTCCTCCTCCCTCGGCCGCTGGCAGAATCGCGGCTCCAACCCCGATCGTACCCTCATCCT CGCCTTCAAGACCATCGCCACCATGTCTGATAGGTTGGGACTCGTTGCAACCATCAAGGATCGTGCAAATGAGATATATA AGAGGGTTGAAGATCAAAAGTCTAGTAGAGGGAGAAATCAAGACGCTTTATTGGCTGCTTGTCTCTACATTGCTTGCCGA CAGGAAGACAAACCTCGTACTGTAAAGGAAATTTGCTCTATTGCCAATGGGGCTACAAAGAAGGAAATTGGCCGAGCAAA AGAATACATAGTGAAACAACTGGGTTTGGAGAAGGGTCAGTCTGTGGAGATGGGTACAATACATGCTGGGGACTTTATGA GGAGATTCTGTTCCAATCTCGGCATGAATAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTTCAGAAATCAGAAGAATTT GATATAAGGAGGAGTCCTATATCAATTACTGCAGCTGTTATCTACATCATAACTCAACTCTCTGATGATAAAAAACCTCT CAAAGATATATCAATTGCAACAGGAGTTGCAGAAGGAACAATTAGGAACTCCTACAAGGATCTTTATCCCCATGTTTCAA AAATAATACCAACTTGGTATGCTAAGGAGGAGGATTTGAAGAACCTTTCCAGTCCTTGA
Protein sequence (LotjaGi5g1v0136500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDAYCGDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPSNPLLTDGGLSTMISNPK GGSGDFLSSSLGRWQNRGSNPDRTLILAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACR QEDKPRTVKEICSIANGATKKEIGRAKEYIVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF DIRRSPISITAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSYKDLYPHVSKIIPTWYAKEEDLKNLSSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 308 | 308 | 3.2E-171 | ||
| PANTHER | 1 | 308 | 308 | 3.2E-171 | – | |
| ProSiteProfiles | 2 | 34 | 33 | 9.07 | ||
| SUPERFAMILY | 4 | 50 | 47 | 3.4E-13 | – | |
| Gene3D | 5 | 194 | 190 | 2.7E-65 | – | |
| Pfam | 6 | 47 | 42 | 2.3E-14 | ||
| PRINTS | 19 | 39 | 21 | 4.6E-67 | ||
| PRINTS | 41 | 54 | 14 | 4.6E-67 | ||
| PRINTS | 55 | 76 | 22 | 4.6E-67 | ||
| CDD | 104 | 185 | 82 | 1.81229E-13 | ||
| SUPERFAMILY | 105 | 196 | 92 | 3.89E-22 | ||
| SMART | 110 | 192 | 83 | 2.6E-8 | ||
| Pfam | 112 | 176 | 65 | 3.3E-19 | ||
| ProSitePatterns | 144 | 159 | 16 | - | ||
| PRINTS | 152 | 171 | 20 | 4.6E-67 | ||
| PRINTS | 179 | 194 | 16 | 4.6E-67 | ||
| CDD | 207 | 289 | 83 | 2.72608E-7 | ||
| SUPERFAMILY | 207 | 309 | 103 | 4.93E-25 | ||
| Gene3D | 209 | 311 | 103 | 3.7E-26 | – | |
| SMART | 211 | 290 | 80 | 2.1E-4 | ||
| PRINTS | 212 | 230 | 19 | 4.6E-67 | ||
| Pfam | 213 | 281 | 69 | 3.6E-8 | ||
| PRINTS | 244 | 260 | 17 | 4.6E-67 | ||
| PRINTS | 276 | 290 | 15 | 4.6E-67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | TBP-class protein binding | Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs). | ||
| Biological process | Transcription preinitiation complex assembly | The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), required for transcription. |
Expression pattern of LotjaGi5g1v0136500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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