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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0139300 |
| Transcript ID | LotjaGi5g1v0139300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60S ribosomal protein L5; TAIR: AT3G25520.1 ribosomal protein L5; Swiss-Prot: sp|Q6UNT2|RL5_CUCSA 60S ribosomal protein L5; TrEMBL-Plants: tr|I3SH51|I3SH51_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0139300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:33563593..33568806) extracted from Lotus japonicus Gifu genome v1.2.
GCCCAACGCAATCCCTTATAACCTAAACCTTGGCAAAACCTAATACCGTTTCACTCTTCTCCATCGCCTACGGGAAAGAG ATCGAGCTTCAGCAGCAATGGTGAGTATTTCCAATCTCTCGTCGTTCTATTTTCGTTTTCTCAGCAGCACATTCAATCAT TTCGTCTCGCAGAAAGTGAATCATGTTGATCTGTGTTAAGAGAAACTAGCAGTGTTCGTAATCTGTATTTTGATGTTGAG AAATTCATCACATTCAGTTTTGTGTTTTGGTTTTTACTAGCTTTTCGTTCTGGAGTAAAATCAATCTTGGTGTATGTTTA TGTGTGTGGTGGCTCATTTTTTCAGTGACTAAGCATGATTTTTCTTGTCCATTTCTTTATGCATAATGAAGGTGTTTATT AAGGCTCAGAAACCTAGGGCTTACTTCAAGAGATTTCAAGTCAAGTTTAAGAGAAGAAGAGGTATTGTTAATTTTTTATC TGTCTTTCTGCTCTGTGTTTCTTCATCATGCCTCCTCTATGCTAATATTCTGATGACATTATTTGCTTAAAAATTTGCAG AGGGAAAGACCGATTACAGAGCCCGAATTCGGTTGATCAATCAGGACAAGAACAAGTACAATACTGCAAAATACCGCTTT GTTGTTCGATCTGTATCCTACTGTTAGCCTAGACTTGTTTGTGCATTGTTTTTGTCTTTCATGAAGTGATTTTATGCCAT TAAAATGAATTTATCTATTAAAATTAGTTATACCTTCACCTCATCATCAGACGAACAAGGATATTATTGCACAAATAATA TCTTCTACCATTGCTGGTGATATTGTTCTTGCTGCAGCTTATTCACATGAACTTCCACGCTATGGTCTTGAAGTAGGCCT TACAAATTATGCTGCAGGTACTCTGTTTAAGAGAAATTCCTTTTCTCCGCTACCATTCTCTCATTCAACATTTTTTTATG TCTATCTTTTGACCTTTTTCTTTGGTTCTCAAATATATTTAAACATGACCAGCTTATTGCACTGGACTCCTATTGGCCCG TCGAGTCCTTAAAACACTTGAAATGGATGAGGAATATGAGGGCAATGTTGAGGTATCCTTTAATTTGCTATAGTCTCTCT CTCTCTCTCTGTAACTTCCTGATTCGTTGCTTATTAATTGAGTTGTATCATTTTTATCAGGCTACTGGAGAGGACTATTC AGTGGAACCTGCTGAGACCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATCAAGACCACAACTGGCAACCGTG TCTTCGGTGCCCTTAAGGTATTCAATATTATACTGCAATGCCAATTCGTTTGATCTTGTTATCTTGTTTTAATGCTGGTT GAATTGAATAATTTGGTGGTTTACAGGGAGCTCTAGATGGTGGTCTGGATATTCCTCACAGTGACAAGAGGTTTGCTGGT TTTGATAAGGAGAAGAAGGAGCTGGATGCTGAGGTTCACCGCAAATATGTCTTTGGTGGACATGTTGCTGCCTATATGAA GGCATGGGCGAAGATATCATTTTAGTACATTTTTATTTGAAATTTTAGGTGCAATAAAAGAAGATTTCTAATATTTGTGA GACAACCTATTTGATAATTTTTGCAGACTCTGATTGAAGATGAGCCAGAGAAATACCAGTCTCACTTTAGTGAATATATC AAGCGAGGAATAGAAGCTGATGGACTTGAGGAGCTGTATAAGAAGGTCCATGCTGCAATTCGTGCAGATCCCACTTCAAA GAAATCTGAGAAGCCGCAACCTAAGGAGCATAAGAGGTTAGTAATTGTGGTATATACTATATAGACATGCATTATGCTTC TAGAAAAAAAATCAGCTATCTGTTCTTTATGGGAAAAATAGTTTTGAGAGTGTTTTGTTCATATAATTATTATGTTTCAA AGATTTTAAGTGGATGGATAAAAAGGGAAGGGAAAGTAAGCAGGGGAATAGAGGGGGGGGGGTTACTTACCCTTGCTTTG CTGTTTTCAATAATGGTTGTAGGGGAATGTCTTTCCTGTGATTGTTTGCTGTTAAGAAATAGGGAGAAGAGTTATTTTCA CGTCATATAGTTTAAAGAGCTACATTCAAAGAAAAATTCAACTTAGTTTAAGAATTTTTTTAACCTAAATAGAGGGTTCG TCTAAAATCTTCCCAATAAGTGATTGGGTCACTTTTTCTCTTTACCCTCTTCCCATTCTTTACCACTAATTCAAACTTCG ATTTGCTTTTGTAAATTAACCCTATTACTTTGTGGAAACCCCTAAAGCTTGTGATTGGTATGAAATGTAGTTTTTGGAGG GATTTAAAATGACTGAGATATCAATAATCTGTATTGATGCTTTACTAAAAGAAACTTAAAAATTATTTAATTTTGATAGT TCTTTTTTTCCCATGTTCTGCTTGTTAGAAGAAATTTTGAAAATTTCTCATCCATTCTTTTCTAATTTTCCTTTCCATTC ATCTTGATCCCTGATACTGTCTTCAACATCTTGATTTGGTGGTTTCAGCTTCATTCTTTTCATTGGTTTCATTCCTTTTT ATCCATTGGTAGTTTGATTTTCTGATTTTCGTCATCTCTGTGTATCTTAGTACATGGATTGTAGATCTGATTTTTGACAG CTTGAGAATTTTGTTGGCTGTTTTTGTTTTAACCGCTACACTATTTTGATGGATTCATTATCACTTTGCTGTGATGTCAA GAAAGTGGGCGAGCATGCATAATTGAAACCATTATTTGTCATGTGTTTTACTCCATGTAGCTTCTATGGTTTTGGGTAGA AGAGTTGTTCCGTTGTGAACTTTTCATAGAATAAATTTAGAGTGTAGAGTGAAGAGGAGATAGAATTGAGGGGGTTTTCA GTTTCTCATTTTTGTTGCGTTCTGCCAACTTTGTACTTTGTCTAAAATTGGATCATTGCCCAGTATTTATGAAGTTACTA ATTTATGAGTATTTCACTGTTACTTCCGCTTTAAATTTGTAATGTTTTAAGTACCCCCTCATCCATTTATAAAGCCTATG AAAACCTCCTGTGAAATGTTTATAATGTCCATTTAAGATCCCTAATTTTCCTGTCAGATTTTTGTGATTCAAATCACTAT TAACCTGAGGTACCTTTTTCCTTTTTAGCCACCACAGTCACACACATGCCATCATTCGTAACATGTTAGTGGGCCTCTGC CTCATGGATACAAGATAGTTAAAAAGAAATAAAGAAAGTAGGTTGGTGAGGGTTATGCCAAGGGACATGTATGTGTGGAC TGGCTGGAGTGCTATTATGAGTAAGAAGGAAATAGTGGAGGGGTAGTGTCTCAGAATGTACATGTTCCTGCAGGCCATAG GAGGGAAATTATGCAATGATGGAAAGAATGTTAATAAATGTCAATGAAGGAGAGGGGAAAGAGTTTGGGGTTTAGCAAAT TTTAGGGATTATTTTTGGAGCTTAGGCTGGGGTATGCAGAGAATTTCAGACCTGATTGTATAATATGCTGCTTTGTTTGG ATGCAGAGGTGAAAATGTGAGGGAGGAATATGAGTGGAAAGAATATAGGTGGAAAGAATTTAAGCGGAAAATGAGGTGAT TTTTAAGTTGTTTGGATTAATAGAAAAAGAAGGGAGAATGAAAGGAGAAGTCAGTATAATTTCACGCATCCCAATGGAAT TTCAACTGCCCTTTGATTCTTTCTCCTTAGGTACAGCGAGGAATTTTTTTTAGTACTGTAGTCCATCCATTTTCAGCTCC TGCCATTTTGCACTCCCATCCAAACACATAAAAAGCTATTTTCCACACATAATCCTTTCTACTTCCTTCCTTTCAAACTT CCTTCCTTTCCACACATTTTTCAAGGTGTTTACTGTTCTCTCTCTGCTGGTTTGTATTGCTGCTTGCACACAACAGGAAA TTTTTCATACTAAATTTATCTGGTAATTTTTGGGATAGATGTGTTCGGCTTACTTTAGACTAACTACCCAAGGCATCAAG AGATAGATTTAAATGGTCTATCTCCTAGGTAGACTTATCGTCATTTGATCCATGTAGCCAACTAACTCCATTTACTGGGA AAAGGATTTGGTTGTTCTTGTATGTTTTCTTACTACAACTTACACAGGAACTAAGTTTTTGCTTTTCGGACACCACTGTG AAAGTTAATAAATAAATTTGTAAAAGGGGGAAACTTTATTTTGATATAAATTTTATAAATAAGAGGAATTATAATTATTA TTTTATTCAAACAAGGGATTGTGCAAATGAATTGCACGCTTGCAAGCCCTTAAAATCATGAATTCTCCAGAGTTTTCAAC TCCATCAAGTAAAAGGAATTTGGTTGAACAATTTAATTCCTTAAAATCATGAAAAAAAAATCATGAATTCTCCTGAGTTT TCAATTGCATCAACGAAGCACATCTAAGTATTTCTTTGTATCTTTTGTACAGGTACAACCTCAAAAAGCTTACTTATGAT GAGAGGAAGAATAAGTTGATTGCACGCTTGCAAGCCCTCAACTCTGCTGCTGATGATCAAGAAGATGATGAGGATGATGA GTGAAAGTGCAATGAATGCATATCTAGAACTTCTTAGTACTAGCATCCACAGAATCGTTTTCTTAAAAATTTGTTGCTTG TGCTAATTGTTTTTCAACGTAGAAATTTTGGATACTTTTGTATTGGTCTTTTATTGGGGTCAACTTTTGAGTAAACCTGG ATTGGAATGTTTCTCAACGTAATTTTCTGTTGTACACCAGATAAGTCTTTTCCTATAAAATTAATGTTATCCATTATAGT ATGCAGTAAATGTGTTTAGTTACATGCGCTTATTGCTTCTGGAATAAAATAAGTTCCATGGATATCAATTTTGTAGGAAA GGTAACGAGATCTAAAGGGGCATTCTAATTTCGGAAGTGCTATGTGTTTATTCTTATTGTATGCAGTGGCGATGGTTAGG TAGTCCTTGTTTTGAGTTAATGCGATGGACCAGCGAGTGGTATATGAACAGAAACTTTTAAGAGTGAATTTAAGCCAGGA AGTTTCATATTATTTAAAAATGTACAGTCTAGAAATATGAAAACCAATTTATGTTACAGTTACACATTAATAGCAACATA AGATGCTCAAACTGAACATTTTATTTTTTGGAACTTATGCTAACTAACTTGGCTAACCATGTCTACGCCTCTGTTAAATT GACCATCCTCCTAC
CDS sequence (LotjaGi5g1v0139300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTTATTAAGGCTCAGAAACCTAGGGCTTACTTCAAGAGATTTCAAGTCAAGTTTAAGAGAAGAAGAGAGGGAAA GACCGATTACAGAGCCCGAATTCGGTTGATCAATCAGGACAAGAACAAGTACAATACTGCAAAATACCGCTTTGTTGTTC GATCTACGAACAAGGATATTATTGCACAAATAATATCTTCTACCATTGCTGGTGATATTGTTCTTGCTGCAGCTTATTCA CATGAACTTCCACGCTATGGTCTTGAAGTAGGCCTTACAAATTATGCTGCAGCTTATTGCACTGGACTCCTATTGGCCCG TCGAGTCCTTAAAACACTTGAAATGGATGAGGAATATGAGGGCAATGTTGAGGCTACTGGAGAGGACTATTCAGTGGAAC CTGCTGAGACCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATCAAGACCACAACTGGCAACCGTGTCTTCGGT GCCCTTAAGGGAGCTCTAGATGGTGGTCTGGATATTCCTCACAGTGACAAGAGGTTTGCTGGTTTTGATAAGGAGAAGAA GGAGCTGGATGCTGAGGTTCACCGCAAATATGTCTTTGGTGGACATGTTGCTGCCTATATGAAGACTCTGATTGAAGATG AGCCAGAGAAATACCAGTCTCACTTTAGTGAATATATCAAGCGAGGAATAGAAGCTGATGGACTTGAGGAGCTGTATAAG AAGGTCCATGCTGCAATTCGTGCAGATCCCACTTCAAAGAAATCTGAGAAGCCGCAACCTAAGGAGCATAAGAGGTACAA CCTCAAAAAGCTTACTTATGATGAGAGGAAGAATAAGTTGATTGCACGCTTGCAAGCCCTCAACTCTGCTGCTGATGATC AAGAAGATGATGAGGATGATGAGTGA
Protein sequence (LotjaGi5g1v0139300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFIKAQKPRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTAKYRFVVRSTNKDIIAQIISSTIAGDIVLAAAYS HELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEPAETRRPFRALLDVGLIKTTTGNRVFG ALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYVFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEELYK KVHAAIRADPTSKKSEKPQPKEHKRYNLKKLTYDERKNKLIARLQALNSAADDQEDDEDDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 291 | 291 | 9.3E-138 | – | |
| PANTHER | 1 | 295 | 295 | 3.8E-179 | ||
| Phobius | 1 | 59 | 59 | - | – | |
| PANTHER | 1 | 295 | 295 | 3.8E-179 | – | |
| SUPERFAMILY | 11 | 251 | 241 | 8.37E-62 | – | |
| Pfam | 14 | 175 | 162 | 4.7E-82 | ||
| Hamap | 14 | 246 | 233 | 22.244 | ||
| PRINTS | 20 | 39 | 20 | 1.0E-64 | ||
| CDD | 31 | 170 | 140 | 1.47357E-26 | – | |
| PRINTS | 43 | 62 | 20 | 1.0E-64 | ||
| Phobius | 60 | 80 | 21 | - | – | |
| Phobius | 81 | 85 | 5 | - | – | |
| PRINTS | 84 | 104 | 21 | 1.0E-64 | ||
| Phobius | 86 | 106 | 21 | - | – | |
| Phobius | 107 | 301 | 195 | - | – | |
| PRINTS | 144 | 163 | 20 | 1.0E-64 | ||
| PRINTS | 164 | 183 | 20 | 1.0E-64 | ||
| Pfam | 191 | 280 | 90 | 1.6E-34 | ||
| PRINTS | 206 | 226 | 21 | 1.0E-64 | ||
| MobiDBLite | 248 | 269 | 22 | - | – | |
| Coils | 277 | 297 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Molecular function | 5S rRNA binding | Interacting selectively and non-covalently with 5S ribosomal RNA, the smallest RNA constituent of a ribosome. |
Expression pattern of LotjaGi5g1v0139300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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